data_1U2D # _model_server_result.job_id zi3wR_VF3_0Gj7vhSDBnJQ _model_server_result.datetime_utc '2024-10-18 20:24:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u2d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":400}' # _entry.id 1U2D # _exptl.entry_id 1U2D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1U2D _cell.length_a 72.249 _cell.length_b 74.546 _cell.length_c 204.163 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U2D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 325 n n PA O2A NDP sing 326 n n PA O5B NDP sing 327 n n PA O3 NDP sing 328 n n O2A HOA2 NDP sing 329 n n O5B C5B NDP sing 330 n n C5B C4B NDP sing 331 n n C5B H51A NDP sing 332 n n C5B H52A NDP sing 333 n n C4B O4B NDP sing 334 n n C4B C3B NDP sing 335 n n C4B H4B NDP sing 336 n n O4B C1B NDP sing 337 n n C3B O3B NDP sing 338 n n C3B C2B NDP sing 339 n n C3B H3B NDP sing 340 n n O3B HO3A NDP sing 341 n n C2B O2B NDP sing 342 n n C2B C1B NDP sing 343 n n C2B H2B NDP sing 344 n n O2B P2B NDP sing 345 n n C1B N9A NDP sing 346 n n C1B H1B NDP sing 347 n n N9A C8A NDP sing 348 n y N9A C4A NDP sing 349 n y C8A N7A NDP doub 350 n y C8A H8A NDP sing 351 n n N7A C5A NDP sing 352 n y C5A C6A NDP sing 353 n y C5A C4A NDP doub 354 n y C6A N6A NDP sing 355 n n C6A N1A NDP doub 356 n y N6A H61A NDP sing 357 n n N6A H62A NDP sing 358 n n N1A C2A NDP sing 359 n y C2A N3A NDP doub 360 n y C2A H2A NDP sing 361 n n N3A C4A NDP sing 362 n y O3 PN NDP sing 363 n n PN O1N NDP doub 364 n n PN O2N NDP sing 365 n n PN O5D NDP sing 366 n n O2N H21N NDP sing 367 n n O5D C5D NDP sing 368 n n C5D C4D NDP sing 369 n n C5D H51N NDP sing 370 n n C5D H52N NDP sing 371 n n C4D O4D NDP sing 372 n n C4D C3D NDP sing 373 n n C4D H4D NDP sing 374 n n O4D C1D NDP sing 375 n n C3D O3D NDP sing 376 n n C3D C2D NDP sing 377 n n C3D H3D NDP sing 378 n n O3D HO3N NDP sing 379 n n C2D O2D NDP sing 380 n n C2D C1D NDP sing 381 n n C2D H2D NDP sing 382 n n O2D HO2N NDP sing 383 n n C1D N1N NDP sing 384 n n C1D H1D NDP sing 385 n n N1N C2N NDP sing 386 n n N1N C6N NDP sing 387 n n C2N C3N NDP doub 388 n n C2N H2N NDP sing 389 n n C3N C7N NDP sing 390 n n C3N C4N NDP sing 391 n n C7N O7N NDP doub 392 n n C7N N7N NDP sing 393 n n N7N H71N NDP sing 394 n n N7N H72N NDP sing 395 n n C4N C5N NDP sing 396 n n C4N H41N NDP sing 397 n n C4N H42N NDP sing 398 n n C5N C6N NDP doub 399 n n C5N H5N NDP sing 400 n n C6N H6N NDP sing 401 n n P2B O1X NDP doub 402 n n P2B O2X NDP sing 403 n n P2B O3X NDP sing 404 n n O2X HOP2 NDP sing 405 n n O3X HOP3 NDP sing 406 n n # _atom_sites.entry_id 1U2D _atom_sites.fract_transf_matrix[1][1] 0.013841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013414 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAD A 1 500 500 NAD NAD . E 3 NAD B 1 600 600 NAD NAD . F 4 GOL B 1 404 4 GOL GOL . G 5 NDP C 1 400 400 NDP NDP . H 6 HOH A 1 501 1 HOH HOH . H 6 HOH A 2 502 3 HOH HOH . H 6 HOH A 3 503 5 HOH HOH . H 6 HOH A 4 504 8 HOH HOH . H 6 HOH A 5 505 9 HOH HOH . H 6 HOH A 6 506 14 HOH HOH . H 6 HOH A 7 507 17 HOH HOH . H 6 HOH A 8 508 24 HOH HOH . H 6 HOH A 9 509 26 HOH HOH . H 6 HOH A 10 510 29 HOH HOH . H 6 HOH A 11 511 32 HOH HOH . H 6 HOH A 12 512 34 HOH HOH . H 6 HOH A 13 513 38 HOH HOH . H 6 HOH A 14 514 49 HOH HOH . H 6 HOH A 15 515 40 HOH HOH . I 6 HOH B 1 601 2 HOH HOH . I 6 HOH B 2 602 4 HOH HOH . I 6 HOH B 3 603 10 HOH HOH . I 6 HOH B 4 604 12 HOH HOH . I 6 HOH B 5 605 13 HOH HOH . I 6 HOH B 6 606 15 HOH HOH . I 6 HOH B 7 607 16 HOH HOH . I 6 HOH B 8 608 18 HOH HOH . I 6 HOH B 9 609 20 HOH HOH . I 6 HOH B 10 610 21 HOH HOH . I 6 HOH B 11 611 23 HOH HOH . I 6 HOH B 12 612 27 HOH HOH . I 6 HOH B 13 613 28 HOH HOH . I 6 HOH B 14 614 31 HOH HOH . I 6 HOH B 15 615 33 HOH HOH . I 6 HOH B 16 616 35 HOH HOH . I 6 HOH B 17 617 37 HOH HOH . I 6 HOH B 18 618 41 HOH HOH . J 6 HOH C 1 401 6 HOH HOH . J 6 HOH C 2 402 7 HOH HOH . J 6 HOH C 3 403 11 HOH HOH . J 6 HOH C 4 404 19 HOH HOH . J 6 HOH C 5 405 22 HOH HOH . J 6 HOH C 6 406 25 HOH HOH . J 6 HOH C 7 407 30 HOH HOH . J 6 HOH C 8 408 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . G 5 -25.196 -36.164 7.698 1 54.51 ? PA NDP 400 C 1 HETATM 2 O O1A NDP . . . G 5 -26.547 -36.827 7.6 1 54.85 ? O1A NDP 400 C 1 HETATM 3 O O2A NDP . . . G 5 -24.259 -36.603 8.792 1 54.66 ? O2A NDP 400 C 1 HETATM 4 O O5B NDP . . . G 5 -24.44 -36.313 6.288 1 55.15 ? O5B NDP 400 C 1 HETATM 5 C C5B NDP . . . G 5 -24.075 -35.159 5.527 1 54.69 ? C5B NDP 400 C 1 HETATM 6 C C4B NDP . . . G 5 -23.784 -35.543 4.084 1 56.12 ? C4B NDP 400 C 1 HETATM 7 O O4B NDP . . . G 5 -22.853 -34.606 3.511 1 55.7 ? O4B NDP 400 C 1 HETATM 8 C C3B NDP . . . G 5 -23.213 -36.963 3.976 1 57.96 ? C3B NDP 400 C 1 HETATM 9 O O3B NDP . . . G 5 -24.185 -37.875 3.477 1 59.22 ? O3B NDP 400 C 1 HETATM 10 C C2B NDP . . . G 5 -22.02 -36.866 3.052 1 58.9 ? C2B NDP 400 C 1 HETATM 11 O O2B NDP . . . G 5 -22.342 -37.383 1.767 1 61.31 ? O2B NDP 400 C 1 HETATM 12 C C1B NDP . . . G 5 -21.755 -35.369 2.999 1 56.74 ? C1B NDP 400 C 1 HETATM 13 N N9A NDP . . . G 5 -20.358 -34.878 2.839 1 56.67 ? N9A NDP 400 C 1 HETATM 14 C C8A NDP . . . G 5 -19.27 -35.281 3.548 1 57.13 ? C8A NDP 400 C 1 HETATM 15 N N7A NDP . . . G 5 -18.128 -34.628 3.156 1 57.52 ? N7A NDP 400 C 1 HETATM 16 C C5A NDP . . . G 5 -18.48 -33.783 2.175 1 56.94 ? C5A NDP 400 C 1 HETATM 17 C C6A NDP . . . G 5 -17.853 -32.781 1.283 1 57.22 ? C6A NDP 400 C 1 HETATM 18 N N6A NDP . . . G 5 -16.526 -32.551 1.383 1 57.98 ? N6A NDP 400 C 1 HETATM 19 N N1A NDP . . . G 5 -18.618 -32.112 0.382 1 57.11 ? N1A NDP 400 C 1 HETATM 20 C C2A NDP . . . G 5 -19.947 -32.315 0.25 1 56.69 ? C2A NDP 400 C 1 HETATM 21 N N3A NDP . . . G 5 -20.626 -33.199 1.007 1 56.36 ? N3A NDP 400 C 1 HETATM 22 C C4A NDP . . . G 5 -19.906 -33.962 1.994 1 56.48 ? C4A NDP 400 C 1 HETATM 23 O O3 NDP . . . G 5 -25.362 -34.556 7.752 1 52.92 ? O3 NDP 400 C 1 HETATM 24 P PN NDP . . . G 5 -26.247 -33.77 8.841 1 51.97 ? PN NDP 400 C 1 HETATM 25 O O1N NDP . . . G 5 -27.45 -33.213 8.117 1 51.99 ? O1N NDP 400 C 1 HETATM 26 O O2N NDP . . . G 5 -25.331 -32.824 9.582 1 51.68 ? O2N NDP 400 C 1 HETATM 27 O O5D NDP . . . G 5 -26.732 -34.958 9.817 1 52.59 ? O5D NDP 400 C 1 HETATM 28 C C5D NDP . . . G 5 -26.654 -34.869 11.233 1 52.7 ? C5D NDP 400 C 1 HETATM 29 C C4D NDP . . . G 5 -26.439 -36.264 11.807 1 53.96 ? C4D NDP 400 C 1 HETATM 30 O O4D NDP . . . G 5 -25.276 -36.26 12.644 1 53.85 ? O4D NDP 400 C 1 HETATM 31 C C3D NDP . . . G 5 -27.603 -36.734 12.675 1 54.87 ? C3D NDP 400 C 1 HETATM 32 O O3D NDP . . . G 5 -27.873 -38.11 12.439 1 56.44 ? O3D NDP 400 C 1 HETATM 33 C C2D NDP . . . G 5 -27.101 -36.528 14.085 1 54.88 ? C2D NDP 400 C 1 HETATM 34 O O2D NDP . . . G 5 -27.758 -37.359 15.031 1 56.3 ? O2D NDP 400 C 1 HETATM 35 C C1D NDP . . . G 5 -25.627 -36.875 13.886 1 54.91 ? C1D NDP 400 C 1 HETATM 36 N N1N NDP . . . G 5 -24.786 -36.444 15.006 1 54.91 ? N1N NDP 400 C 1 HETATM 37 C C2N NDP . . . G 5 -24.861 -35.243 15.423 1 54.16 ? C2N NDP 400 C 1 HETATM 38 C C3N NDP . . . G 5 -24.139 -34.777 16.455 1 54.3 ? C3N NDP 400 C 1 HETATM 39 C C7N NDP . . . G 5 -24.296 -33.39 16.883 1 53.71 ? C7N NDP 400 C 1 HETATM 40 O O7N NDP . . . G 5 -24.204 -33.124 18.072 1 54.52 ? O7N NDP 400 C 1 HETATM 41 N N7N NDP . . . G 5 -24.554 -32.452 15.971 1 52.76 ? N7N NDP 400 C 1 HETATM 42 C C4N NDP . . . G 5 -23.179 -35.682 17.181 1 55.48 ? C4N NDP 400 C 1 HETATM 43 C C5N NDP . . . G 5 -23.208 -37.051 16.551 1 56.25 ? C5N NDP 400 C 1 HETATM 44 C C6N NDP . . . G 5 -24.006 -37.313 15.519 1 55.8 ? C6N NDP 400 C 1 HETATM 45 P P2B NDP . . . G 5 -21.208 -37.796 0.707 1 63.95 ? P2B NDP 400 C 1 HETATM 46 O O1X NDP . . . G 5 -21.978 -38.648 -0.276 1 65.89 ? O1X NDP 400 C 1 HETATM 47 O O2X NDP . . . G 5 -20.727 -36.474 0.156 1 62.57 ? O2X NDP 400 C 1 HETATM 48 O O3X NDP . . . G 5 -20.188 -38.556 1.525 1 64.59 ? O3X NDP 400 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #