data_1U2D # _model_server_result.job_id jtL0VG_0hDzEERdl8PVlhA _model_server_result.datetime_utc '2024-10-18 20:28:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u2d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 1U2D # _exptl.entry_id 1U2D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1U2D _cell.length_a 72.249 _cell.length_b 74.546 _cell.length_c 204.163 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U2D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 250 n n PA O2A NAD sing 251 n n PA O5B NAD sing 252 n n PA O3 NAD sing 253 n n O2A HOA2 NAD sing 254 n n O5B C5B NAD sing 255 n n C5B C4B NAD sing 256 n n C5B H51A NAD sing 257 n n C5B H52A NAD sing 258 n n C4B O4B NAD sing 259 n n C4B C3B NAD sing 260 n n C4B H4B NAD sing 261 n n O4B C1B NAD sing 262 n n C3B O3B NAD sing 263 n n C3B C2B NAD sing 264 n n C3B H3B NAD sing 265 n n O3B HO3A NAD sing 266 n n C2B O2B NAD sing 267 n n C2B C1B NAD sing 268 n n C2B H2B NAD sing 269 n n O2B HO2A NAD sing 270 n n C1B N9A NAD sing 271 n n C1B H1B NAD sing 272 n n N9A C8A NAD sing 273 n y N9A C4A NAD sing 274 n y C8A N7A NAD doub 275 n y C8A H8A NAD sing 276 n n N7A C5A NAD sing 277 n y C5A C6A NAD sing 278 n y C5A C4A NAD doub 279 n y C6A N6A NAD sing 280 n n C6A N1A NAD doub 281 n y N6A H61A NAD sing 282 n n N6A H62A NAD sing 283 n n N1A C2A NAD sing 284 n y C2A N3A NAD doub 285 n y C2A H2A NAD sing 286 n n N3A C4A NAD sing 287 n y O3 PN NAD sing 288 n n PN O1N NAD doub 289 n n PN O2N NAD sing 290 n n PN O5D NAD sing 291 n n O5D C5D NAD sing 292 n n C5D C4D NAD sing 293 n n C5D H51N NAD sing 294 n n C5D H52N NAD sing 295 n n C4D O4D NAD sing 296 n n C4D C3D NAD sing 297 n n C4D H4D NAD sing 298 n n O4D C1D NAD sing 299 n n C3D O3D NAD sing 300 n n C3D C2D NAD sing 301 n n C3D H3D NAD sing 302 n n O3D HO3N NAD sing 303 n n C2D O2D NAD sing 304 n n C2D C1D NAD sing 305 n n C2D H2D NAD sing 306 n n O2D HO2N NAD sing 307 n n C1D N1N NAD sing 308 n n C1D H1D NAD sing 309 n n N1N C2N NAD sing 310 n y N1N C6N NAD doub 311 n y C2N C3N NAD doub 312 n y C2N H2N NAD sing 313 n n C3N C7N NAD sing 314 n n C3N C4N NAD sing 315 n y C7N O7N NAD doub 316 n n C7N N7N NAD sing 317 n n N7N H71N NAD sing 318 n n N7N H72N NAD sing 319 n n C4N C5N NAD doub 320 n y C4N H4N NAD sing 321 n n C5N C6N NAD sing 322 n y C5N H5N NAD sing 323 n n C6N H6N NAD sing 324 n n # _atom_sites.entry_id 1U2D _atom_sites.fract_transf_matrix[1][1] 0.013841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013414 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAD A 1 500 500 NAD NAD . E 3 NAD B 1 600 600 NAD NAD . F 4 GOL B 1 404 4 GOL GOL . G 5 NDP C 1 400 400 NDP NDP . H 6 HOH A 1 501 1 HOH HOH . H 6 HOH A 2 502 3 HOH HOH . H 6 HOH A 3 503 5 HOH HOH . H 6 HOH A 4 504 8 HOH HOH . H 6 HOH A 5 505 9 HOH HOH . H 6 HOH A 6 506 14 HOH HOH . H 6 HOH A 7 507 17 HOH HOH . H 6 HOH A 8 508 24 HOH HOH . H 6 HOH A 9 509 26 HOH HOH . H 6 HOH A 10 510 29 HOH HOH . H 6 HOH A 11 511 32 HOH HOH . H 6 HOH A 12 512 34 HOH HOH . H 6 HOH A 13 513 38 HOH HOH . H 6 HOH A 14 514 49 HOH HOH . H 6 HOH A 15 515 40 HOH HOH . I 6 HOH B 1 601 2 HOH HOH . I 6 HOH B 2 602 4 HOH HOH . I 6 HOH B 3 603 10 HOH HOH . I 6 HOH B 4 604 12 HOH HOH . I 6 HOH B 5 605 13 HOH HOH . I 6 HOH B 6 606 15 HOH HOH . I 6 HOH B 7 607 16 HOH HOH . I 6 HOH B 8 608 18 HOH HOH . I 6 HOH B 9 609 20 HOH HOH . I 6 HOH B 10 610 21 HOH HOH . I 6 HOH B 11 611 23 HOH HOH . I 6 HOH B 12 612 27 HOH HOH . I 6 HOH B 13 613 28 HOH HOH . I 6 HOH B 14 614 31 HOH HOH . I 6 HOH B 15 615 33 HOH HOH . I 6 HOH B 16 616 35 HOH HOH . I 6 HOH B 17 617 37 HOH HOH . I 6 HOH B 18 618 41 HOH HOH . J 6 HOH C 1 401 6 HOH HOH . J 6 HOH C 2 402 7 HOH HOH . J 6 HOH C 3 403 11 HOH HOH . J 6 HOH C 4 404 19 HOH HOH . J 6 HOH C 5 405 22 HOH HOH . J 6 HOH C 6 406 25 HOH HOH . J 6 HOH C 7 407 30 HOH HOH . J 6 HOH C 8 408 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . D 3 -7.218 6.365 26.377 1 58.24 ? PA NAD 500 A 1 HETATM 2 O O1A NAD . . . D 3 -6.566 5.178 27.048 1 56.63 ? O1A NAD 500 A 1 HETATM 3 O O2A NAD . . . D 3 -6.696 7.759 26.649 1 59.29 ? O2A NAD 500 A 1 HETATM 4 O O5B NAD . . . D 3 -8.798 6.344 26.694 1 58.85 ? O5B NAD 500 A 1 HETATM 5 C C5B NAD . . . D 3 -9.592 5.248 26.242 1 58.64 ? C5B NAD 500 A 1 HETATM 6 C C4B NAD . . . D 3 -10.837 5.699 25.483 1 59.62 ? C4B NAD 500 A 1 HETATM 7 O O4B NAD . . . D 3 -11.81 6.225 26.386 1 60.59 ? O4B NAD 500 A 1 HETATM 8 C C3B NAD . . . D 3 -10.615 6.785 24.434 1 60.78 ? C3B NAD 500 A 1 HETATM 9 O O3B NAD . . . D 3 -10.876 6.272 23.138 1 60.57 ? O3B NAD 500 A 1 HETATM 10 C C2B NAD . . . D 3 -11.62 7.871 24.767 1 62.14 ? C2B NAD 500 A 1 HETATM 11 O O2B NAD . . . D 3 -12.211 8.411 23.596 1 63.08 ? O2B NAD 500 A 1 HETATM 12 C C1B NAD . . . D 3 -12.621 7.146 25.657 1 61.67 ? C1B NAD 500 A 1 HETATM 13 N N9A NAD . . . D 3 -13.391 8.031 26.573 1 62.61 ? N9A NAD 500 A 1 HETATM 14 C C8A NAD . . . D 3 -12.909 8.939 27.463 1 63.29 ? C8A NAD 500 A 1 HETATM 15 N N7A NAD . . . D 3 -13.914 9.57 28.162 1 64.36 ? N7A NAD 500 A 1 HETATM 16 C C5A NAD . . . D 3 -15.076 9.055 27.72 1 64.37 ? C5A NAD 500 A 1 HETATM 17 C C6A NAD . . . D 3 -16.54 9.192 27.949 1 65.05 ? C6A NAD 500 A 1 HETATM 18 N N6A NAD . . . D 3 -17.014 10.069 28.863 1 66.18 ? N6A NAD 500 A 1 HETATM 19 N N1A NAD . . . D 3 -17.397 8.425 27.23 1 64.74 ? N1A NAD 500 A 1 HETATM 20 C C2A NAD . . . D 3 -17.004 7.528 26.301 1 63.67 ? C2A NAD 500 A 1 HETATM 21 N N3A NAD . . . D 3 -15.709 7.315 26.007 1 62.72 ? N3A NAD 500 A 1 HETATM 22 C C4A NAD . . . D 3 -14.707 8.077 26.711 1 63.07 ? C4A NAD 500 A 1 HETATM 23 O O3 NAD . . . D 3 -7.277 6.126 24.786 1 57.67 ? O3 NAD 500 A 1 HETATM 24 P PN NAD . . . D 3 -6.066 5.494 23.942 1 57.03 ? PN NAD 500 A 1 HETATM 25 O O1N NAD . . . D 3 -6.004 4.006 24.198 1 55.55 ? O1N NAD 500 A 1 HETATM 26 O O2N NAD . . . D 3 -4.844 6.359 24.136 1 57.51 ? O2N NAD 500 A 1 HETATM 27 O O5D NAD . . . D 3 -6.597 5.72 22.44 1 57.91 ? O5D NAD 500 A 1 HETATM 28 C C5D NAD . . . D 3 -7.178 6.959 22.03 1 58.87 ? C5D NAD 500 A 1 HETATM 29 C C4D NAD . . . D 3 -6.723 7.293 20.617 1 59.68 ? C4D NAD 500 A 1 HETATM 30 O O4D NAD . . . D 3 -5.346 7.684 20.638 1 60.05 ? O4D NAD 500 A 1 HETATM 31 C C3D NAD . . . D 3 -6.831 6.103 19.672 1 59.14 ? C3D NAD 500 A 1 HETATM 32 O O3D NAD . . . D 3 -7.416 6.52 18.449 1 60.36 ? O3D NAD 500 A 1 HETATM 33 C C2D NAD . . . D 3 -5.404 5.638 19.462 1 58.78 ? C2D NAD 500 A 1 HETATM 34 O O2D NAD . . . D 3 -5.209 5.093 18.167 1 58.77 ? O2D NAD 500 A 1 HETATM 35 C C1D NAD . . . D 3 -4.59 6.912 19.695 1 59.95 ? C1D NAD 500 A 1 HETATM 36 N N1N NAD . . . D 3 -3.234 6.615 20.193 1 59.88 ? N1N NAD 500 A 1 HETATM 37 C C2N NAD . . . D 3 -2.243 7.048 19.486 1 60.62 ? C2N NAD 500 A 1 HETATM 38 C C3N NAD . . . D 3 -0.941 6.871 19.817 1 60.55 ? C3N NAD 500 A 1 HETATM 39 C C7N NAD . . . D 3 0.142 7.394 18.961 1 61.83 ? C7N NAD 500 A 1 HETATM 40 O O7N NAD . . . D 3 -0.148 7.905 17.891 1 63.38 ? O7N NAD 500 A 1 HETATM 41 N N7N NAD . . . D 3 1.43 7.321 19.312 1 61.73 ? N7N NAD 500 A 1 HETATM 42 C C4N NAD . . . D 3 -0.737 6.111 21.098 1 59.15 ? C4N NAD 500 A 1 HETATM 43 C C5N NAD . . . D 3 -1.941 5.655 21.847 1 58.55 ? C5N NAD 500 A 1 HETATM 44 C C6N NAD . . . D 3 -3.118 5.964 21.299 1 58.98 ? C6N NAD 500 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #