data_1TZ6
#
_model_server_result.job_id            7x42pJU2FjQzC5UQEJJJsA 
_model_server_result.datetime_utc      '2024-11-28 03:15:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1tz6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    1TZ6 
#
_exptl.entry_id    1TZ6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              505.208 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1TZ6 
_cell.length_a            137.007 
_cell.length_b            54.101 
_cell.length_c            89.895 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1TZ6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ALA 200 A ALA 180 1_555 E K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? 
metalc ? metalc2 A O ALA 201 A ALA 181 1_555 E K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? 
metalc ? metalc3 A N ALA 203 A ALA 183 1_555 E K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.674 ? 
metalc ? metalc4 A O ALA 203 A ALA 183 1_555 E K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc5 A O GLY 233 A GLY 213 1_555 E K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? 
metalc ? metalc6 A OD2 ASP 266 A ASP 246 1_555 D K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? 
metalc ? metalc7 A O ASP 266 A ASP 246 1_555 D K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? 
metalc ? metalc8 A O THR 268 A THR 248 1_555 D K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? 
metalc ? metalc9 A O ALA 307 A ALA 287 1_555 D K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? 
metalc ? metalc10 A O ALA 310 A ALA 290 1_555 D K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? 
metalc ? metalc11 A O GLY 312 A GLY 292 1_555 D K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? 
metalc ? metalc12 F O3G ACP . A ACP 401 1_555 C MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc13 F O1B ACP . A ACP 401 1_555 C MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.068 ? 
metalc ? metalc14 E K K . A K 405 1_555 L O HOH . A HOH 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.676 ? 
metalc ? metalc15 B O ALA 200 B ALA 180 1_555 I K K . B K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? 
metalc ? metalc16 B O ALA 201 B ALA 181 1_555 I K K . B K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
metalc ? metalc17 B O ALA 203 B ALA 183 1_555 I K K . B K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? 
metalc ? metalc18 B O GLY 233 B GLY 213 1_555 I K K . B K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? 
metalc ? metalc19 B O ASP 266 B ASP 246 1_555 J K K . B K 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? 
metalc ? metalc20 B OD2 ASP 266 B ASP 246 1_555 J K K . B K 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? 
metalc ? metalc21 B O THR 268 B THR 248 1_555 J K K . B K 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? 
metalc ? metalc22 B N THR 268 B THR 248 1_555 J K K . B K 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.339 ? 
metalc ? metalc23 B O ALA 307 B ALA 287 1_555 J K K . B K 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.107 ? 
metalc ? metalc24 B O GLY 312 B GLY 292 1_555 J K K . B K 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? 
metalc ? metalc25 K O1G ACP . B ACP 501 1_555 H MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? 
metalc ? metalc26 K O2B ACP . B ACP 501 1_555 H MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc27 I K K . B K 504 1_555 M O HOH . B HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.509 ? 
metalc ? metalc28 I K K . B K 504 1_555 M O HOH . B HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.677 ? 
metalc ? metalc29 I K K . B K 504 1_555 M O HOH . B HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.062 ? 
#
_chem_comp.formula           'C11 H18 N5 O12 P3' 
_chem_comp.formula_weight    505.208 
_chem_comp.id                ACP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ACP doub 1 n n 
PG O2G ACP sing 2 n n 
PG O3G ACP sing 3 n n 
PG C3B ACP sing 4 n n 
O2G HOG2 ACP sing 5 n n 
O3G HOG3 ACP sing 6 n n 
PB O1B ACP doub 7 n n 
PB O2B ACP sing 8 n n 
PB C3B ACP sing 9 n n 
PB O3A ACP sing 10 n n 
O2B HOB2 ACP sing 11 n n 
C3B H3B1 ACP sing 12 n n 
C3B H3B2 ACP sing 13 n n 
PA O1A ACP doub 14 n n 
PA O2A ACP sing 15 n n 
PA O3A ACP sing 16 n n 
PA O5' ACP sing 17 n n 
O2A HOA2 ACP sing 18 n n 
O5' C5' ACP sing 19 n n 
C5' C4' ACP sing 20 n n 
C5' "H5'1" ACP sing 21 n n 
C5' "H5'2" ACP sing 22 n n 
C4' O4' ACP sing 23 n n 
C4' C3' ACP sing 24 n n 
C4' H4' ACP sing 25 n n 
O4' C1' ACP sing 26 n n 
C3' O3' ACP sing 27 n n 
C3' C2' ACP sing 28 n n 
C3' H3' ACP sing 29 n n 
O3' HO3' ACP sing 30 n n 
C2' O2' ACP sing 31 n n 
C2' C1' ACP sing 32 n n 
C2' H2' ACP sing 33 n n 
O2' HO2' ACP sing 34 n n 
C1' N9 ACP sing 35 n n 
C1' H1' ACP sing 36 n n 
N9 C8 ACP sing 37 n y 
N9 C4 ACP sing 38 n y 
C8 N7 ACP doub 39 n y 
C8 H8 ACP sing 40 n n 
N7 C5 ACP sing 41 n y 
C5 C6 ACP sing 42 n y 
C5 C4 ACP doub 43 n y 
C6 N6 ACP sing 44 n n 
C6 N1 ACP doub 45 n y 
N6 HN61 ACP sing 46 n n 
N6 HN62 ACP sing 47 n n 
N1 C2 ACP sing 48 n y 
C2 N3 ACP doub 49 n y 
C2 H2 ACP sing 50 n n 
N3 C4 ACP sing 51 n y 
#
_atom_sites.entry_id                     1TZ6 
_atom_sites.fract_transf_matrix[1][1]    0.007299 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018484 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011124 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 403 403 MG MG . 
D 3 K A 1 404 404 K K . 
E 3 K A 1 405 405 K K . 
F 4 ACP A 1 401 401 ACP ACP . 
G 5 AIS A 1 402 402 AIS AIS . 
H 2 MG B 1 503 403 MG MG . 
I 3 K B 1 504 404 K K . 
J 3 K B 1 505 405 K K . 
K 4 ACP B 1 501 401 ACP ACP . 
L 6 HOH A 1 406 2 HOH HOH . 
L 6 HOH A 2 407 3 HOH HOH . 
L 6 HOH A 3 408 8 HOH HOH . 
L 6 HOH A 4 409 11 HOH HOH . 
L 6 HOH A 5 410 12 HOH HOH . 
L 6 HOH A 6 411 13 HOH HOH . 
L 6 HOH A 7 412 14 HOH HOH . 
L 6 HOH A 8 413 17 HOH HOH . 
L 6 HOH A 9 414 22 HOH HOH . 
L 6 HOH A 10 415 23 HOH HOH . 
L 6 HOH A 11 416 25 HOH HOH . 
L 6 HOH A 12 417 26 HOH HOH . 
L 6 HOH A 13 418 27 HOH HOH . 
L 6 HOH A 14 419 28 HOH HOH . 
L 6 HOH A 15 420 29 HOH HOH . 
L 6 HOH A 16 421 30 HOH HOH . 
L 6 HOH A 17 422 31 HOH HOH . 
L 6 HOH A 18 423 33 HOH HOH . 
L 6 HOH A 19 424 36 HOH HOH . 
L 6 HOH A 20 425 37 HOH HOH . 
L 6 HOH A 21 426 39 HOH HOH . 
L 6 HOH A 22 427 41 HOH HOH . 
L 6 HOH A 23 428 42 HOH HOH . 
L 6 HOH A 24 429 43 HOH HOH . 
L 6 HOH A 25 430 44 HOH HOH . 
L 6 HOH A 26 431 45 HOH HOH . 
L 6 HOH A 27 432 46 HOH HOH . 
L 6 HOH A 28 433 49 HOH HOH . 
L 6 HOH A 29 434 50 HOH HOH . 
L 6 HOH A 30 435 51 HOH HOH . 
L 6 HOH A 31 436 52 HOH HOH . 
L 6 HOH A 32 437 54 HOH HOH . 
L 6 HOH A 33 438 56 HOH HOH . 
M 6 HOH B 1 506 1 HOH HOH . 
M 6 HOH B 2 507 4 HOH HOH . 
M 6 HOH B 3 508 5 HOH HOH . 
M 6 HOH B 4 509 6 HOH HOH . 
M 6 HOH B 5 510 7 HOH HOH . 
M 6 HOH B 6 511 9 HOH HOH . 
M 6 HOH B 7 512 10 HOH HOH . 
M 6 HOH B 8 513 15 HOH HOH . 
M 6 HOH B 9 514 16 HOH HOH . 
M 6 HOH B 10 515 18 HOH HOH . 
M 6 HOH B 11 516 19 HOH HOH . 
M 6 HOH B 12 517 20 HOH HOH . 
M 6 HOH B 13 518 21 HOH HOH . 
M 6 HOH B 14 519 24 HOH HOH . 
M 6 HOH B 15 520 32 HOH HOH . 
M 6 HOH B 16 521 34 HOH HOH . 
M 6 HOH B 17 522 35 HOH HOH . 
M 6 HOH B 18 523 38 HOH HOH . 
M 6 HOH B 19 524 40 HOH HOH . 
M 6 HOH B 20 525 47 HOH HOH . 
M 6 HOH B 21 526 48 HOH HOH . 
M 6 HOH B 22 527 53 HOH HOH . 
M 6 HOH B 23 528 55 HOH HOH . 
M 6 HOH B 24 529 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ACP . . . F 4 22.547 -10.706 -3.112 1 60.98 ? PG ACP 401 A 1 
HETATM 2 O O1G ACP . . . F 4 22.009 -11.897 -3.809 1 60.98 ? O1G ACP 401 A 1 
HETATM 3 O O2G ACP . . . F 4 21.531 -10.155 -1.988 1 60.98 ? O2G ACP 401 A 1 
HETATM 4 O O3G ACP . . . F 4 22.797 -9.479 -4.126 1 60.98 ? O3G ACP 401 A 1 
HETATM 5 P PB ACP . . . F 4 25.514 -10.785 -3.388 1 60.98 ? PB ACP 401 A 1 
HETATM 6 O O1B ACP . . . F 4 25.134 -11.396 -4.681 1 60.98 ? O1B ACP 401 A 1 
HETATM 7 O O2B ACP . . . F 4 25.929 -9.363 -3.381 1 60.98 ? O2B ACP 401 A 1 
HETATM 8 C C3B ACP . . . F 4 24.117 -11.002 -2.259 1 60.98 ? C3B ACP 401 A 1 
HETATM 9 P PA ACP . . . F 4 27.886 -11.004 -1.906 1 60.98 ? PA ACP 401 A 1 
HETATM 10 O O1A ACP . . . F 4 28.751 -10.362 -2.921 1 60.98 ? O1A ACP 401 A 1 
HETATM 11 O O2A ACP . . . F 4 27.366 -10.165 -0.804 1 60.98 ? O2A ACP 401 A 1 
HETATM 12 O O3A ACP . . . F 4 26.659 -11.683 -2.698 1 60.98 ? O3A ACP 401 A 1 
HETATM 13 O O5' ACP . . . F 4 28.641 -12.278 -1.278 1 60.98 ? O5' ACP 401 A 1 
HETATM 14 C C5' ACP . . . F 4 27.975 -13.063 -0.286 1 60.98 ? C5' ACP 401 A 1 
HETATM 15 C C4' ACP . . . F 4 28.983 -13.99 0.395 1 60.98 ? C4' ACP 401 A 1 
HETATM 16 O O4' ACP . . . F 4 29.627 -14.889 -0.524 1 60.98 ? O4' ACP 401 A 1 
HETATM 17 C C3' ACP . . . F 4 30.123 -13.194 1.029 1 60.98 ? C3' ACP 401 A 1 
HETATM 18 O O3' ACP . . . F 4 29.689 -12.666 2.286 1 60.98 ? O3' ACP 401 A 1 
HETATM 19 C C2' ACP . . . F 4 31.101 -14.345 1.249 1 60.98 ? C2' ACP 401 A 1 
HETATM 20 O O2' ACP . . . F 4 30.639 -15.218 2.283 1 60.98 ? O2' ACP 401 A 1 
HETATM 21 C C1' ACP . . . F 4 30.999 -15.04 -0.112 1 60.98 ? C1' ACP 401 A 1 
HETATM 22 N N9 ACP . . . F 4 31.855 -14.333 -1.093 1 60.98 ? N9 ACP 401 A 1 
HETATM 23 C C8 ACP . . . F 4 31.466 -13.384 -1.941 1 60.98 ? C8 ACP 401 A 1 
HETATM 24 N N7 ACP . . . F 4 32.527 -12.998 -2.643 1 60.98 ? N7 ACP 401 A 1 
HETATM 25 C C5 ACP . . . F 4 33.574 -13.708 -2.232 1 60.98 ? C5 ACP 401 A 1 
HETATM 26 C C6 ACP . . . F 4 34.903 -13.694 -2.632 1 60.98 ? C6 ACP 401 A 1 
HETATM 27 N N6 ACP . . . F 4 35.322 -12.879 -3.596 1 60.98 ? N6 ACP 401 A 1 
HETATM 28 N N1 ACP . . . F 4 35.776 -14.575 -1.992 1 60.98 ? N1 ACP 401 A 1 
HETATM 29 C C2 ACP . . . F 4 35.307 -15.433 -0.989 1 60.98 ? C2 ACP 401 A 1 
HETATM 30 N N3 ACP . . . F 4 34.019 -15.366 -0.684 1 60.98 ? N3 ACP 401 A 1 
HETATM 31 C C4 ACP . . . F 4 33.157 -14.534 -1.275 1 60.98 ? C4 ACP 401 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           234 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           31 
#