data_1U28 # _model_server_result.job_id BlHBVwhnA34QIymt3qIRZA _model_server_result.datetime_utc '2024-11-18 00:26:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u28 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":600}' # _entry.id 1U28 # _exptl.entry_id 1U28 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1U28 _cell.length_a 71.663 _cell.length_b 73.96 _cell.length_c 204.171 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U28 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 250 n n PA O2A NAD sing 251 n n PA O5B NAD sing 252 n n PA O3 NAD sing 253 n n O2A HOA2 NAD sing 254 n n O5B C5B NAD sing 255 n n C5B C4B NAD sing 256 n n C5B H51A NAD sing 257 n n C5B H52A NAD sing 258 n n C4B O4B NAD sing 259 n n C4B C3B NAD sing 260 n n C4B H4B NAD sing 261 n n O4B C1B NAD sing 262 n n C3B O3B NAD sing 263 n n C3B C2B NAD sing 264 n n C3B H3B NAD sing 265 n n O3B HO3A NAD sing 266 n n C2B O2B NAD sing 267 n n C2B C1B NAD sing 268 n n C2B H2B NAD sing 269 n n O2B HO2A NAD sing 270 n n C1B N9A NAD sing 271 n n C1B H1B NAD sing 272 n n N9A C8A NAD sing 273 n y N9A C4A NAD sing 274 n y C8A N7A NAD doub 275 n y C8A H8A NAD sing 276 n n N7A C5A NAD sing 277 n y C5A C6A NAD sing 278 n y C5A C4A NAD doub 279 n y C6A N6A NAD sing 280 n n C6A N1A NAD doub 281 n y N6A H61A NAD sing 282 n n N6A H62A NAD sing 283 n n N1A C2A NAD sing 284 n y C2A N3A NAD doub 285 n y C2A H2A NAD sing 286 n n N3A C4A NAD sing 287 n y O3 PN NAD sing 288 n n PN O1N NAD doub 289 n n PN O2N NAD sing 290 n n PN O5D NAD sing 291 n n O5D C5D NAD sing 292 n n C5D C4D NAD sing 293 n n C5D H51N NAD sing 294 n n C5D H52N NAD sing 295 n n C4D O4D NAD sing 296 n n C4D C3D NAD sing 297 n n C4D H4D NAD sing 298 n n O4D C1D NAD sing 299 n n C3D O3D NAD sing 300 n n C3D C2D NAD sing 301 n n C3D H3D NAD sing 302 n n O3D HO3N NAD sing 303 n n C2D O2D NAD sing 304 n n C2D C1D NAD sing 305 n n C2D H2D NAD sing 306 n n O2D HO2N NAD sing 307 n n C1D N1N NAD sing 308 n n C1D H1D NAD sing 309 n n N1N C2N NAD sing 310 n y N1N C6N NAD doub 311 n y C2N C3N NAD doub 312 n y C2N H2N NAD sing 313 n n C3N C7N NAD sing 314 n n C3N C4N NAD sing 315 n y C7N O7N NAD doub 316 n n C7N N7N NAD sing 317 n n N7N H71N NAD sing 318 n n N7N H72N NAD sing 319 n n C4N C5N NAD doub 320 n y C4N H4N NAD sing 321 n n C5N C6N NAD sing 322 n y C5N H5N NAD sing 323 n n C6N H6N NAD sing 324 n n # _atom_sites.entry_id 1U28 _atom_sites.fract_transf_matrix[1][1] 0.013954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013521 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAD A 1 500 500 NAD NAD . E 3 NAD B 1 600 600 NAD NAD . F 4 GOL B 1 700 700 GOL GOL . G 4 GOL B 1 800 800 GOL GOL . H 5 NAP C 1 400 400 NAP NAP . I 6 HOH A 1 501 8 HOH HOH . I 6 HOH A 2 502 15 HOH HOH . I 6 HOH A 3 503 17 HOH HOH . I 6 HOH A 4 504 19 HOH HOH . I 6 HOH A 5 505 21 HOH HOH . I 6 HOH A 6 506 26 HOH HOH . I 6 HOH A 7 507 29 HOH HOH . I 6 HOH A 8 508 31 HOH HOH . I 6 HOH A 9 509 33 HOH HOH . I 6 HOH A 10 510 34 HOH HOH . I 6 HOH A 11 511 36 HOH HOH . I 6 HOH A 12 512 38 HOH HOH . I 6 HOH A 13 513 39 HOH HOH . I 6 HOH A 14 514 40 HOH HOH . I 6 HOH A 15 515 42 HOH HOH . I 6 HOH A 16 516 44 HOH HOH . I 6 HOH A 17 517 45 HOH HOH . I 6 HOH A 18 518 47 HOH HOH . I 6 HOH A 19 519 48 HOH HOH . I 6 HOH A 20 520 50 HOH HOH . I 6 HOH A 21 521 52 HOH HOH . I 6 HOH A 22 522 56 HOH HOH . I 6 HOH A 23 523 58 HOH HOH . I 6 HOH A 24 524 60 HOH HOH . I 6 HOH A 25 525 61 HOH HOH . I 6 HOH A 26 526 63 HOH HOH . I 6 HOH A 27 527 64 HOH HOH . I 6 HOH A 28 528 65 HOH HOH . I 6 HOH A 29 529 67 HOH HOH . I 6 HOH A 30 530 69 HOH HOH . I 6 HOH A 31 531 71 HOH HOH . I 6 HOH A 32 532 76 HOH HOH . I 6 HOH A 33 533 82 HOH HOH . I 6 HOH A 34 534 83 HOH HOH . I 6 HOH A 35 535 95 HOH HOH . I 6 HOH A 36 536 98 HOH HOH . I 6 HOH A 37 537 99 HOH HOH . I 6 HOH A 38 538 104 HOH HOH . I 6 HOH A 39 539 106 HOH HOH . J 6 HOH B 1 801 1 HOH HOH . J 6 HOH B 2 802 2 HOH HOH . J 6 HOH B 3 803 3 HOH HOH . J 6 HOH B 4 804 4 HOH HOH . J 6 HOH B 5 805 5 HOH HOH . J 6 HOH B 6 806 6 HOH HOH . J 6 HOH B 7 807 7 HOH HOH . J 6 HOH B 8 808 9 HOH HOH . J 6 HOH B 9 809 10 HOH HOH . J 6 HOH B 10 810 11 HOH HOH . J 6 HOH B 11 811 12 HOH HOH . J 6 HOH B 12 812 13 HOH HOH . J 6 HOH B 13 813 14 HOH HOH . J 6 HOH B 14 814 16 HOH HOH . J 6 HOH B 15 815 18 HOH HOH . J 6 HOH B 16 816 20 HOH HOH . J 6 HOH B 17 817 22 HOH HOH . J 6 HOH B 18 818 23 HOH HOH . J 6 HOH B 19 819 24 HOH HOH . J 6 HOH B 20 820 25 HOH HOH . J 6 HOH B 21 821 27 HOH HOH . J 6 HOH B 22 822 28 HOH HOH . J 6 HOH B 23 823 30 HOH HOH . J 6 HOH B 24 824 32 HOH HOH . J 6 HOH B 25 825 35 HOH HOH . J 6 HOH B 26 826 37 HOH HOH . J 6 HOH B 27 827 43 HOH HOH . J 6 HOH B 28 828 46 HOH HOH . J 6 HOH B 29 829 49 HOH HOH . J 6 HOH B 30 830 51 HOH HOH . J 6 HOH B 31 831 53 HOH HOH . J 6 HOH B 32 832 54 HOH HOH . J 6 HOH B 33 833 55 HOH HOH . J 6 HOH B 34 834 57 HOH HOH . J 6 HOH B 35 835 59 HOH HOH . J 6 HOH B 36 836 62 HOH HOH . J 6 HOH B 37 837 70 HOH HOH . J 6 HOH B 38 838 72 HOH HOH . J 6 HOH B 39 839 73 HOH HOH . J 6 HOH B 40 840 74 HOH HOH . J 6 HOH B 41 841 75 HOH HOH . J 6 HOH B 42 842 77 HOH HOH . J 6 HOH B 43 843 78 HOH HOH . J 6 HOH B 44 844 80 HOH HOH . J 6 HOH B 45 845 81 HOH HOH . J 6 HOH B 46 846 84 HOH HOH . J 6 HOH B 47 847 85 HOH HOH . J 6 HOH B 48 848 86 HOH HOH . J 6 HOH B 49 849 87 HOH HOH . J 6 HOH B 50 850 88 HOH HOH . J 6 HOH B 51 851 89 HOH HOH . J 6 HOH B 52 852 90 HOH HOH . J 6 HOH B 53 853 91 HOH HOH . J 6 HOH B 54 854 93 HOH HOH . J 6 HOH B 55 855 94 HOH HOH . J 6 HOH B 56 856 96 HOH HOH . J 6 HOH B 57 857 97 HOH HOH . J 6 HOH B 58 858 100 HOH HOH . J 6 HOH B 59 859 101 HOH HOH . J 6 HOH B 60 860 102 HOH HOH . J 6 HOH B 61 861 103 HOH HOH . J 6 HOH B 62 862 105 HOH HOH . J 6 HOH B 63 863 107 HOH HOH . J 6 HOH B 64 864 109 HOH HOH . K 6 HOH C 1 401 41 HOH HOH . K 6 HOH C 2 402 66 HOH HOH . K 6 HOH C 3 403 68 HOH HOH . K 6 HOH C 4 404 79 HOH HOH . K 6 HOH C 5 405 92 HOH HOH . K 6 HOH C 6 406 108 HOH HOH . K 6 HOH C 7 407 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 3 -16.174 -39.349 25.711 1 70.38 ? PA NAD 600 B 1 HETATM 2 O O1A NAD . . . E 3 -16.538 -38.63 26.992 1 67.74 ? O1A NAD 600 B 1 HETATM 3 O O2A NAD . . . E 3 -16.547 -40.81 25.548 1 71.89 ? O2A NAD 600 B 1 HETATM 4 O O5B NAD . . . E 3 -14.577 -39.241 25.46 1 68.92 ? O5B NAD 600 B 1 HETATM 5 C C5B NAD . . . E 3 -14.002 -38.194 24.679 1 67.42 ? C5B NAD 600 B 1 HETATM 6 C C4B NAD . . . E 3 -13.023 -38.698 23.619 1 68.48 ? C4B NAD 600 B 1 HETATM 7 O O4B NAD . . . E 3 -11.89 -39.31 24.234 1 69.45 ? O4B NAD 600 B 1 HETATM 8 C C3B NAD . . . E 3 -13.57 -39.721 22.622 1 69.62 ? C3B NAD 600 B 1 HETATM 9 O O3B NAD . . . E 3 -13.622 -39.14 21.311 1 68.33 ? O3B NAD 600 B 1 HETATM 10 C C2B NAD . . . E 3 -12.587 -40.887 22.668 1 71.56 ? C2B NAD 600 B 1 HETATM 11 O O2B NAD . . . E 3 -12.245 -41.424 21.382 1 72.74 ? O2B NAD 600 B 1 HETATM 12 C C1B NAD . . . E 3 -11.363 -40.265 23.321 1 71.42 ? C1B NAD 600 B 1 HETATM 13 N N9A NAD . . . E 3 -10.465 -41.241 23.992 1 73.26 ? N9A NAD 600 B 1 HETATM 14 C C8A NAD . . . E 3 -10.799 -42.225 24.859 1 74.02 ? C8A NAD 600 B 1 HETATM 15 N N7A NAD . . . E 3 -9.686 -42.903 25.252 1 75.63 ? N7A NAD 600 B 1 HETATM 16 C C5A NAD . . . E 3 -8.622 -42.347 24.634 1 75.78 ? C5A NAD 600 B 1 HETATM 17 C C6A NAD . . . E 3 -7.152 -42.566 24.59 1 77.63 ? C6A NAD 600 B 1 HETATM 18 N N6A NAD . . . E 3 -6.559 -43.551 25.317 1 79.36 ? N6A NAD 600 B 1 HETATM 19 N N1A NAD . . . E 3 -6.417 -41.74 23.797 1 77.21 ? N1A NAD 600 B 1 HETATM 20 C C2A NAD . . . E 3 -6.968 -40.746 23.064 1 75.19 ? C2A NAD 600 B 1 HETATM 21 N N3A NAD . . . E 3 -8.29 -40.502 23.059 1 73.49 ? N3A NAD 600 B 1 HETATM 22 C C4A NAD . . . E 3 -9.145 -41.249 23.804 1 73.97 ? C4A NAD 600 B 1 HETATM 23 O O3 NAD . . . E 3 -16.793 -38.546 24.442 1 71.04 ? O3 NAD 600 B 1 HETATM 24 P PN NAD . . . E 3 -18.35 -38.166 24.205 1 71.34 ? PN NAD 600 B 1 HETATM 25 O O1N NAD . . . E 3 -18.48 -36.771 24.769 1 70.46 ? O1N NAD 600 B 1 HETATM 26 O O2N NAD . . . E 3 -19.149 -39.209 24.954 1 73.16 ? O2N NAD 600 B 1 HETATM 27 O O5D NAD . . . E 3 -18.531 -38.24 22.705 1 72.2 ? O5D NAD 600 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 27 #