data_1U28 # _model_server_result.job_id T-X1f2sFoHtfnq5TiV8EKg _model_server_result.datetime_utc '2024-11-18 00:36:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u28 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":800}' # _entry.id 1U28 # _exptl.entry_id 1U28 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1U28 _cell.length_a 71.663 _cell.length_b 73.96 _cell.length_c 204.171 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U28 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1U28 _atom_sites.fract_transf_matrix[1][1] 0.013954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013521 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAD A 1 500 500 NAD NAD . E 3 NAD B 1 600 600 NAD NAD . F 4 GOL B 1 700 700 GOL GOL . G 4 GOL B 1 800 800 GOL GOL . H 5 NAP C 1 400 400 NAP NAP . I 6 HOH A 1 501 8 HOH HOH . I 6 HOH A 2 502 15 HOH HOH . I 6 HOH A 3 503 17 HOH HOH . I 6 HOH A 4 504 19 HOH HOH . I 6 HOH A 5 505 21 HOH HOH . I 6 HOH A 6 506 26 HOH HOH . I 6 HOH A 7 507 29 HOH HOH . I 6 HOH A 8 508 31 HOH HOH . I 6 HOH A 9 509 33 HOH HOH . I 6 HOH A 10 510 34 HOH HOH . I 6 HOH A 11 511 36 HOH HOH . I 6 HOH A 12 512 38 HOH HOH . I 6 HOH A 13 513 39 HOH HOH . I 6 HOH A 14 514 40 HOH HOH . I 6 HOH A 15 515 42 HOH HOH . I 6 HOH A 16 516 44 HOH HOH . I 6 HOH A 17 517 45 HOH HOH . I 6 HOH A 18 518 47 HOH HOH . I 6 HOH A 19 519 48 HOH HOH . I 6 HOH A 20 520 50 HOH HOH . I 6 HOH A 21 521 52 HOH HOH . I 6 HOH A 22 522 56 HOH HOH . I 6 HOH A 23 523 58 HOH HOH . I 6 HOH A 24 524 60 HOH HOH . I 6 HOH A 25 525 61 HOH HOH . I 6 HOH A 26 526 63 HOH HOH . I 6 HOH A 27 527 64 HOH HOH . I 6 HOH A 28 528 65 HOH HOH . I 6 HOH A 29 529 67 HOH HOH . I 6 HOH A 30 530 69 HOH HOH . I 6 HOH A 31 531 71 HOH HOH . I 6 HOH A 32 532 76 HOH HOH . I 6 HOH A 33 533 82 HOH HOH . I 6 HOH A 34 534 83 HOH HOH . I 6 HOH A 35 535 95 HOH HOH . I 6 HOH A 36 536 98 HOH HOH . I 6 HOH A 37 537 99 HOH HOH . I 6 HOH A 38 538 104 HOH HOH . I 6 HOH A 39 539 106 HOH HOH . J 6 HOH B 1 801 1 HOH HOH . J 6 HOH B 2 802 2 HOH HOH . J 6 HOH B 3 803 3 HOH HOH . J 6 HOH B 4 804 4 HOH HOH . J 6 HOH B 5 805 5 HOH HOH . J 6 HOH B 6 806 6 HOH HOH . J 6 HOH B 7 807 7 HOH HOH . J 6 HOH B 8 808 9 HOH HOH . J 6 HOH B 9 809 10 HOH HOH . J 6 HOH B 10 810 11 HOH HOH . J 6 HOH B 11 811 12 HOH HOH . J 6 HOH B 12 812 13 HOH HOH . J 6 HOH B 13 813 14 HOH HOH . J 6 HOH B 14 814 16 HOH HOH . J 6 HOH B 15 815 18 HOH HOH . J 6 HOH B 16 816 20 HOH HOH . J 6 HOH B 17 817 22 HOH HOH . J 6 HOH B 18 818 23 HOH HOH . J 6 HOH B 19 819 24 HOH HOH . J 6 HOH B 20 820 25 HOH HOH . J 6 HOH B 21 821 27 HOH HOH . J 6 HOH B 22 822 28 HOH HOH . J 6 HOH B 23 823 30 HOH HOH . J 6 HOH B 24 824 32 HOH HOH . J 6 HOH B 25 825 35 HOH HOH . J 6 HOH B 26 826 37 HOH HOH . J 6 HOH B 27 827 43 HOH HOH . J 6 HOH B 28 828 46 HOH HOH . J 6 HOH B 29 829 49 HOH HOH . J 6 HOH B 30 830 51 HOH HOH . J 6 HOH B 31 831 53 HOH HOH . J 6 HOH B 32 832 54 HOH HOH . J 6 HOH B 33 833 55 HOH HOH . J 6 HOH B 34 834 57 HOH HOH . J 6 HOH B 35 835 59 HOH HOH . J 6 HOH B 36 836 62 HOH HOH . J 6 HOH B 37 837 70 HOH HOH . J 6 HOH B 38 838 72 HOH HOH . J 6 HOH B 39 839 73 HOH HOH . J 6 HOH B 40 840 74 HOH HOH . J 6 HOH B 41 841 75 HOH HOH . J 6 HOH B 42 842 77 HOH HOH . J 6 HOH B 43 843 78 HOH HOH . J 6 HOH B 44 844 80 HOH HOH . J 6 HOH B 45 845 81 HOH HOH . J 6 HOH B 46 846 84 HOH HOH . J 6 HOH B 47 847 85 HOH HOH . J 6 HOH B 48 848 86 HOH HOH . J 6 HOH B 49 849 87 HOH HOH . J 6 HOH B 50 850 88 HOH HOH . J 6 HOH B 51 851 89 HOH HOH . J 6 HOH B 52 852 90 HOH HOH . J 6 HOH B 53 853 91 HOH HOH . J 6 HOH B 54 854 93 HOH HOH . J 6 HOH B 55 855 94 HOH HOH . J 6 HOH B 56 856 96 HOH HOH . J 6 HOH B 57 857 97 HOH HOH . J 6 HOH B 58 858 100 HOH HOH . J 6 HOH B 59 859 101 HOH HOH . J 6 HOH B 60 860 102 HOH HOH . J 6 HOH B 61 861 103 HOH HOH . J 6 HOH B 62 862 105 HOH HOH . J 6 HOH B 63 863 107 HOH HOH . J 6 HOH B 64 864 109 HOH HOH . K 6 HOH C 1 401 41 HOH HOH . K 6 HOH C 2 402 66 HOH HOH . K 6 HOH C 3 403 68 HOH HOH . K 6 HOH C 4 404 79 HOH HOH . K 6 HOH C 5 405 92 HOH HOH . K 6 HOH C 6 406 108 HOH HOH . K 6 HOH C 7 407 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 -22.708 -39.189 40.126 1 66.45 ? C1 GOL 800 B 1 HETATM 2 O O1 GOL . . . G 4 -21.807 -39.545 39.096 1 66.98 ? O1 GOL 800 B 1 HETATM 3 C C2 GOL . . . G 4 -24.021 -38.652 39.537 1 65.24 ? C2 GOL 800 B 1 HETATM 4 O O2 GOL . . . G 4 -24.079 -38.853 38.134 1 66.3 ? O2 GOL 800 B 1 HETATM 5 C C3 GOL . . . G 4 -24.193 -37.165 39.821 1 62.39 ? C3 GOL 800 B 1 HETATM 6 O O3 GOL . . . G 4 -24.544 -36.938 41.163 1 61.8 ? O3 GOL 800 B 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 61 _model_server_stats.create_model_time_ms 101 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #