data_1U2Y # _model_server_result.job_id 34zMEqo2wb9hSalMq_FLBQ _model_server_result.datetime_utc '2024-11-07 15:37:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u2y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":499}' # _entry.id 1U2Y # _exptl.entry_id 1U2Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.17 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,3S,4R,5R)-6-(HYDROXYAMINO)-2-(HYDROXYMETHYL)-2,3,4,5-TETRAHYDROPYRIDINE-3,4,5-TRIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1U2Y _cell.length_a 52.8 _cell.length_b 68.9 _cell.length_c 132.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U2Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 A SG CYS 86 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 70 A CYS 70 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 141 A CYS 141 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 378 A CYS 378 1_555 A SG CYS 384 A CYS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 450 A CYS 450 1_555 A SG CYS 462 A CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A C PCA 1 A PCA 1 1_555 A N TYR 2 A TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? covale ? covale2 A ND2 ASN 461 A ASN 461 1_555 B C1 NAG . A NAG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? metalc ? metalc1 A OD1 ASN 100 A ASN 100 1_555 C CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc2 A O ARG 158 A ARG 158 1_555 C CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc3 A OD1 ASP 167 A ASP 167 1_555 C CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc4 A OD2 ASP 167 A ASP 167 1_555 C CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc5 A O HIS 201 A HIS 201 1_555 C CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc6 C CA CA . A CA 497 1_555 F O HOH . A HOH 574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? # _chem_comp.formula 'C6 H12 N2 O5' _chem_comp.formula_weight 192.17 _chem_comp.id GOX _chem_comp.mon_nstd_flag . _chem_comp.name (2S,3S,4R,5R)-6-(HYDROXYAMINO)-2-(HYDROXYMETHYL)-2,3,4,5-TETRAHYDROPYRIDINE-3,4,5-TRIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms D-GLUCONHYDROXIMO-1,5-LACTAM # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 GOX doub 129 z n C1 C2 GOX sing 130 n n C1 N5 GOX sing 131 n n N1 O7 GOX sing 132 n n C2 O2 GOX sing 133 n n C2 C3 GOX sing 134 n n C2 HC2 GOX sing 135 n n N5 C5 GOX sing 136 n n N5 HN5 GOX sing 137 n n O7 HO7 GOX sing 138 n n O2 HO2 GOX sing 139 n n C3 O3 GOX sing 140 n n C3 C4 GOX sing 141 n n C3 HC3 GOX sing 142 n n O3 HO3 GOX sing 143 n n C4 O4 GOX sing 144 n n C4 C5 GOX sing 145 n n C4 HC4 GOX sing 146 n n O4 HO4 GOX sing 147 n n C5 C6 GOX sing 148 n n C5 HC5 GOX sing 149 n n C6 O6 GOX sing 150 n n C6 HC61 GOX sing 151 n n C6 HC62 GOX sing 152 n n O6 HO6 GOX sing 153 n n # _atom_sites.entry_id 1U2Y _atom_sites.fract_transf_matrix[1][1] 0.018939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014514 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007553 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 500 500 NAG NAG . C 3 CA A 1 497 497 CA CA . D 4 CL A 1 498 498 CL CL . E 5 GOX A 1 499 499 GOX GOX . F 6 HOH A 1 501 501 HOH HOH . F 6 HOH A 2 502 502 HOH HOH . F 6 HOH A 3 503 503 HOH HOH . F 6 HOH A 4 504 504 HOH HOH . F 6 HOH A 5 505 505 HOH HOH . F 6 HOH A 6 506 506 HOH HOH . F 6 HOH A 7 507 507 HOH HOH . F 6 HOH A 8 508 508 HOH HOH . F 6 HOH A 9 509 509 HOH HOH . F 6 HOH A 10 510 510 HOH HOH . F 6 HOH A 11 511 511 HOH HOH . F 6 HOH A 12 512 512 HOH HOH . F 6 HOH A 13 513 513 HOH HOH . F 6 HOH A 14 514 514 HOH HOH . F 6 HOH A 15 515 515 HOH HOH . F 6 HOH A 16 516 516 HOH HOH . F 6 HOH A 17 517 517 HOH HOH . F 6 HOH A 18 518 518 HOH HOH . F 6 HOH A 19 519 519 HOH HOH . F 6 HOH A 20 520 520 HOH HOH . F 6 HOH A 21 521 521 HOH HOH . F 6 HOH A 22 522 522 HOH HOH . F 6 HOH A 23 523 523 HOH HOH . F 6 HOH A 24 524 524 HOH HOH . F 6 HOH A 25 525 525 HOH HOH . F 6 HOH A 26 526 526 HOH HOH . F 6 HOH A 27 527 527 HOH HOH . F 6 HOH A 28 528 528 HOH HOH . F 6 HOH A 29 529 529 HOH HOH . F 6 HOH A 30 530 530 HOH HOH . F 6 HOH A 31 531 531 HOH HOH . F 6 HOH A 32 532 532 HOH HOH . F 6 HOH A 33 533 533 HOH HOH . F 6 HOH A 34 534 534 HOH HOH . F 6 HOH A 35 535 535 HOH HOH . F 6 HOH A 36 536 536 HOH HOH . F 6 HOH A 37 537 537 HOH HOH . F 6 HOH A 38 538 538 HOH HOH . F 6 HOH A 39 539 539 HOH HOH . F 6 HOH A 40 540 540 HOH HOH . F 6 HOH A 41 541 541 HOH HOH . F 6 HOH A 42 542 542 HOH HOH . F 6 HOH A 43 543 543 HOH HOH . F 6 HOH A 44 544 544 HOH HOH . F 6 HOH A 45 545 545 HOH HOH . F 6 HOH A 46 546 546 HOH HOH . F 6 HOH A 47 547 547 HOH HOH . F 6 HOH A 48 548 548 HOH HOH . F 6 HOH A 49 549 549 HOH HOH . F 6 HOH A 50 550 550 HOH HOH . F 6 HOH A 51 551 551 HOH HOH . F 6 HOH A 52 552 552 HOH HOH . F 6 HOH A 53 553 553 HOH HOH . F 6 HOH A 54 554 554 HOH HOH . F 6 HOH A 55 555 555 HOH HOH . F 6 HOH A 56 556 556 HOH HOH . F 6 HOH A 57 557 557 HOH HOH . F 6 HOH A 58 558 558 HOH HOH . F 6 HOH A 59 559 559 HOH HOH . F 6 HOH A 60 560 560 HOH HOH . F 6 HOH A 61 561 561 HOH HOH . F 6 HOH A 62 562 562 HOH HOH . F 6 HOH A 63 563 563 HOH HOH . F 6 HOH A 64 564 564 HOH HOH . F 6 HOH A 65 565 565 HOH HOH . F 6 HOH A 66 566 566 HOH HOH . F 6 HOH A 67 567 567 HOH HOH . F 6 HOH A 68 568 568 HOH HOH . F 6 HOH A 69 569 569 HOH HOH . F 6 HOH A 70 570 570 HOH HOH . F 6 HOH A 71 571 571 HOH HOH . F 6 HOH A 72 572 572 HOH HOH . F 6 HOH A 73 573 573 HOH HOH . F 6 HOH A 74 574 574 HOH HOH . F 6 HOH A 75 575 575 HOH HOH . F 6 HOH A 76 576 576 HOH HOH . F 6 HOH A 77 577 577 HOH HOH . F 6 HOH A 78 578 578 HOH HOH . F 6 HOH A 79 579 579 HOH HOH . F 6 HOH A 80 580 580 HOH HOH . F 6 HOH A 81 581 581 HOH HOH . F 6 HOH A 82 582 582 HOH HOH . F 6 HOH A 83 583 583 HOH HOH . F 6 HOH A 84 584 584 HOH HOH . F 6 HOH A 85 585 585 HOH HOH . F 6 HOH A 86 586 586 HOH HOH . F 6 HOH A 87 587 587 HOH HOH . F 6 HOH A 88 588 588 HOH HOH . F 6 HOH A 89 589 589 HOH HOH . F 6 HOH A 90 590 590 HOH HOH . F 6 HOH A 91 591 591 HOH HOH . F 6 HOH A 92 592 592 HOH HOH . F 6 HOH A 93 593 593 HOH HOH . F 6 HOH A 94 594 594 HOH HOH . F 6 HOH A 95 595 595 HOH HOH . F 6 HOH A 96 596 596 HOH HOH . F 6 HOH A 97 597 597 HOH HOH . F 6 HOH A 98 598 598 HOH HOH . F 6 HOH A 99 599 599 HOH HOH . F 6 HOH A 100 600 600 HOH HOH . F 6 HOH A 101 601 601 HOH HOH . F 6 HOH A 102 602 602 HOH HOH . F 6 HOH A 103 603 603 HOH HOH . F 6 HOH A 104 604 604 HOH HOH . F 6 HOH A 105 605 605 HOH HOH . F 6 HOH A 106 606 606 HOH HOH . F 6 HOH A 107 607 607 HOH HOH . F 6 HOH A 108 608 608 HOH HOH . F 6 HOH A 109 609 609 HOH HOH . F 6 HOH A 110 610 610 HOH HOH . F 6 HOH A 111 611 611 HOH HOH . F 6 HOH A 112 612 612 HOH HOH . F 6 HOH A 113 613 613 HOH HOH . F 6 HOH A 114 614 614 HOH HOH . F 6 HOH A 115 615 615 HOH HOH . F 6 HOH A 116 616 616 HOH HOH . F 6 HOH A 117 617 617 HOH HOH . F 6 HOH A 118 618 618 HOH HOH . F 6 HOH A 119 619 619 HOH HOH . F 6 HOH A 120 620 620 HOH HOH . F 6 HOH A 121 621 621 HOH HOH . F 6 HOH A 122 622 622 HOH HOH . F 6 HOH A 123 623 623 HOH HOH . F 6 HOH A 124 624 624 HOH HOH . F 6 HOH A 125 625 625 HOH HOH . F 6 HOH A 126 626 626 HOH HOH . F 6 HOH A 127 628 628 HOH HOH . F 6 HOH A 128 629 629 HOH HOH . F 6 HOH A 129 630 630 HOH HOH . F 6 HOH A 130 631 631 HOH HOH . F 6 HOH A 131 632 632 HOH HOH . F 6 HOH A 132 633 633 HOH HOH . F 6 HOH A 133 634 634 HOH HOH . F 6 HOH A 134 635 635 HOH HOH . F 6 HOH A 135 636 636 HOH HOH . F 6 HOH A 136 637 637 HOH HOH . F 6 HOH A 137 638 638 HOH HOH . F 6 HOH A 138 639 639 HOH HOH . F 6 HOH A 139 640 640 HOH HOH . F 6 HOH A 140 641 641 HOH HOH . F 6 HOH A 141 642 642 HOH HOH . F 6 HOH A 142 643 643 HOH HOH . F 6 HOH A 143 644 644 HOH HOH . F 6 HOH A 144 645 645 HOH HOH . F 6 HOH A 145 646 646 HOH HOH . F 6 HOH A 146 647 647 HOH HOH . F 6 HOH A 147 648 648 HOH HOH . F 6 HOH A 148 649 649 HOH HOH . F 6 HOH A 149 650 650 HOH HOH . F 6 HOH A 150 651 651 HOH HOH . F 6 HOH A 151 652 652 HOH HOH . F 6 HOH A 152 653 653 HOH HOH . F 6 HOH A 153 654 654 HOH HOH . F 6 HOH A 154 655 655 HOH HOH . F 6 HOH A 155 656 656 HOH HOH . F 6 HOH A 156 657 657 HOH HOH . F 6 HOH A 157 658 658 HOH HOH . F 6 HOH A 158 659 659 HOH HOH . F 6 HOH A 159 660 660 HOH HOH . F 6 HOH A 160 661 661 HOH HOH . F 6 HOH A 161 662 662 HOH HOH . F 6 HOH A 162 663 663 HOH HOH . F 6 HOH A 163 664 664 HOH HOH . F 6 HOH A 164 665 665 HOH HOH . F 6 HOH A 165 666 666 HOH HOH . F 6 HOH A 166 667 667 HOH HOH . F 6 HOH A 167 668 668 HOH HOH . F 6 HOH A 168 669 669 HOH HOH . F 6 HOH A 169 670 670 HOH HOH . F 6 HOH A 170 671 671 HOH HOH . F 6 HOH A 171 672 672 HOH HOH . F 6 HOH A 172 673 673 HOH HOH . F 6 HOH A 173 674 674 HOH HOH . F 6 HOH A 174 675 675 HOH HOH . F 6 HOH A 175 676 676 HOH HOH . F 6 HOH A 176 677 677 HOH HOH . F 6 HOH A 177 678 678 HOH HOH . F 6 HOH A 178 679 679 HOH HOH . F 6 HOH A 179 680 680 HOH HOH . F 6 HOH A 180 681 681 HOH HOH . F 6 HOH A 181 682 682 HOH HOH . F 6 HOH A 182 683 683 HOH HOH . F 6 HOH A 183 684 684 HOH HOH . F 6 HOH A 184 685 685 HOH HOH . F 6 HOH A 185 686 686 HOH HOH . F 6 HOH A 186 687 687 HOH HOH . F 6 HOH A 187 688 688 HOH HOH . F 6 HOH A 188 689 689 HOH HOH . F 6 HOH A 189 690 690 HOH HOH . F 6 HOH A 190 691 691 HOH HOH . F 6 HOH A 191 692 692 HOH HOH . F 6 HOH A 192 693 693 HOH HOH . F 6 HOH A 193 694 694 HOH HOH . F 6 HOH A 194 695 695 HOH HOH . F 6 HOH A 195 696 696 HOH HOH . F 6 HOH A 196 697 697 HOH HOH . F 6 HOH A 197 698 698 HOH HOH . F 6 HOH A 198 699 699 HOH HOH . F 6 HOH A 199 700 700 HOH HOH . F 6 HOH A 200 701 701 HOH HOH . F 6 HOH A 201 702 702 HOH HOH . F 6 HOH A 202 703 703 HOH HOH . F 6 HOH A 203 704 704 HOH HOH . F 6 HOH A 204 705 705 HOH HOH . F 6 HOH A 205 706 706 HOH HOH . F 6 HOH A 206 707 707 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOX . . . E 5 9.135 16.434 42.991 1 46.11 ? C1 GOX 499 A 1 HETATM 2 N N1 GOX . . . E 5 10.205 17.269 42.814 1 48.01 ? N1 GOX 499 A 1 HETATM 3 C C2 GOX . . . E 5 8.495 16.38 44.391 1 44.5 ? C2 GOX 499 A 1 HETATM 4 N N5 GOX . . . E 5 8.615 15.796 41.866 1 45.73 ? N5 GOX 499 A 1 HETATM 5 O O7 GOX . . . E 5 10.764 17.379 41.635 1 52.21 ? O7 GOX 499 A 1 HETATM 6 O O2 GOX . . . E 5 9.384 16.262 45.506 1 43.24 ? O2 GOX 499 A 1 HETATM 7 C C3 GOX . . . E 5 7.345 15.351 44.502 1 44.08 ? C3 GOX 499 A 1 HETATM 8 O O3 GOX . . . E 5 6.55 15.718 45.629 1 44.02 ? O3 GOX 499 A 1 HETATM 9 C C4 GOX . . . E 5 6.493 15.388 43.242 1 44.53 ? C4 GOX 499 A 1 HETATM 10 O O4 GOX . . . E 5 5.384 14.483 43.357 1 44.95 ? O4 GOX 499 A 1 HETATM 11 C C5 GOX . . . E 5 7.421 14.936 42.07 1 45.31 ? C5 GOX 499 A 1 HETATM 12 C C6 GOX . . . E 5 6.643 14.914 40.731 1 45.9 ? C6 GOX 499 A 1 HETATM 13 O O6 GOX . . . E 5 6.015 16.17 40.47 1 48.23 ? O6 GOX 499 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #