data_1U30 # _model_server_result.job_id kF_SOdk2306SmpqucTB7HQ _model_server_result.datetime_utc '2024-11-07 19:14:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u30 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":500}' # _entry.id 1U30 # _exptl.entry_id 1U30 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.17 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,3S,4R,5R)-6-(HYDROXYAMINO)-2-(HYDROXYMETHYL)-2,3,4,5-TETRAHYDROPYRIDINE-3,4,5-TRIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1U30 _cell.length_a 52.26 _cell.length_b 68.63 _cell.length_c 131.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U30 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 A SG CYS 86 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 70 A CYS 70 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 A SG CYS 141 A CYS 141 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 A SG CYS 378 A CYS 378 1_555 A SG CYS 384 A CYS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 A SG CYS 450 A CYS 450 1_555 A SG CYS 462 A CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A C PCA 1 A PCA 1 1_555 A N TYR 2 A TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale2 A ND2 ASN 461 A ASN 461 1_555 B C1 NAG . A NAG 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? metalc ? metalc1 A OD1 ASN 100 A ASN 100 1_555 D CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc2 A O ARG 158 A ARG 158 1_555 D CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc3 A OD2 ASP 167 A ASP 167 1_555 D CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc4 A OD1 ASP 167 A ASP 167 1_555 D CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc5 A O HIS 201 A HIS 201 1_555 D CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? # _chem_comp.formula 'C6 H12 N2 O5' _chem_comp.formula_weight 192.17 _chem_comp.id GOX _chem_comp.mon_nstd_flag . _chem_comp.name (2S,3S,4R,5R)-6-(HYDROXYAMINO)-2-(HYDROXYMETHYL)-2,3,4,5-TETRAHYDROPYRIDINE-3,4,5-TRIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms D-GLUCONHYDROXIMO-1,5-LACTAM # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 GOX doub 129 z n C1 C2 GOX sing 130 n n C1 N5 GOX sing 131 n n N1 O7 GOX sing 132 n n C2 O2 GOX sing 133 n n C2 C3 GOX sing 134 n n C2 HC2 GOX sing 135 n n N5 C5 GOX sing 136 n n N5 HN5 GOX sing 137 n n O7 HO7 GOX sing 138 n n O2 HO2 GOX sing 139 n n C3 O3 GOX sing 140 n n C3 C4 GOX sing 141 n n C3 HC3 GOX sing 142 n n O3 HO3 GOX sing 143 n n C4 O4 GOX sing 144 n n C4 C5 GOX sing 145 n n C4 HC4 GOX sing 146 n n O4 HO4 GOX sing 147 n n C5 C6 GOX sing 148 n n C5 HC5 GOX sing 149 n n C6 O6 GOX sing 150 n n C6 HC61 GOX sing 151 n n C6 HC62 GOX sing 152 n n O6 HO6 GOX sing 153 n n # _atom_sites.entry_id 1U30 _atom_sites.fract_transf_matrix[1][1] 0.019135 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014571 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00761 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 499 499 NAG NAG . C 3 LAG A 1 501 501 LAG LAG . D 4 CA A 1 497 497 CA CA . E 5 CL A 1 498 498 CL CL . F 6 GOX A 1 500 500 GOX GOX . G 7 HOH A 1 502 502 HOH WAT . G 7 HOH A 2 503 503 HOH WAT . G 7 HOH A 3 504 504 HOH WAT . G 7 HOH A 4 505 505 HOH WAT . G 7 HOH A 5 506 506 HOH WAT . G 7 HOH A 6 507 507 HOH WAT . G 7 HOH A 7 508 508 HOH WAT . G 7 HOH A 8 509 509 HOH WAT . G 7 HOH A 9 510 510 HOH WAT . G 7 HOH A 10 511 511 HOH WAT . G 7 HOH A 11 512 512 HOH WAT . G 7 HOH A 12 513 513 HOH WAT . G 7 HOH A 13 514 514 HOH WAT . G 7 HOH A 14 515 515 HOH WAT . G 7 HOH A 15 516 516 HOH WAT . G 7 HOH A 16 517 517 HOH WAT . G 7 HOH A 17 518 518 HOH WAT . G 7 HOH A 18 519 519 HOH WAT . G 7 HOH A 19 520 520 HOH WAT . G 7 HOH A 20 521 521 HOH WAT . G 7 HOH A 21 522 522 HOH WAT . G 7 HOH A 22 523 523 HOH WAT . G 7 HOH A 23 524 524 HOH WAT . G 7 HOH A 24 525 525 HOH WAT . G 7 HOH A 25 526 526 HOH WAT . G 7 HOH A 26 527 527 HOH WAT . G 7 HOH A 27 528 528 HOH WAT . G 7 HOH A 28 529 529 HOH WAT . G 7 HOH A 29 530 530 HOH WAT . G 7 HOH A 30 531 531 HOH WAT . G 7 HOH A 31 532 532 HOH WAT . G 7 HOH A 32 533 533 HOH WAT . G 7 HOH A 33 534 534 HOH WAT . G 7 HOH A 34 535 535 HOH WAT . G 7 HOH A 35 536 536 HOH WAT . G 7 HOH A 36 537 537 HOH WAT . G 7 HOH A 37 538 538 HOH WAT . G 7 HOH A 38 539 539 HOH WAT . G 7 HOH A 39 540 540 HOH WAT . G 7 HOH A 40 541 541 HOH WAT . G 7 HOH A 41 542 542 HOH WAT . G 7 HOH A 42 543 543 HOH WAT . G 7 HOH A 43 544 544 HOH WAT . G 7 HOH A 44 545 545 HOH WAT . G 7 HOH A 45 546 546 HOH WAT . G 7 HOH A 46 547 547 HOH WAT . G 7 HOH A 47 548 548 HOH WAT . G 7 HOH A 48 549 549 HOH WAT . G 7 HOH A 49 550 550 HOH WAT . G 7 HOH A 50 551 551 HOH WAT . G 7 HOH A 51 552 552 HOH WAT . G 7 HOH A 52 553 553 HOH WAT . G 7 HOH A 53 554 554 HOH WAT . G 7 HOH A 54 555 555 HOH WAT . G 7 HOH A 55 556 556 HOH WAT . G 7 HOH A 56 557 557 HOH WAT . G 7 HOH A 57 558 558 HOH WAT . G 7 HOH A 58 559 559 HOH WAT . G 7 HOH A 59 560 560 HOH WAT . G 7 HOH A 60 561 561 HOH WAT . G 7 HOH A 61 562 562 HOH WAT . G 7 HOH A 62 563 563 HOH WAT . G 7 HOH A 63 564 564 HOH WAT . G 7 HOH A 64 565 565 HOH WAT . G 7 HOH A 65 566 566 HOH WAT . G 7 HOH A 66 567 567 HOH WAT . G 7 HOH A 67 568 568 HOH WAT . G 7 HOH A 68 569 569 HOH WAT . G 7 HOH A 69 570 570 HOH WAT . G 7 HOH A 70 571 571 HOH WAT . G 7 HOH A 71 572 572 HOH WAT . G 7 HOH A 72 573 573 HOH WAT . G 7 HOH A 73 574 574 HOH WAT . G 7 HOH A 74 575 575 HOH WAT . G 7 HOH A 75 576 576 HOH WAT . G 7 HOH A 76 577 577 HOH WAT . G 7 HOH A 77 578 578 HOH WAT . G 7 HOH A 78 579 579 HOH WAT . G 7 HOH A 79 580 580 HOH WAT . G 7 HOH A 80 581 581 HOH WAT . G 7 HOH A 81 582 582 HOH WAT . G 7 HOH A 82 583 583 HOH WAT . G 7 HOH A 83 584 584 HOH WAT . G 7 HOH A 84 585 585 HOH WAT . G 7 HOH A 85 586 586 HOH WAT . G 7 HOH A 86 587 587 HOH WAT . G 7 HOH A 87 588 588 HOH WAT . G 7 HOH A 88 589 589 HOH WAT . G 7 HOH A 89 590 590 HOH WAT . G 7 HOH A 90 591 591 HOH WAT . G 7 HOH A 91 592 592 HOH WAT . G 7 HOH A 92 593 593 HOH WAT . G 7 HOH A 93 594 594 HOH WAT . G 7 HOH A 94 595 595 HOH WAT . G 7 HOH A 95 596 596 HOH WAT . G 7 HOH A 96 597 597 HOH WAT . G 7 HOH A 97 598 598 HOH WAT . G 7 HOH A 98 599 599 HOH WAT . G 7 HOH A 99 600 600 HOH WAT . G 7 HOH A 100 601 601 HOH WAT . G 7 HOH A 101 602 602 HOH WAT . G 7 HOH A 102 603 603 HOH WAT . G 7 HOH A 103 604 604 HOH WAT . G 7 HOH A 104 605 605 HOH WAT . G 7 HOH A 105 606 606 HOH WAT . G 7 HOH A 106 607 607 HOH WAT . G 7 HOH A 107 608 608 HOH WAT . G 7 HOH A 108 609 609 HOH WAT . G 7 HOH A 109 610 610 HOH WAT . G 7 HOH A 110 611 611 HOH WAT . G 7 HOH A 111 612 612 HOH WAT . G 7 HOH A 112 613 613 HOH WAT . G 7 HOH A 113 614 614 HOH WAT . G 7 HOH A 114 615 615 HOH WAT . G 7 HOH A 115 616 616 HOH WAT . G 7 HOH A 116 617 617 HOH WAT . G 7 HOH A 117 618 618 HOH WAT . G 7 HOH A 118 619 619 HOH WAT . G 7 HOH A 119 620 620 HOH WAT . G 7 HOH A 120 621 621 HOH WAT . G 7 HOH A 121 622 622 HOH WAT . G 7 HOH A 122 623 623 HOH WAT . G 7 HOH A 123 624 624 HOH WAT . G 7 HOH A 124 625 625 HOH WAT . G 7 HOH A 125 626 626 HOH WAT . G 7 HOH A 126 627 627 HOH WAT . G 7 HOH A 127 628 628 HOH WAT . G 7 HOH A 128 629 629 HOH WAT . G 7 HOH A 129 630 630 HOH WAT . G 7 HOH A 130 631 631 HOH WAT . G 7 HOH A 131 632 632 HOH WAT . G 7 HOH A 132 633 633 HOH WAT . G 7 HOH A 133 634 634 HOH WAT . G 7 HOH A 134 635 635 HOH WAT . G 7 HOH A 135 636 636 HOH WAT . G 7 HOH A 136 637 637 HOH WAT . G 7 HOH A 137 638 638 HOH WAT . G 7 HOH A 138 639 639 HOH WAT . G 7 HOH A 139 640 640 HOH WAT . G 7 HOH A 140 641 641 HOH WAT . G 7 HOH A 141 642 642 HOH WAT . G 7 HOH A 142 643 643 HOH WAT . G 7 HOH A 143 644 644 HOH WAT . G 7 HOH A 144 645 645 HOH WAT . G 7 HOH A 145 646 646 HOH WAT . G 7 HOH A 146 647 647 HOH WAT . G 7 HOH A 147 648 648 HOH WAT . G 7 HOH A 148 649 649 HOH WAT . G 7 HOH A 149 650 650 HOH WAT . G 7 HOH A 150 651 651 HOH WAT . G 7 HOH A 151 652 652 HOH WAT . G 7 HOH A 152 653 653 HOH WAT . G 7 HOH A 153 654 654 HOH WAT . G 7 HOH A 154 655 655 HOH WAT . G 7 HOH A 155 656 656 HOH WAT . G 7 HOH A 156 657 657 HOH WAT . G 7 HOH A 157 658 658 HOH WAT . G 7 HOH A 158 659 659 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOX . . . F 6 5.037 14.492 42.578 1 60.33 ? C1 GOX 500 A 1 HETATM 2 N N1 GOX . . . F 6 5.673 14.283 43.743 1 59.92 ? N1 GOX 500 A 1 HETATM 3 C C2 GOX . . . F 6 5.871 14.391 41.284 1 61.78 ? C2 GOX 500 A 1 HETATM 4 N N5 GOX . . . F 6 3.686 14.738 42.657 1 60.59 ? N5 GOX 500 A 1 HETATM 5 O O7 GOX . . . F 6 5.077 14.323 44.914 1 63.08 ? O7 GOX 500 A 1 HETATM 6 O O2 GOX . . . F 6 7.173 14.98 41.2 1 59.73 ? O2 GOX 500 A 1 HETATM 7 C C3 GOX . . . F 6 5.007 14.729 40.048 1 61.01 ? C3 GOX 500 A 1 HETATM 8 O O3 GOX . . . F 6 5.703 14.094 38.979 1 62.46 ? O3 GOX 500 A 1 HETATM 9 C C4 GOX . . . F 6 3.558 14.16 40.245 1 60.64 ? C4 GOX 500 A 1 HETATM 10 O O4 GOX . . . F 6 2.759 14.419 39.085 1 61.47 ? O4 GOX 500 A 1 HETATM 11 C C5 GOX . . . F 6 2.893 14.959 41.434 1 59.66 ? C5 GOX 500 A 1 HETATM 12 C C6 GOX . . . F 6 1.477 14.587 41.828 1 58.67 ? C6 GOX 500 A 1 HETATM 13 O O6 GOX . . . F 6 1.23 13.183 41.67 1 58.27 ? O6 GOX 500 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 372 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 13 #