data_1U0H # _model_server_result.job_id 2_qT8GFxWqpnO1OCre-wFQ _model_server_result.datetime_utc '2024-11-23 11:26:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u0h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":100}' # _entry.id 1U0H # _exptl.entry_id 1U0H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 656.328 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3'-O-(N-METHYLANTHRANILOYL)-GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1U0H _cell.length_a 118.4 _cell.length_b 133 _cell.length_c 70.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U0H _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G O2A ONM . A ONM 100 1_555 D MG MG . A MG 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? metalc ? metalc2 G O3B ONM . A ONM 100 1_555 D MG MG . A MG 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc3 G O1B ONM . A ONM 100 1_555 E MG MG . A MG 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc4 G O1G ONM . A ONM 100 1_555 E MG MG . A MG 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc5 A OD1 ASP 41 A ASP 396 1_555 D MG MG . A MG 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? metalc ? metalc6 A OD2 ASP 41 A ASP 396 1_555 E MG MG . A MG 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc7 A O ILE 42 A ILE 397 1_555 E MG MG . A MG 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc8 A N GLU 43 A GLU 398 1_555 E MG MG . A MG 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? metalc ? metalc9 A OD1 ASP 85 A ASP 440 1_555 D MG MG . A MG 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc10 A OD2 ASP 85 A ASP 440 1_555 E MG MG . A MG 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc11 C OG SER 54 C SER 54 1_555 H MG MG . C MG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc12 C OG1 THR 204 C THR 204 1_555 H MG MG . C MG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc13 J O2G GSP . C GSP 395 1_555 H MG MG . C MG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc14 J O3G GSP . C GSP 395 1_555 H MG MG . C MG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc15 J O2B GSP . C GSP 395 1_555 H MG MG . C MG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? # _chem_comp.formula 'C18 H23 N6 O15 P3' _chem_comp.formula_weight 656.328 _chem_comp.id ONM _chem_comp.mon_nstd_flag . _chem_comp.name "3'-O-(N-METHYLANTHRANILOYL)-GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA7 NA1 ONM sing 352 n n CA7 HA71 ONM sing 353 n n CA7 HA72 ONM sing 354 n n CA7 HA73 ONM sing 355 n n NA1 CA6 ONM sing 356 n n NA1 HA1 ONM sing 357 n n CA6 CA5 ONM doub 358 n y CA6 CA1 ONM sing 359 n y CA5 CA4 ONM sing 360 n y CA5 HA5 ONM sing 361 n n CA4 CA3 ONM doub 362 n y CA4 HA4 ONM sing 363 n n CA3 CA2 ONM sing 364 n y CA3 HA3 ONM sing 365 n n CA2 CA1 ONM doub 366 n y CA2 HA2 ONM sing 367 n n CA1 CA ONM sing 368 n n CA OA ONM doub 369 n n CA O3' ONM sing 370 n n O3' C3' ONM sing 371 n n C3' C2' ONM sing 372 n n C3' C4' ONM sing 373 n n C3' H3' ONM sing 374 n n C2' O2' ONM sing 375 n n C2' C1' ONM sing 376 n n C2' H1 ONM sing 377 n n O2' H2' ONM sing 378 n n C4' C5' ONM sing 379 n n C4' O4' ONM sing 380 n n C4' H4' ONM sing 381 n n C5' O5' ONM sing 382 n n C5' "H5'1" ONM sing 383 n n C5' "H5'2" ONM sing 384 n n O5' PA ONM sing 385 n n PA O3A ONM doub 386 n n PA O2A ONM sing 387 n n PA O1A ONM sing 388 n n O2A H2A ONM sing 389 n n O1A PB ONM sing 390 n n PB O3B ONM doub 391 n n PB O2B ONM sing 392 n n PB O1B ONM sing 393 n n O2B H2B ONM sing 394 n n O1B PG ONM sing 395 n n PG O2G ONM doub 396 n n PG O3G ONM sing 397 n n PG O1G ONM sing 398 n n O3G H3G ONM sing 399 n n O1G H1G ONM sing 400 n n O4' C1' ONM sing 401 n n C1' N9 ONM sing 402 n n C1' H1' ONM sing 403 n n N9 C8 ONM sing 404 n y N9 C4 ONM sing 405 n y C8 N7 ONM doub 406 n y C8 H8 ONM sing 407 n n N7 C5 ONM sing 408 n y C5 C4 ONM doub 409 n y C5 C6 ONM sing 410 n n C4 N3 ONM sing 411 n n N3 C2 ONM doub 412 n n C2 N2 ONM sing 413 n n C2 N1 ONM sing 414 n n N2 HN21 ONM sing 415 n n N2 HN22 ONM sing 416 n n N1 C6 ONM sing 417 n n N1 HN1 ONM sing 418 n n C6 O6 ONM doub 419 n n # _atom_sites.entry_id 1U0H _atom_sites.fract_transf_matrix[1][1] 0.008446 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007519 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014205 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 581 502 MG MG . E 4 MG A 1 582 503 MG MG . F 5 FOK A 1 101 101 FOK FOK . G 6 ONM A 1 100 100 ONM ONM . H 4 MG C 1 396 396 MG MG . I 7 CL C 1 397 397 CL CL . J 8 GSP C 1 395 395 GSP GSP . K 9 HOH A 1 17 17 HOH HOH . K 9 HOH A 2 19 19 HOH HOH . K 9 HOH A 3 37 37 HOH HOH . K 9 HOH A 4 38 38 HOH HOH . L 9 HOH B 1 8 8 HOH HOH . L 9 HOH B 2 15 15 HOH HOH . L 9 HOH B 3 18 18 HOH HOH . L 9 HOH B 4 22 22 HOH HOH . L 9 HOH B 5 26 26 HOH HOH . L 9 HOH B 6 32 32 HOH HOH . L 9 HOH B 7 58 58 HOH HOH . M 9 HOH C 1 398 1 HOH HOH . M 9 HOH C 2 399 2 HOH HOH . M 9 HOH C 3 400 3 HOH HOH . M 9 HOH C 4 401 7 HOH HOH . M 9 HOH C 5 402 39 HOH HOH . M 9 HOH C 6 403 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA7 ONM . . . G 6 66.858 -14.424 54.917 1 68.36 ? CA7 ONM 100 A 1 HETATM 2 N NA1 ONM . . . G 6 65.412 -14.732 54.743 1 68.63 ? NA1 ONM 100 A 1 HETATM 3 C CA6 ONM . . . G 6 64.786 -15.948 54.858 1 67.73 ? CA6 ONM 100 A 1 HETATM 4 C CA5 ONM . . . G 6 65.551 -17.22 55.208 1 67.66 ? CA5 ONM 100 A 1 HETATM 5 C CA4 ONM . . . G 6 64.844 -18.649 55.353 1 67.59 ? CA4 ONM 100 A 1 HETATM 6 C CA3 ONM . . . G 6 63.421 -18.622 55.127 1 65.66 ? CA3 ONM 100 A 1 HETATM 7 C CA2 ONM . . . G 6 62.69 -17.281 54.771 1 67.09 ? CA2 ONM 100 A 1 HETATM 8 C CA1 ONM . . . G 6 63.374 -16.028 54.656 1 69.13 ? CA1 ONM 100 A 1 HETATM 9 C CA ONM . . . G 6 62.494 -14.791 54.301 1 70.01 ? CA ONM 100 A 1 HETATM 10 O OA ONM . . . G 6 63.089 -13.584 53.709 1 71.87 ? OA ONM 100 A 1 HETATM 11 O O3' ONM . . . G 6 61.141 -14.831 54.556 1 70.72 ? O3' ONM 100 A 1 HETATM 12 C C3' ONM . . . G 6 60.179 -13.738 54.284 1 72.25 ? C3' ONM 100 A 1 HETATM 13 C C2' ONM . . . G 6 59.25 -14.181 53.14 1 71.47 ? C2' ONM 100 A 1 HETATM 14 O O2' ONM . . . G 6 59.909 -15.008 52.17 1 68.33 ? O2' ONM 100 A 1 HETATM 15 C C4' ONM . . . G 6 59.18 -13.461 55.461 1 73.61 ? C4' ONM 100 A 1 HETATM 16 C C5' ONM . . . G 6 58.511 -12.106 55.823 1 77.66 ? C5' ONM 100 A 1 HETATM 17 O O5' ONM . . . G 6 58.664 -10.968 54.971 1 80.44 ? O5' ONM 100 A 1 HETATM 18 P PA ONM . . . G 6 57.403 -9.932 54.721 1 81.51 ? PA ONM 100 A 1 HETATM 19 O O3A ONM . . . G 6 57.905 -9.196 53.345 1 89.14 ? O3A ONM 100 A 1 HETATM 20 O O2A ONM . . . G 6 56.17 -10.773 54.504 1 88.09 ? O2A ONM 100 A 1 HETATM 21 O O1A ONM . . . G 6 57.52 -8.795 55.894 1 79.71 ? O1A ONM 100 A 1 HETATM 22 P PB ONM . . . G 6 56.866 -9.014 57.394 1 78.53 ? PB ONM 100 A 1 HETATM 23 O O3B ONM . . . G 6 55.857 -10.31 57.282 1 74.22 ? O3B ONM 100 A 1 HETATM 24 O O2B ONM . . . G 6 55.886 -7.94 57.752 1 79.01 ? O2B ONM 100 A 1 HETATM 25 O O1B ONM . . . G 6 57.865 -9.462 58.459 1 74.85 ? O1B ONM 100 A 1 HETATM 26 P PG ONM . . . G 6 58.82 -8.233 58.643 1 78.37 ? PG ONM 100 A 1 HETATM 27 O O2G ONM . . . G 6 60.399 -8.433 58.469 1 74.61 ? O2G ONM 100 A 1 HETATM 28 O O3G ONM . . . G 6 58.297 -6.765 59.056 1 54.41 ? O3G ONM 100 A 1 HETATM 29 O O1G ONM . . . G 6 58.552 -8.316 60.099 1 76.07 ? O1G ONM 100 A 1 HETATM 30 O O4' ONM . . . G 6 58.157 -14.464 55.303 1 72.17 ? O4' ONM 100 A 1 HETATM 31 C C1' ONM . . . G 6 58.205 -14.939 53.924 1 74.7 ? C1' ONM 100 A 1 HETATM 32 N N9 ONM . . . G 6 56.836 -15.063 53.344 1 79.1 ? N9 ONM 100 A 1 HETATM 33 C C8 ONM . . . G 6 55.872 -14.146 53.143 1 81.77 ? C8 ONM 100 A 1 HETATM 34 N N7 ONM . . . G 6 54.826 -14.716 52.52 1 82.37 ? N7 ONM 100 A 1 HETATM 35 C C5 ONM . . . G 6 55.14 -15.998 52.291 1 82.84 ? C5 ONM 100 A 1 HETATM 36 C C4 ONM . . . G 6 56.427 -16.207 52.798 1 82.39 ? C4 ONM 100 A 1 HETATM 37 N N3 ONM . . . G 6 57.054 -17.441 52.708 1 82.41 ? N3 ONM 100 A 1 HETATM 38 C C2 ONM . . . G 6 56.463 -18.527 52.126 1 81.13 ? C2 ONM 100 A 1 HETATM 39 N N2 ONM . . . G 6 57.104 -19.685 52.068 1 80.24 ? N2 ONM 100 A 1 HETATM 40 N N1 ONM . . . G 6 55.157 -18.391 51.597 1 81.68 ? N1 ONM 100 A 1 HETATM 41 C C6 ONM . . . G 6 54.497 -17.128 51.675 1 82.92 ? C6 ONM 100 A 1 HETATM 42 O O6 ONM . . . G 6 53.366 -17.069 51.195 1 84.87 ? O6 ONM 100 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 42 #