data_1U2G # _model_server_result.job_id fsYrnlZf6aAgoDY3rFRhDw _model_server_result.datetime_utc '2024-11-13 07:24:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u2g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 1U2G # _exptl.entry_id 1U2G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 559.316 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE-5-DIPHOSPHORIBOSE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1U2G _cell.length_a 72.356 _cell.length_b 73.766 _cell.length_c 205.026 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U2G _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C15 H23 N5 O14 P2' _chem_comp.formula_weight 559.316 _chem_comp.id APR _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE-5-DIPHOSPHORIBOSE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 APR sing 13 n y N1 C6 APR doub 14 n y C2 N3 APR doub 15 n y C2 H2 APR sing 16 n n N3 C4 APR sing 17 n y C4 C5 APR doub 18 n y C4 N9 APR sing 19 n y C5 C6 APR sing 20 n y C5 N7 APR sing 21 n y C6 N6 APR sing 22 n n N6 H61 APR sing 23 n n N6 H62 APR sing 24 n n N7 C8 APR doub 25 n y C8 N9 APR sing 26 n y C8 H8 APR sing 27 n n N9 C1' APR sing 28 n n C1' C2' APR sing 29 n n C1' O4' APR sing 30 n n C1' "H'1" APR sing 31 n n C2' O2' APR sing 32 n n C2' C3' APR sing 33 n n C2' "H'2" APR sing 34 n n O2' "HO'2" APR sing 35 n n C3' O3' APR sing 36 n n C3' C4' APR sing 37 n n C3' "H'3" APR sing 38 n n O3' "HO'3" APR sing 39 n n O4' C4' APR sing 40 n n C4' C5' APR sing 41 n n C4' "H'4" APR sing 42 n n C5' O5' APR sing 43 n n C5' "H5'1" APR sing 44 n n C5' "H5'2" APR sing 45 n n O5' PA APR sing 46 n n PA O1A APR doub 47 n n PA O2A APR sing 48 n n PA O3A APR sing 49 n n O2A HOA2 APR sing 50 n n O3A PB APR sing 51 n n PB O1B APR doub 52 n n PB O2B APR sing 53 n n PB O5D APR sing 54 n n O2B HOB2 APR sing 55 n n O5D C5D APR sing 56 n n C5D C4D APR sing 57 n n C5D H5R1 APR sing 58 n n C5D H5R2 APR sing 59 n n O4D C1D APR sing 60 n n O4D C4D APR sing 61 n n O1D C1D APR sing 62 n n O1D HOR1 APR sing 63 n n C1D C2D APR sing 64 n n C1D "HR'1" APR sing 65 n n O2D C2D APR sing 66 n n O2D HOR2 APR sing 67 n n C2D C3D APR sing 68 n n C2D "HR'2" APR sing 69 n n O3D C3D APR sing 70 n n O3D HOR3 APR sing 71 n n C3D C4D APR sing 72 n n C3D "HR'3" APR sing 73 n n C4D "HR'4" APR sing 74 n n # _atom_sites.entry_id 1U2G _atom_sites.fract_transf_matrix[1][1] 0.013821 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013556 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 APR A 1 500 500 APR APR . E 3 APR B 1 600 600 APR APR . F 4 GOL B 1 401 1 GOL GOL . G 5 NDP C 1 400 400 NDP NDP . H 6 HOH A 1 501 5 HOH HOH . H 6 HOH A 2 502 9 HOH HOH . H 6 HOH A 3 503 11 HOH HOH . H 6 HOH A 4 504 12 HOH HOH . H 6 HOH A 5 505 16 HOH HOH . H 6 HOH A 6 506 19 HOH HOH . H 6 HOH A 7 507 25 HOH HOH . H 6 HOH A 8 508 27 HOH HOH . H 6 HOH A 9 509 31 HOH HOH . H 6 HOH A 10 510 36 HOH HOH . H 6 HOH A 11 511 43 HOH HOH . H 6 HOH A 12 512 44 HOH HOH . H 6 HOH A 13 513 47 HOH HOH . H 6 HOH A 14 514 50 HOH HOH . H 6 HOH A 15 515 52 HOH HOH . H 6 HOH A 16 516 57 HOH HOH . H 6 HOH A 17 517 58 HOH HOH . H 6 HOH A 18 518 60 HOH HOH . H 6 HOH A 19 519 63 HOH HOH . H 6 HOH A 20 520 64 HOH HOH . H 6 HOH A 21 521 68 HOH HOH . H 6 HOH A 22 522 69 HOH HOH . H 6 HOH A 23 523 72 HOH HOH . H 6 HOH A 24 524 79 HOH HOH . H 6 HOH A 25 525 80 HOH HOH . H 6 HOH A 26 526 82 HOH HOH . H 6 HOH A 27 527 83 HOH HOH . H 6 HOH A 28 528 84 HOH HOH . H 6 HOH A 29 529 85 HOH HOH . H 6 HOH A 30 530 86 HOH HOH . H 6 HOH A 31 531 94 HOH HOH . H 6 HOH A 32 532 98 HOH HOH . H 6 HOH A 33 533 106 HOH HOH . H 6 HOH A 34 534 109 HOH HOH . H 6 HOH A 35 535 110 HOH HOH . H 6 HOH A 36 536 111 HOH HOH . H 6 HOH A 37 537 112 HOH HOH . H 6 HOH A 38 538 113 HOH HOH . H 6 HOH A 39 539 114 HOH HOH . H 6 HOH A 40 540 115 HOH HOH . H 6 HOH A 41 541 119 HOH HOH . H 6 HOH A 42 542 120 HOH HOH . H 6 HOH A 43 543 122 HOH HOH . H 6 HOH A 44 544 123 HOH HOH . H 6 HOH A 45 545 124 HOH HOH . H 6 HOH A 46 546 127 HOH HOH . H 6 HOH A 47 547 129 HOH HOH . H 6 HOH A 48 548 130 HOH HOH . H 6 HOH A 49 549 132 HOH HOH . H 6 HOH A 50 550 133 HOH HOH . H 6 HOH A 51 551 137 HOH HOH . H 6 HOH A 52 552 143 HOH HOH . H 6 HOH A 53 553 144 HOH HOH . H 6 HOH A 54 554 147 HOH HOH . H 6 HOH A 55 555 150 HOH HOH . H 6 HOH A 56 556 151 HOH HOH . H 6 HOH A 57 557 153 HOH HOH . H 6 HOH A 58 558 154 HOH HOH . H 6 HOH A 59 559 155 HOH HOH . H 6 HOH A 60 560 156 HOH HOH . H 6 HOH A 61 561 157 HOH HOH . H 6 HOH A 62 562 158 HOH HOH . H 6 HOH A 63 563 159 HOH HOH . H 6 HOH A 64 564 160 HOH HOH . H 6 HOH A 65 565 163 HOH HOH . H 6 HOH A 66 566 164 HOH HOH . H 6 HOH A 67 567 165 HOH HOH . H 6 HOH A 68 568 166 HOH HOH . H 6 HOH A 69 569 172 HOH HOH . H 6 HOH A 70 570 173 HOH HOH . H 6 HOH A 71 571 174 HOH HOH . I 6 HOH B 1 601 1 HOH HOH . I 6 HOH B 2 602 2 HOH HOH . I 6 HOH B 3 603 3 HOH HOH . I 6 HOH B 4 604 4 HOH HOH . I 6 HOH B 5 605 6 HOH HOH . I 6 HOH B 6 606 7 HOH HOH . I 6 HOH B 7 607 8 HOH HOH . I 6 HOH B 8 608 10 HOH HOH . I 6 HOH B 9 609 13 HOH HOH . I 6 HOH B 10 610 14 HOH HOH . I 6 HOH B 11 611 15 HOH HOH . I 6 HOH B 12 612 17 HOH HOH . I 6 HOH B 13 613 18 HOH HOH . I 6 HOH B 14 614 20 HOH HOH . I 6 HOH B 15 615 22 HOH HOH . I 6 HOH B 16 616 23 HOH HOH . I 6 HOH B 17 617 24 HOH HOH . I 6 HOH B 18 618 26 HOH HOH . I 6 HOH B 19 619 28 HOH HOH . I 6 HOH B 20 620 29 HOH HOH . I 6 HOH B 21 621 30 HOH HOH . I 6 HOH B 22 622 32 HOH HOH . I 6 HOH B 23 623 33 HOH HOH . I 6 HOH B 24 624 34 HOH HOH . I 6 HOH B 25 625 35 HOH HOH . I 6 HOH B 26 626 37 HOH HOH . I 6 HOH B 27 627 38 HOH HOH . I 6 HOH B 28 628 39 HOH HOH . I 6 HOH B 29 629 40 HOH HOH . I 6 HOH B 30 630 41 HOH HOH . I 6 HOH B 31 631 42 HOH HOH . I 6 HOH B 32 632 46 HOH HOH . I 6 HOH B 33 633 48 HOH HOH . I 6 HOH B 34 634 49 HOH HOH . I 6 HOH B 35 635 51 HOH HOH . I 6 HOH B 36 636 53 HOH HOH . I 6 HOH B 37 637 54 HOH HOH . I 6 HOH B 38 638 55 HOH HOH . I 6 HOH B 39 639 56 HOH HOH . I 6 HOH B 40 640 61 HOH HOH . I 6 HOH B 41 641 65 HOH HOH . I 6 HOH B 42 642 67 HOH HOH . I 6 HOH B 43 643 70 HOH HOH . I 6 HOH B 44 644 71 HOH HOH . I 6 HOH B 45 645 73 HOH HOH . I 6 HOH B 46 646 74 HOH HOH . I 6 HOH B 47 647 75 HOH HOH . I 6 HOH B 48 648 76 HOH HOH . I 6 HOH B 49 649 77 HOH HOH . I 6 HOH B 50 650 78 HOH HOH . I 6 HOH B 51 651 81 HOH HOH . I 6 HOH B 52 652 87 HOH HOH . I 6 HOH B 53 653 88 HOH HOH . I 6 HOH B 54 654 89 HOH HOH . I 6 HOH B 55 655 90 HOH HOH . I 6 HOH B 56 656 91 HOH HOH . I 6 HOH B 57 657 93 HOH HOH . I 6 HOH B 58 658 95 HOH HOH . I 6 HOH B 59 659 97 HOH HOH . I 6 HOH B 60 660 99 HOH HOH . I 6 HOH B 61 661 100 HOH HOH . I 6 HOH B 62 662 101 HOH HOH . I 6 HOH B 63 663 102 HOH HOH . I 6 HOH B 64 664 103 HOH HOH . I 6 HOH B 65 665 104 HOH HOH . I 6 HOH B 66 666 105 HOH HOH . I 6 HOH B 67 667 107 HOH HOH . I 6 HOH B 68 668 116 HOH HOH . I 6 HOH B 69 669 117 HOH HOH . I 6 HOH B 70 670 118 HOH HOH . I 6 HOH B 71 671 121 HOH HOH . I 6 HOH B 72 672 125 HOH HOH . I 6 HOH B 73 673 128 HOH HOH . I 6 HOH B 74 674 131 HOH HOH . I 6 HOH B 75 675 134 HOH HOH . I 6 HOH B 76 676 135 HOH HOH . I 6 HOH B 77 677 138 HOH HOH . I 6 HOH B 78 678 139 HOH HOH . I 6 HOH B 79 679 140 HOH HOH . I 6 HOH B 80 680 141 HOH HOH . I 6 HOH B 81 681 142 HOH HOH . I 6 HOH B 82 682 146 HOH HOH . I 6 HOH B 83 683 148 HOH HOH . I 6 HOH B 84 684 149 HOH HOH . I 6 HOH B 85 685 152 HOH HOH . I 6 HOH B 86 686 168 HOH HOH . I 6 HOH B 87 687 169 HOH HOH . J 6 HOH C 1 401 21 HOH HOH . J 6 HOH C 2 402 45 HOH HOH . J 6 HOH C 3 403 59 HOH HOH . J 6 HOH C 4 404 62 HOH HOH . J 6 HOH C 5 405 66 HOH HOH . J 6 HOH C 6 406 92 HOH HOH . J 6 HOH C 7 407 96 HOH HOH . J 6 HOH C 8 408 108 HOH HOH . J 6 HOH C 9 409 126 HOH HOH . J 6 HOH C 10 410 136 HOH HOH . J 6 HOH C 11 411 145 HOH HOH . J 6 HOH C 12 412 161 HOH HOH . J 6 HOH C 13 413 162 HOH HOH . J 6 HOH C 14 414 167 HOH HOH . J 6 HOH C 15 415 170 HOH HOH . J 6 HOH C 16 416 171 HOH HOH . J 6 HOH C 17 417 175 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 APR . . . D 3 -17.757 8.372 27.723 1 96.61 ? N1 APR 500 A 1 HETATM 2 C C2 APR . . . D 3 -17.303 7.541 26.761 1 95.08 ? C2 APR 500 A 1 HETATM 3 N N3 APR . . . D 3 -15.996 7.448 26.447 1 94.24 ? N3 APR 500 A 1 HETATM 4 C C4 APR . . . D 3 -15.092 8.203 27.113 1 94.87 ? C4 APR 500 A 1 HETATM 5 C C5 APR . . . D 3 -15.487 9.114 28.148 1 96.38 ? C5 APR 500 A 1 HETATM 6 C C6 APR . . . D 3 -16.936 9.176 28.441 1 97.29 ? C6 APR 500 A 1 HETATM 7 N N6 APR . . . D 3 -17.425 9.997 29.4 1 98.86 ? N6 APR 500 A 1 HETATM 8 N N7 APR . . . D 3 -14.348 9.731 28.639 1 96.64 ? N7 APR 500 A 1 HETATM 9 C C8 APR . . . D 3 -13.324 9.173 27.888 1 95.35 ? C8 APR 500 A 1 HETATM 10 N N9 APR . . . D 3 -13.78 8.266 26.971 1 94.3 ? N9 APR 500 A 1 HETATM 11 C C1' APR . . . D 3 -13.115 7.391 25.972 1 92.84 ? C1' APR 500 A 1 HETATM 12 C C2' APR . . . D 3 -12.166 8.155 25.044 1 93.61 ? C2' APR 500 A 1 HETATM 13 O O2' APR . . . D 3 -12.811 8.634 23.879 1 94.57 ? O2' APR 500 A 1 HETATM 14 C C3' APR . . . D 3 -11.048 7.179 24.716 1 91.87 ? C3' APR 500 A 1 HETATM 15 O O3' APR . . . D 3 -11.261 6.519 23.481 1 90.82 ? O3' APR 500 A 1 HETATM 16 O O4' APR . . . D 3 -12.305 6.452 26.677 1 90.97 ? O4' APR 500 A 1 HETATM 17 C C4' APR . . . D 3 -11.176 6.186 25.852 1 90.38 ? C4' APR 500 A 1 HETATM 18 C C5' APR . . . D 3 -10.127 5.107 26.237 1 88.81 ? C5' APR 500 A 1 HETATM 19 O O5' APR . . . D 3 -9.171 5.693 27.139 1 89.37 ? O5' APR 500 A 1 HETATM 20 P PA APR . . . D 3 -7.756 6.341 26.687 1 89.9 ? PA APR 500 A 1 HETATM 21 O O1A APR . . . D 3 -7.616 7.828 27.236 1 91.83 ? O1A APR 500 A 1 HETATM 22 O O2A APR . . . D 3 -6.566 5.436 27.234 1 88.67 ? O2A APR 500 A 1 HETATM 23 O O3A APR . . . D 3 -7.768 6.365 25.076 1 91.36 ? O3A APR 500 A 1 HETATM 24 P PB APR . . . D 3 -6.533 5.789 24.218 1 91.49 ? PB APR 500 A 1 HETATM 25 O O1B APR . . . D 3 -6.424 4.216 24.398 1 89.72 ? O1B APR 500 A 1 HETATM 26 O O2B APR . . . D 3 -5.168 6.492 24.628 1 92.5 ? O2B APR 500 A 1 HETATM 27 O O5D APR . . . D 3 -6.923 6.155 22.701 1 94.09 ? O5D APR 500 A 1 HETATM 28 C C5D APR . . . D 3 -6.793 7.489 22.207 1 97.49 ? C5D APR 500 A 1 HETATM 29 O O4D APR . . . D 3 -5.894 6.179 20.359 1 98.07 ? O4D APR 500 A 1 HETATM 30 O O1D APR . . . D 3 -7.169 4.438 19.457 1 96.7 ? O1D APR 500 A 1 HETATM 31 C C1D APR . . . D 3 -6.556 5.691 19.187 1 98.46 ? C1D APR 500 A 1 HETATM 32 O O2D APR . . . D 3 -7.401 7.163 17.451 1 101.76 ? O2D APR 500 A 1 HETATM 33 C C2D APR . . . D 3 -7.607 6.717 18.786 1 100.19 ? C2D APR 500 A 1 HETATM 34 O O3D APR . . . D 3 -7.204 9.087 19.127 1 102.94 ? O3D APR 500 A 1 HETATM 35 C C3D APR . . . D 3 -7.488 7.858 19.782 1 100.81 ? C3D APR 500 A 1 HETATM 36 C C4D APR . . . D 3 -6.361 7.48 20.739 1 99.09 ? C4D APR 500 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 36 #