data_1U31 # _model_server_result.job_id JvBPNeK-HlfiOjiquwKhSg _model_server_result.datetime_utc '2024-11-08 18:52:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u31 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":410}' # _entry.id 1U31 # _exptl.entry_id 1U31 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1U31 _cell.length_a 57.814 _cell.length_b 57.814 _cell.length_c 250.934 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U31 _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 PISA dimeric 2 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 A,C,D,E,I 3 1 B,F,G,H,J 3 2 B,F,G,H,J 4 1,3 A,C,D,E,I 5 1,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 57.814 0 0 3 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/4 0 -1 0 -1 0 0 0 0 -1 57.814 57.814 62.7335 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1U31 _atom_sites.fract_transf_matrix[1][1] 0.017297 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017297 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003985 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 430 230 SO4 SO4 . D 3 NDP A 1 300 300 NDP NAP . E 4 GOL A 1 410 210 GOL GOL . F 2 SO4 B 1 440 240 SO4 SO4 . G 3 NDP B 1 400 300 NDP NAP . H 4 GOL B 1 420 220 GOL GOL . I 5 HOH A 1 431 2 HOH HOH . I 5 HOH A 2 432 3 HOH HOH . I 5 HOH A 3 433 9 HOH HOH . I 5 HOH A 4 434 13 HOH HOH . I 5 HOH A 5 435 14 HOH HOH . I 5 HOH A 6 436 17 HOH HOH . I 5 HOH A 7 437 19 HOH HOH . I 5 HOH A 8 438 20 HOH HOH . I 5 HOH A 9 439 22 HOH HOH . I 5 HOH A 10 440 23 HOH HOH . I 5 HOH A 11 441 24 HOH HOH . I 5 HOH A 12 442 25 HOH HOH . I 5 HOH A 13 443 27 HOH HOH . I 5 HOH A 14 444 29 HOH HOH . I 5 HOH A 15 445 30 HOH HOH . I 5 HOH A 16 446 31 HOH HOH . I 5 HOH A 17 447 36 HOH HOH . I 5 HOH A 18 448 40 HOH HOH . I 5 HOH A 19 449 41 HOH HOH . I 5 HOH A 20 450 42 HOH HOH . I 5 HOH A 21 451 43 HOH HOH . I 5 HOH A 22 452 49 HOH HOH . I 5 HOH A 23 453 54 HOH HOH . I 5 HOH A 24 454 55 HOH HOH . I 5 HOH A 25 455 56 HOH HOH . I 5 HOH A 26 456 58 HOH HOH . I 5 HOH A 27 457 59 HOH HOH . I 5 HOH A 28 458 60 HOH HOH . I 5 HOH A 29 459 61 HOH HOH . I 5 HOH A 30 460 62 HOH HOH . I 5 HOH A 31 461 65 HOH HOH . I 5 HOH A 32 462 69 HOH HOH . I 5 HOH A 33 463 72 HOH HOH . I 5 HOH A 34 464 74 HOH HOH . I 5 HOH A 35 465 75 HOH HOH . I 5 HOH A 36 466 78 HOH HOH . I 5 HOH A 37 467 80 HOH HOH . I 5 HOH A 38 468 82 HOH HOH . I 5 HOH A 39 469 85 HOH HOH . I 5 HOH A 40 470 88 HOH HOH . I 5 HOH A 41 471 90 HOH HOH . I 5 HOH A 42 472 91 HOH HOH . I 5 HOH A 43 473 109 HOH HOH . I 5 HOH A 44 474 115 HOH HOH . I 5 HOH A 45 475 117 HOH HOH . I 5 HOH A 46 476 123 HOH HOH . I 5 HOH A 47 477 124 HOH HOH . I 5 HOH A 48 478 128 HOH HOH . I 5 HOH A 49 479 129 HOH HOH . I 5 HOH A 50 480 132 HOH HOH . I 5 HOH A 51 481 133 HOH HOH . I 5 HOH A 52 482 144 HOH HOH . I 5 HOH A 53 483 150 HOH HOH . I 5 HOH A 54 484 151 HOH HOH . I 5 HOH A 55 485 152 HOH HOH . I 5 HOH A 56 486 155 HOH HOH . I 5 HOH A 57 487 156 HOH HOH . I 5 HOH A 58 488 158 HOH HOH . I 5 HOH A 59 489 159 HOH HOH . I 5 HOH A 60 490 161 HOH HOH . I 5 HOH A 61 491 162 HOH HOH . I 5 HOH A 62 492 167 HOH HOH . I 5 HOH A 63 493 169 HOH HOH . I 5 HOH A 64 494 170 HOH HOH . I 5 HOH A 65 495 174 HOH HOH . I 5 HOH A 66 496 176 HOH HOH . I 5 HOH A 67 497 177 HOH HOH . I 5 HOH A 68 498 178 HOH HOH . I 5 HOH A 69 499 180 HOH HOH . I 5 HOH A 70 500 181 HOH HOH . I 5 HOH A 71 501 182 HOH HOH . I 5 HOH A 72 502 184 HOH HOH . I 5 HOH A 73 503 185 HOH HOH . I 5 HOH A 74 504 187 HOH HOH . I 5 HOH A 75 505 190 HOH HOH . I 5 HOH A 76 506 191 HOH HOH . I 5 HOH A 77 507 192 HOH HOH . I 5 HOH A 78 508 194 HOH HOH . I 5 HOH A 79 509 196 HOH HOH . I 5 HOH A 80 510 197 HOH HOH . I 5 HOH A 81 511 198 HOH HOH . I 5 HOH A 82 512 199 HOH HOH . I 5 HOH A 83 513 200 HOH HOH . I 5 HOH A 84 514 201 HOH HOH . I 5 HOH A 85 515 204 HOH HOH . I 5 HOH A 86 516 207 HOH HOH . I 5 HOH A 87 517 212 HOH HOH . I 5 HOH A 88 518 213 HOH HOH . I 5 HOH A 89 519 215 HOH HOH . I 5 HOH A 90 520 216 HOH HOH . I 5 HOH A 91 521 218 HOH HOH . I 5 HOH A 92 522 221 HOH HOH . I 5 HOH A 93 523 222 HOH HOH . I 5 HOH A 94 524 224 HOH HOH . I 5 HOH A 95 525 227 HOH HOH . I 5 HOH A 96 526 228 HOH HOH . I 5 HOH A 97 527 230 HOH HOH . I 5 HOH A 98 528 232 HOH HOH . I 5 HOH A 99 529 233 HOH HOH . I 5 HOH A 100 530 240 HOH HOH . J 5 HOH B 1 441 1 HOH HOH . J 5 HOH B 2 442 4 HOH HOH . J 5 HOH B 3 443 5 HOH HOH . J 5 HOH B 4 444 6 HOH HOH . J 5 HOH B 5 445 7 HOH HOH . J 5 HOH B 6 446 8 HOH HOH . J 5 HOH B 7 447 10 HOH HOH . J 5 HOH B 8 448 11 HOH HOH . J 5 HOH B 9 449 12 HOH HOH . J 5 HOH B 10 450 15 HOH HOH . J 5 HOH B 11 451 16 HOH HOH . J 5 HOH B 12 452 18 HOH HOH . J 5 HOH B 13 453 21 HOH HOH . J 5 HOH B 14 454 26 HOH HOH . J 5 HOH B 15 455 28 HOH HOH . J 5 HOH B 16 456 32 HOH HOH . J 5 HOH B 17 457 33 HOH HOH . J 5 HOH B 18 458 34 HOH HOH . J 5 HOH B 19 459 35 HOH HOH . J 5 HOH B 20 460 37 HOH HOH . J 5 HOH B 21 461 38 HOH HOH . J 5 HOH B 22 462 39 HOH HOH . J 5 HOH B 23 463 44 HOH HOH . J 5 HOH B 24 464 45 HOH HOH . J 5 HOH B 25 465 46 HOH HOH . J 5 HOH B 26 466 47 HOH HOH . J 5 HOH B 27 467 48 HOH HOH . J 5 HOH B 28 468 50 HOH HOH . J 5 HOH B 29 469 51 HOH HOH . J 5 HOH B 30 470 52 HOH HOH . J 5 HOH B 31 471 53 HOH HOH . J 5 HOH B 32 472 57 HOH HOH . J 5 HOH B 33 473 63 HOH HOH . J 5 HOH B 34 474 64 HOH HOH . J 5 HOH B 35 475 66 HOH HOH . J 5 HOH B 36 476 67 HOH HOH . J 5 HOH B 37 477 68 HOH HOH . J 5 HOH B 38 478 71 HOH HOH . J 5 HOH B 39 479 73 HOH HOH . J 5 HOH B 40 480 76 HOH HOH . J 5 HOH B 41 481 77 HOH HOH . J 5 HOH B 42 482 79 HOH HOH . J 5 HOH B 43 483 81 HOH HOH . J 5 HOH B 44 484 83 HOH HOH . J 5 HOH B 45 485 84 HOH HOH . J 5 HOH B 46 486 87 HOH HOH . J 5 HOH B 47 487 89 HOH HOH . J 5 HOH B 48 488 94 HOH HOH . J 5 HOH B 49 489 97 HOH HOH . J 5 HOH B 50 490 98 HOH HOH . J 5 HOH B 51 491 99 HOH HOH . J 5 HOH B 52 492 101 HOH HOH . J 5 HOH B 53 493 103 HOH HOH . J 5 HOH B 54 494 104 HOH HOH . J 5 HOH B 55 495 105 HOH HOH . J 5 HOH B 56 496 106 HOH HOH . J 5 HOH B 57 497 107 HOH HOH . J 5 HOH B 58 498 108 HOH HOH . J 5 HOH B 59 499 110 HOH HOH . J 5 HOH B 60 500 111 HOH HOH . J 5 HOH B 61 501 112 HOH HOH . J 5 HOH B 62 502 113 HOH HOH . J 5 HOH B 63 503 114 HOH HOH . J 5 HOH B 64 504 116 HOH HOH . J 5 HOH B 65 505 118 HOH HOH . J 5 HOH B 66 506 119 HOH HOH . J 5 HOH B 67 507 120 HOH HOH . J 5 HOH B 68 508 121 HOH HOH . J 5 HOH B 69 509 122 HOH HOH . J 5 HOH B 70 510 125 HOH HOH . J 5 HOH B 71 511 126 HOH HOH . J 5 HOH B 72 512 127 HOH HOH . J 5 HOH B 73 513 130 HOH HOH . J 5 HOH B 74 514 131 HOH HOH . J 5 HOH B 75 515 134 HOH HOH . J 5 HOH B 76 516 135 HOH HOH . J 5 HOH B 77 517 136 HOH HOH . J 5 HOH B 78 518 138 HOH HOH . J 5 HOH B 79 519 142 HOH HOH . J 5 HOH B 80 520 143 HOH HOH . J 5 HOH B 81 521 145 HOH HOH . J 5 HOH B 82 522 148 HOH HOH . J 5 HOH B 83 523 149 HOH HOH . J 5 HOH B 84 524 153 HOH HOH . J 5 HOH B 85 525 154 HOH HOH . J 5 HOH B 86 526 160 HOH HOH . J 5 HOH B 87 527 164 HOH HOH . J 5 HOH B 88 528 165 HOH HOH . J 5 HOH B 89 529 168 HOH HOH . J 5 HOH B 90 530 171 HOH HOH . J 5 HOH B 91 531 172 HOH HOH . J 5 HOH B 92 532 173 HOH HOH . J 5 HOH B 93 533 175 HOH HOH . J 5 HOH B 94 534 183 HOH HOH . J 5 HOH B 95 535 186 HOH HOH . J 5 HOH B 96 536 188 HOH HOH . J 5 HOH B 97 537 189 HOH HOH . J 5 HOH B 98 538 193 HOH HOH . J 5 HOH B 99 539 195 HOH HOH . J 5 HOH B 100 540 202 HOH HOH . J 5 HOH B 101 541 205 HOH HOH . J 5 HOH B 102 542 206 HOH HOH . J 5 HOH B 103 543 209 HOH HOH . J 5 HOH B 104 544 211 HOH HOH . J 5 HOH B 105 545 214 HOH HOH . J 5 HOH B 106 546 217 HOH HOH . J 5 HOH B 107 547 219 HOH HOH . J 5 HOH B 108 548 220 HOH HOH . J 5 HOH B 109 549 223 HOH HOH . J 5 HOH B 110 550 225 HOH HOH . J 5 HOH B 111 551 226 HOH HOH . J 5 HOH B 112 552 231 HOH HOH . J 5 HOH B 113 553 234 HOH HOH . J 5 HOH B 114 554 235 HOH HOH . J 5 HOH B 115 555 236 HOH HOH . J 5 HOH B 116 556 237 HOH HOH . J 5 HOH B 117 557 238 HOH HOH . J 5 HOH B 118 558 239 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 33.49 24.618 26.11 1 48.49 ? C1 GOL 410 A 1 HETATM 2 O O1 GOL . . . E 4 33.921 25.713 26.885 1 48.28 ? O1 GOL 410 A 1 HETATM 3 C C2 GOL . . . E 4 34.688 23.978 25.418 1 48.41 ? C2 GOL 410 A 1 HETATM 4 O O2 GOL . . . E 4 34.238 23.065 24.442 1 48.64 ? O2 GOL 410 A 1 HETATM 5 C C3 GOL . . . E 4 35.566 23.255 26.433 1 48.57 ? C3 GOL 410 A 1 HETATM 6 O O3 GOL . . . E 4 36.301 24.204 27.179 1 48.64 ? O3 GOL 410 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #