data_1U2D # _model_server_result.job_id -PIGpX-DgmBsdPgXnThJLg _model_server_result.datetime_utc '2024-10-18 20:21:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u2d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 1U2D # _exptl.entry_id 1U2D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1U2D _cell.length_a 72.249 _cell.length_b 74.546 _cell.length_c 204.163 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U2D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1U2D _atom_sites.fract_transf_matrix[1][1] 0.013841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013414 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAD A 1 500 500 NAD NAD . E 3 NAD B 1 600 600 NAD NAD . F 4 GOL B 1 404 4 GOL GOL . G 5 NDP C 1 400 400 NDP NDP . H 6 HOH A 1 501 1 HOH HOH . H 6 HOH A 2 502 3 HOH HOH . H 6 HOH A 3 503 5 HOH HOH . H 6 HOH A 4 504 8 HOH HOH . H 6 HOH A 5 505 9 HOH HOH . H 6 HOH A 6 506 14 HOH HOH . H 6 HOH A 7 507 17 HOH HOH . H 6 HOH A 8 508 24 HOH HOH . H 6 HOH A 9 509 26 HOH HOH . H 6 HOH A 10 510 29 HOH HOH . H 6 HOH A 11 511 32 HOH HOH . H 6 HOH A 12 512 34 HOH HOH . H 6 HOH A 13 513 38 HOH HOH . H 6 HOH A 14 514 49 HOH HOH . H 6 HOH A 15 515 40 HOH HOH . I 6 HOH B 1 601 2 HOH HOH . I 6 HOH B 2 602 4 HOH HOH . I 6 HOH B 3 603 10 HOH HOH . I 6 HOH B 4 604 12 HOH HOH . I 6 HOH B 5 605 13 HOH HOH . I 6 HOH B 6 606 15 HOH HOH . I 6 HOH B 7 607 16 HOH HOH . I 6 HOH B 8 608 18 HOH HOH . I 6 HOH B 9 609 20 HOH HOH . I 6 HOH B 10 610 21 HOH HOH . I 6 HOH B 11 611 23 HOH HOH . I 6 HOH B 12 612 27 HOH HOH . I 6 HOH B 13 613 28 HOH HOH . I 6 HOH B 14 614 31 HOH HOH . I 6 HOH B 15 615 33 HOH HOH . I 6 HOH B 16 616 35 HOH HOH . I 6 HOH B 17 617 37 HOH HOH . I 6 HOH B 18 618 41 HOH HOH . J 6 HOH C 1 401 6 HOH HOH . J 6 HOH C 2 402 7 HOH HOH . J 6 HOH C 3 403 11 HOH HOH . J 6 HOH C 4 404 19 HOH HOH . J 6 HOH C 5 405 22 HOH HOH . J 6 HOH C 6 406 25 HOH HOH . J 6 HOH C 7 407 30 HOH HOH . J 6 HOH C 8 408 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 -21.27 -33.853 36.347 1 99.29 ? C1 GOL 404 B 1 HETATM 2 O O1 GOL . . . F 4 -20.503 -33.438 37.457 1 99.06 ? O1 GOL 404 B 1 HETATM 3 C C2 GOL . . . F 4 -22.634 -34.358 36.816 1 99.25 ? C2 GOL 404 B 1 HETATM 4 O O2 GOL . . . F 4 -22.451 -35.425 37.72 1 99.06 ? O2 GOL 404 B 1 HETATM 5 C C3 GOL . . . F 4 -23.518 -34.847 35.664 1 99.12 ? C3 GOL 404 B 1 HETATM 6 O O3 GOL . . . F 4 -23.765 -33.886 34.654 1 98.83 ? O3 GOL 404 B 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #