data_1U29 # _model_server_result.job_id YZkyYuoheEP9u2EhFm5Q-Q _model_server_result.datetime_utc '2024-10-31 07:24:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u29 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 1U29 # _exptl.entry_id 1U29 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 420.096 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1U29 _cell.length_a 42.998 _cell.length_b 56.378 _cell.length_c 57.091 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U29 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H15 O15 P3' _chem_comp.formula_weight 420.096 _chem_comp.id I3P _chem_comp.mon_nstd_flag . _chem_comp.name D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 I3P sing 152 n n C1 C6 I3P sing 153 n n C1 O1 I3P sing 154 n n C1 H1 I3P sing 155 n n C2 C3 I3P sing 156 n n C2 O2 I3P sing 157 n n C2 H2 I3P sing 158 n n C3 C4 I3P sing 159 n n C3 O3 I3P sing 160 n n C3 H3 I3P sing 161 n n C4 C5 I3P sing 162 n n C4 O4 I3P sing 163 n n C4 H4 I3P sing 164 n n C5 C6 I3P sing 165 n n C5 O5 I3P sing 166 n n C5 H5 I3P sing 167 n n C6 O6 I3P sing 168 n n C6 H6 I3P sing 169 n n O1 P1 I3P sing 170 n n O2 HO2 I3P sing 171 n n O3 HO3 I3P sing 172 n n O4 P4 I3P sing 173 n n O5 P5 I3P sing 174 n n O6 HO6 I3P sing 175 n n P1 O11 I3P doub 176 n n P1 O12 I3P sing 177 n n P1 O13 I3P sing 178 n n O12 HO12 I3P sing 179 n n O13 HO13 I3P sing 180 n n P4 O41 I3P doub 181 n n P4 O42 I3P sing 182 n n P4 O43 I3P sing 183 n n O42 HO42 I3P sing 184 n n O43 HO43 I3P sing 185 n n P5 O51 I3P doub 186 n n P5 O52 I3P sing 187 n n P5 O53 I3P sing 188 n n O52 HO52 I3P sing 189 n n O53 HO53 I3P sing 190 n n # _atom_sites.entry_id 1U29 _atom_sites.fract_transf_matrix[1][1] 0.023257 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017737 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 I3P A 1 101 101 I3P I3P . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 17 17 HOH HOH . C 3 HOH A 18 18 18 HOH HOH . C 3 HOH A 19 19 19 HOH HOH . C 3 HOH A 20 20 20 HOH HOH . C 3 HOH A 21 21 21 HOH HOH . C 3 HOH A 22 22 22 HOH HOH . C 3 HOH A 23 23 23 HOH HOH . C 3 HOH A 24 24 24 HOH HOH . C 3 HOH A 25 25 25 HOH HOH . C 3 HOH A 26 26 26 HOH HOH . C 3 HOH A 27 27 27 HOH HOH . C 3 HOH A 28 28 28 HOH HOH . C 3 HOH A 29 29 29 HOH HOH . C 3 HOH A 30 31 31 HOH HOH . C 3 HOH A 31 32 32 HOH HOH . C 3 HOH A 32 33 33 HOH HOH . C 3 HOH A 33 34 34 HOH HOH . C 3 HOH A 34 35 35 HOH HOH . C 3 HOH A 35 36 36 HOH HOH . C 3 HOH A 36 37 37 HOH HOH . C 3 HOH A 37 38 38 HOH HOH . C 3 HOH A 38 39 39 HOH HOH . C 3 HOH A 39 40 40 HOH HOH . C 3 HOH A 40 41 41 HOH HOH . C 3 HOH A 41 42 42 HOH HOH . C 3 HOH A 42 43 43 HOH HOH . C 3 HOH A 43 44 44 HOH HOH . C 3 HOH A 44 45 45 HOH HOH . C 3 HOH A 45 46 46 HOH HOH . C 3 HOH A 46 47 47 HOH HOH . C 3 HOH A 47 48 48 HOH HOH . C 3 HOH A 48 49 49 HOH HOH . C 3 HOH A 49 50 50 HOH HOH . C 3 HOH A 50 52 52 HOH HOH . C 3 HOH A 51 53 53 HOH HOH . C 3 HOH A 52 54 54 HOH HOH . C 3 HOH A 53 55 55 HOH HOH . C 3 HOH A 54 59 59 HOH HOH . C 3 HOH A 55 60 60 HOH HOH . C 3 HOH A 56 62 62 HOH HOH . C 3 HOH A 57 63 63 HOH HOH . C 3 HOH A 58 64 64 HOH HOH . C 3 HOH A 59 65 65 HOH HOH . C 3 HOH A 60 66 66 HOH HOH . C 3 HOH A 61 67 67 HOH HOH . C 3 HOH A 62 68 68 HOH HOH . C 3 HOH A 63 69 69 HOH HOH . C 3 HOH A 64 70 70 HOH HOH . C 3 HOH A 65 71 71 HOH HOH . C 3 HOH A 66 72 72 HOH HOH . C 3 HOH A 67 73 73 HOH HOH . C 3 HOH A 68 74 74 HOH HOH . C 3 HOH A 69 75 75 HOH HOH . C 3 HOH A 70 76 76 HOH HOH . C 3 HOH A 71 77 77 HOH HOH . C 3 HOH A 72 78 78 HOH HOH . C 3 HOH A 73 79 79 HOH HOH . C 3 HOH A 74 81 81 HOH HOH . C 3 HOH A 75 82 82 HOH HOH . C 3 HOH A 76 83 83 HOH HOH . C 3 HOH A 77 84 84 HOH HOH . C 3 HOH A 78 85 85 HOH HOH . C 3 HOH A 79 86 86 HOH HOH . C 3 HOH A 80 87 87 HOH HOH . C 3 HOH A 81 88 88 HOH HOH . C 3 HOH A 82 89 89 HOH HOH . C 3 HOH A 83 93 93 HOH HOH . C 3 HOH A 84 94 94 HOH HOH . C 3 HOH A 85 96 96 HOH HOH . C 3 HOH A 86 97 97 HOH HOH . C 3 HOH A 87 98 98 HOH HOH . C 3 HOH A 88 102 102 HOH HOH . C 3 HOH A 89 103 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I3P . . . B 2 6.891 28.559 1.235 1 27.73 ? C1 I3P 101 A 1 HETATM 2 C C2 I3P . . . B 2 7.493 29.928 1.455 1 26.5 ? C2 I3P 101 A 1 HETATM 3 C C3 I3P . . . B 2 7.571 30.269 2.935 1 26.67 ? C3 I3P 101 A 1 HETATM 4 C C4 I3P . . . B 2 8.403 29.242 3.69 1 24.82 ? C4 I3P 101 A 1 HETATM 5 C C5 I3P . . . B 2 7.922 27.834 3.367 1 25.9 ? C5 I3P 101 A 1 HETATM 6 C C6 I3P . . . B 2 7.749 27.492 1.891 1 25.62 ? C6 I3P 101 A 1 HETATM 7 O O1 I3P . . . B 2 6.837 28.268 -0.151 1 29.63 ? O1 I3P 101 A 1 HETATM 8 O O2 I3P . . . B 2 8.798 29.955 0.906 1 28.88 ? O2 I3P 101 A 1 HETATM 9 O O3 I3P . . . B 2 8.16 31.535 3.053 1 27.41 ? O3 I3P 101 A 1 HETATM 10 O O4 I3P . . . B 2 8.202 29.39 5.1 1 26.7 ? O4 I3P 101 A 1 HETATM 11 O O5 I3P . . . B 2 8.85 26.948 3.975 1 23.38 ? O5 I3P 101 A 1 HETATM 12 O O6 I3P . . . B 2 7.094 26.236 1.752 1 26.94 ? O6 I3P 101 A 1 HETATM 13 P P1 I3P . . . B 2 5.484 28.502 -0.98 1 31.86 ? P1 I3P 101 A 1 HETATM 14 O O11 I3P . . . B 2 5.801 27.891 -2.408 1 30.73 ? O11 I3P 101 A 1 HETATM 15 O O12 I3P . . . B 2 5.257 30.074 -1.095 1 35.26 ? O12 I3P 101 A 1 HETATM 16 O O13 I3P . . . B 2 4.266 27.758 -0.294 1 32.6 ? O13 I3P 101 A 1 HETATM 17 P P4 I3P . . . B 2 9.15 30.268 6.063 1 26.34 ? P4 I3P 101 A 1 HETATM 18 O O41 I3P . . . B 2 8.599 29.916 7.478 1 27.04 ? O41 I3P 101 A 1 HETATM 19 O O42 I3P . . . B 2 10.678 29.913 5.864 1 26.38 ? O42 I3P 101 A 1 HETATM 20 O O43 I3P . . . B 2 8.991 31.808 5.73 1 27.01 ? O43 I3P 101 A 1 HETATM 21 P P5 I3P . . . B 2 8.394 25.56 4.612 1 25.97 ? P5 I3P 101 A 1 HETATM 22 O O51 I3P . . . B 2 9.618 25.01 5.435 1 25.37 ? O51 I3P 101 A 1 HETATM 23 O O52 I3P . . . B 2 7.16 25.827 5.561 1 24.16 ? O52 I3P 101 A 1 HETATM 24 O O53 I3P . . . B 2 7.972 24.494 3.526 1 24.09 ? O53 I3P 101 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 24 #