data_1TZ7 # _model_server_result.job_id BvylzkP9EnpLhiF-rP7Bsg _model_server_result.datetime_utc '2024-12-14 19:54:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tz7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":3282}' # _entry.id 1TZ7 # _exptl.entry_id 1TZ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1TZ7 _cell.length_a 156.745 _cell.length_b 156.745 _cell.length_c 169.161 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TZ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 A,C,D 3 1,2 B,E 3 3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+5/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 78.3725 135.745152 140.9675 3 'crystal symmetry operation' 4_665 -x+1,-y+1,z+1/2 -1 0 0 0 -1 0 0 0 1 78.3725 135.745152 84.5805 4 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 56.387 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 1TZ7 _atom_sites.fract_transf_matrix[1][1] 0.00638 _atom_sites.fract_transf_matrix[1][2] 0.003683 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD A 1 3282 3282 MPD MPD . D 3 HOH A 1 3283 1 HOH HOH . D 3 HOH A 2 3284 4 HOH HOH . D 3 HOH A 3 3285 5 HOH HOH . D 3 HOH A 4 3286 6 HOH HOH . D 3 HOH A 5 3287 9 HOH HOH . D 3 HOH A 6 3288 11 HOH HOH . D 3 HOH A 7 3289 12 HOH HOH . D 3 HOH A 8 3290 15 HOH HOH . D 3 HOH A 9 3291 17 HOH HOH . D 3 HOH A 10 3292 22 HOH HOH . D 3 HOH A 11 3293 23 HOH HOH . D 3 HOH A 12 3294 26 HOH HOH . D 3 HOH A 13 3295 28 HOH HOH . D 3 HOH A 14 3296 29 HOH HOH . D 3 HOH A 15 3297 31 HOH HOH . D 3 HOH A 16 3298 33 HOH HOH . D 3 HOH A 17 3299 36 HOH HOH . D 3 HOH A 18 3300 39 HOH HOH . D 3 HOH A 19 3301 41 HOH HOH . D 3 HOH A 20 3302 42 HOH HOH . D 3 HOH A 21 3303 47 HOH HOH . D 3 HOH A 22 3304 48 HOH HOH . D 3 HOH A 23 3305 49 HOH HOH . D 3 HOH A 24 3306 51 HOH HOH . D 3 HOH A 25 3307 58 HOH HOH . D 3 HOH A 26 3308 62 HOH HOH . D 3 HOH A 27 3309 64 HOH HOH . D 3 HOH A 28 3310 66 HOH HOH . D 3 HOH A 29 3311 67 HOH HOH . D 3 HOH A 30 3312 68 HOH HOH . D 3 HOH A 31 3313 69 HOH HOH . D 3 HOH A 32 3314 72 HOH HOH . D 3 HOH A 33 3315 76 HOH HOH . D 3 HOH A 34 3316 77 HOH HOH . D 3 HOH A 35 3317 78 HOH HOH . D 3 HOH A 36 3318 79 HOH HOH . D 3 HOH A 37 3319 80 HOH HOH . D 3 HOH A 38 3320 82 HOH HOH . D 3 HOH A 39 3321 83 HOH HOH . D 3 HOH A 40 3322 86 HOH HOH . D 3 HOH A 41 3323 88 HOH HOH . D 3 HOH A 42 3324 89 HOH HOH . D 3 HOH A 43 3325 90 HOH HOH . D 3 HOH A 44 3326 92 HOH HOH . D 3 HOH A 45 3327 93 HOH HOH . D 3 HOH A 46 3328 95 HOH HOH . D 3 HOH A 47 3329 96 HOH HOH . D 3 HOH A 48 3330 104 HOH HOH . D 3 HOH A 49 3331 105 HOH HOH . D 3 HOH A 50 3332 106 HOH HOH . D 3 HOH A 51 3333 108 HOH HOH . D 3 HOH A 52 3334 109 HOH HOH . D 3 HOH A 53 3335 112 HOH HOH . D 3 HOH A 54 3336 114 HOH HOH . D 3 HOH A 55 3337 115 HOH HOH . D 3 HOH A 56 3338 116 HOH HOH . D 3 HOH A 57 3339 117 HOH HOH . D 3 HOH A 58 3340 118 HOH HOH . D 3 HOH A 59 3341 119 HOH HOH . D 3 HOH A 60 3342 125 HOH HOH . D 3 HOH A 61 3343 126 HOH HOH . D 3 HOH A 62 3344 127 HOH HOH . D 3 HOH A 63 3345 130 HOH HOH . D 3 HOH A 64 3346 132 HOH HOH . D 3 HOH A 65 3347 134 HOH HOH . D 3 HOH A 66 3348 137 HOH HOH . D 3 HOH A 67 3349 140 HOH HOH . D 3 HOH A 68 3350 141 HOH HOH . D 3 HOH A 69 3351 142 HOH HOH . D 3 HOH A 70 3352 143 HOH HOH . D 3 HOH A 71 3353 144 HOH HOH . D 3 HOH A 72 3354 145 HOH HOH . D 3 HOH A 73 3355 146 HOH HOH . D 3 HOH A 74 3356 149 HOH HOH . D 3 HOH A 75 3357 151 HOH HOH . D 3 HOH A 76 3358 152 HOH HOH . D 3 HOH A 77 3359 153 HOH HOH . D 3 HOH A 78 3360 156 HOH HOH . D 3 HOH A 79 3361 157 HOH HOH . D 3 HOH A 80 3362 160 HOH HOH . D 3 HOH A 81 3363 161 HOH HOH . D 3 HOH A 82 3364 164 HOH HOH . D 3 HOH A 83 3365 165 HOH HOH . D 3 HOH A 84 3366 167 HOH HOH . D 3 HOH A 85 3367 170 HOH HOH . D 3 HOH A 86 3368 171 HOH HOH . D 3 HOH A 87 3369 176 HOH HOH . D 3 HOH A 88 3370 177 HOH HOH . D 3 HOH A 89 3371 180 HOH HOH . D 3 HOH A 90 3372 182 HOH HOH . D 3 HOH A 91 3373 183 HOH HOH . D 3 HOH A 92 3374 191 HOH HOH . D 3 HOH A 93 3375 192 HOH HOH . D 3 HOH A 94 3376 197 HOH HOH . D 3 HOH A 95 3377 198 HOH HOH . D 3 HOH A 96 3378 200 HOH HOH . D 3 HOH A 97 3379 203 HOH HOH . D 3 HOH A 98 3380 209 HOH HOH . E 3 HOH B 1 486 2 HOH HOH . E 3 HOH B 2 487 3 HOH HOH . E 3 HOH B 3 488 7 HOH HOH . E 3 HOH B 4 489 8 HOH HOH . E 3 HOH B 5 490 10 HOH HOH . E 3 HOH B 6 491 13 HOH HOH . E 3 HOH B 7 492 14 HOH HOH . E 3 HOH B 8 493 16 HOH HOH . E 3 HOH B 9 494 18 HOH HOH . E 3 HOH B 10 495 19 HOH HOH . E 3 HOH B 11 496 20 HOH HOH . E 3 HOH B 12 497 21 HOH HOH . E 3 HOH B 13 498 24 HOH HOH . E 3 HOH B 14 499 25 HOH HOH . E 3 HOH B 15 500 27 HOH HOH . E 3 HOH B 16 501 30 HOH HOH . E 3 HOH B 17 502 32 HOH HOH . E 3 HOH B 18 503 34 HOH HOH . E 3 HOH B 19 504 35 HOH HOH . E 3 HOH B 20 505 37 HOH HOH . E 3 HOH B 21 506 38 HOH HOH . E 3 HOH B 22 507 40 HOH HOH . E 3 HOH B 23 508 43 HOH HOH . E 3 HOH B 24 509 44 HOH HOH . E 3 HOH B 25 510 45 HOH HOH . E 3 HOH B 26 511 46 HOH HOH . E 3 HOH B 27 512 50 HOH HOH . E 3 HOH B 28 513 52 HOH HOH . E 3 HOH B 29 514 53 HOH HOH . E 3 HOH B 30 515 54 HOH HOH . E 3 HOH B 31 516 55 HOH HOH . E 3 HOH B 32 517 56 HOH HOH . E 3 HOH B 33 518 57 HOH HOH . E 3 HOH B 34 519 59 HOH HOH . E 3 HOH B 35 520 60 HOH HOH . E 3 HOH B 36 521 61 HOH HOH . E 3 HOH B 37 522 63 HOH HOH . E 3 HOH B 38 523 65 HOH HOH . E 3 HOH B 39 524 70 HOH HOH . E 3 HOH B 40 525 71 HOH HOH . E 3 HOH B 41 526 73 HOH HOH . E 3 HOH B 42 527 74 HOH HOH . E 3 HOH B 43 528 75 HOH HOH . E 3 HOH B 44 529 81 HOH HOH . E 3 HOH B 45 530 84 HOH HOH . E 3 HOH B 46 531 85 HOH HOH . E 3 HOH B 47 532 87 HOH HOH . E 3 HOH B 48 533 91 HOH HOH . E 3 HOH B 49 534 94 HOH HOH . E 3 HOH B 50 535 97 HOH HOH . E 3 HOH B 51 536 98 HOH HOH . E 3 HOH B 52 537 99 HOH HOH . E 3 HOH B 53 538 100 HOH HOH . E 3 HOH B 54 539 101 HOH HOH . E 3 HOH B 55 540 102 HOH HOH . E 3 HOH B 56 541 103 HOH HOH . E 3 HOH B 57 542 107 HOH HOH . E 3 HOH B 58 543 110 HOH HOH . E 3 HOH B 59 544 111 HOH HOH . E 3 HOH B 60 545 113 HOH HOH . E 3 HOH B 61 546 120 HOH HOH . E 3 HOH B 62 547 121 HOH HOH . E 3 HOH B 63 548 122 HOH HOH . E 3 HOH B 64 549 123 HOH HOH . E 3 HOH B 65 550 124 HOH HOH . E 3 HOH B 66 551 128 HOH HOH . E 3 HOH B 67 552 129 HOH HOH . E 3 HOH B 68 553 131 HOH HOH . E 3 HOH B 69 554 133 HOH HOH . E 3 HOH B 70 555 135 HOH HOH . E 3 HOH B 71 556 136 HOH HOH . E 3 HOH B 72 557 138 HOH HOH . E 3 HOH B 73 558 139 HOH HOH . E 3 HOH B 74 559 147 HOH HOH . E 3 HOH B 75 560 148 HOH HOH . E 3 HOH B 76 561 150 HOH HOH . E 3 HOH B 77 562 154 HOH HOH . E 3 HOH B 78 563 155 HOH HOH . E 3 HOH B 79 564 158 HOH HOH . E 3 HOH B 80 565 159 HOH HOH . E 3 HOH B 81 566 162 HOH HOH . E 3 HOH B 82 567 163 HOH HOH . E 3 HOH B 83 568 166 HOH HOH . E 3 HOH B 84 569 168 HOH HOH . E 3 HOH B 85 570 169 HOH HOH . E 3 HOH B 86 571 172 HOH HOH . E 3 HOH B 87 572 173 HOH HOH . E 3 HOH B 88 573 174 HOH HOH . E 3 HOH B 89 574 175 HOH HOH . E 3 HOH B 90 575 178 HOH HOH . E 3 HOH B 91 576 179 HOH HOH . E 3 HOH B 92 577 181 HOH HOH . E 3 HOH B 93 578 184 HOH HOH . E 3 HOH B 94 579 185 HOH HOH . E 3 HOH B 95 580 186 HOH HOH . E 3 HOH B 96 581 187 HOH HOH . E 3 HOH B 97 582 188 HOH HOH . E 3 HOH B 98 583 189 HOH HOH . E 3 HOH B 99 584 190 HOH HOH . E 3 HOH B 100 585 193 HOH HOH . E 3 HOH B 101 586 194 HOH HOH . E 3 HOH B 102 587 195 HOH HOH . E 3 HOH B 103 588 196 HOH HOH . E 3 HOH B 104 589 199 HOH HOH . E 3 HOH B 105 590 201 HOH HOH . E 3 HOH B 106 591 202 HOH HOH . E 3 HOH B 107 592 204 HOH HOH . E 3 HOH B 108 593 205 HOH HOH . E 3 HOH B 109 594 206 HOH HOH . E 3 HOH B 110 595 207 HOH HOH . E 3 HOH B 111 596 208 HOH HOH . E 3 HOH B 112 597 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 2 37.714 66.401 98.224 1 72.36 ? C1 MPD 3282 A 1 HETATM 2 C C2 MPD . . . C 2 38.918 65.737 97.562 1 57.01 ? C2 MPD 3282 A 1 HETATM 3 O O2 MPD . . . C 2 39.741 65.152 98.6 1 66.43 ? O2 MPD 3282 A 1 HETATM 4 C CM MPD . . . C 2 38.471 64.62 96.61 1 64.38 ? CM MPD 3282 A 1 HETATM 5 C C3 MPD . . . C 2 39.748 66.764 96.791 1 66.21 ? C3 MPD 3282 A 1 HETATM 6 C C4 MPD . . . C 2 40.508 67.696 97.728 1 66.26 ? C4 MPD 3282 A 1 HETATM 7 O O4 MPD . . . C 2 41.4 66.946 98.514 1 65.78 ? O4 MPD 3282 A 1 HETATM 8 C C5 MPD . . . C 2 41.289 68.741 96.936 1 60.32 ? C5 MPD 3282 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #