data_1U3C # _model_server_result.job_id tU7i9RJWhfGwYm8XfBsBJg _model_server_result.datetime_utc '2024-11-01 17:25:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u3c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":510}' # _entry.id 1U3C # _exptl.entry_id 1U3C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1U3C _cell.length_a 169.43 _cell.length_b 169.43 _cell.length_c 104.245 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U3C _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 80 1_555 A SG CYS 190 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A O ASN 238 A ASN 238 1_555 C MG MG . A MG 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc2 A O LYS 241 A LYS 241 1_555 D MG MG . A MG 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.037 ? metalc ? metalc3 A O SER 244 A SER 244 1_555 D MG MG . A MG 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc4 A N SER 244 A SER 244 1_555 D MG MG . A MG 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc5 A OG1 THR 246 A THR 246 1_555 C MG MG . A MG 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc6 A OG1 THR 246 A THR 246 1_555 D MG MG . A MG 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc7 A NE2 HIS 358 A HIS 358 1_555 C MG MG . A MG 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.014 ? metalc ? metalc8 A OD1 ASP 359 A ASP 359 1_555 B MG MG . A MG 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.08 ? metalc ? metalc9 A OD2 ASP 359 A ASP 359 1_555 B MG MG . A MG 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc10 B MG MG . A MG 514 1_555 H O6 HEZ . A HEZ 518 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.985 ? metalc ? metalc11 B MG MG . A MG 514 1_555 I O HOH . A HOH 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.073 ? metalc ? metalc12 B MG MG . A MG 514 1_555 I O HOH . A HOH 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 1U3C _atom_sites.fract_transf_matrix[1][1] 0.005902 _atom_sites.fract_transf_matrix[1][2] 0.003408 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006815 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009593 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 514 514 MG MG2 . C 2 MG A 1 515 515 MG MG2 . D 2 MG A 1 516 516 MG MG2 . E 3 CL A 1 517 517 CL CL1 . F 4 FAD A 1 510 510 FAD FAD . G 5 NDS A 1 512 512 NDS SB . H 6 HEZ A 1 518 518 HEZ HEZ . I 7 HOH A 1 519 1 HOH WAT . I 7 HOH A 2 520 2 HOH WAT . I 7 HOH A 3 521 3 HOH WAT . I 7 HOH A 4 522 4 HOH WAT . I 7 HOH A 5 523 5 HOH WAT . I 7 HOH A 6 524 7 HOH WAT . I 7 HOH A 7 525 8 HOH WAT . I 7 HOH A 8 526 9 HOH WAT . I 7 HOH A 9 527 10 HOH WAT . I 7 HOH A 10 528 11 HOH WAT . I 7 HOH A 11 529 12 HOH WAT . I 7 HOH A 12 530 13 HOH WAT . I 7 HOH A 13 531 14 HOH WAT . I 7 HOH A 14 532 15 HOH WAT . I 7 HOH A 15 533 16 HOH WAT . I 7 HOH A 16 534 17 HOH WAT . I 7 HOH A 17 535 18 HOH WAT . I 7 HOH A 18 536 19 HOH WAT . I 7 HOH A 19 537 20 HOH WAT . I 7 HOH A 20 538 21 HOH WAT . I 7 HOH A 21 539 22 HOH WAT . I 7 HOH A 22 540 23 HOH WAT . I 7 HOH A 23 541 24 HOH WAT . I 7 HOH A 24 542 25 HOH WAT . I 7 HOH A 25 543 26 HOH WAT . I 7 HOH A 26 544 27 HOH WAT . I 7 HOH A 27 545 28 HOH WAT . I 7 HOH A 28 546 29 HOH WAT . I 7 HOH A 29 547 30 HOH WAT . I 7 HOH A 30 548 31 HOH WAT . I 7 HOH A 31 549 32 HOH WAT . I 7 HOH A 32 550 33 HOH WAT . I 7 HOH A 33 551 34 HOH WAT . I 7 HOH A 34 552 35 HOH WAT . I 7 HOH A 35 553 36 HOH WAT . I 7 HOH A 36 554 37 HOH WAT . I 7 HOH A 37 555 38 HOH WAT . I 7 HOH A 38 556 39 HOH WAT . I 7 HOH A 39 557 40 HOH WAT . I 7 HOH A 40 558 41 HOH WAT . I 7 HOH A 41 559 42 HOH WAT . I 7 HOH A 42 560 43 HOH WAT . I 7 HOH A 43 561 44 HOH WAT . I 7 HOH A 44 562 45 HOH WAT . I 7 HOH A 45 563 46 HOH WAT . I 7 HOH A 46 564 47 HOH WAT . I 7 HOH A 47 565 48 HOH WAT . I 7 HOH A 48 566 49 HOH WAT . I 7 HOH A 49 567 50 HOH WAT . I 7 HOH A 50 568 51 HOH WAT . I 7 HOH A 51 569 52 HOH WAT . I 7 HOH A 52 570 53 HOH WAT . I 7 HOH A 53 571 54 HOH WAT . I 7 HOH A 54 572 55 HOH WAT . I 7 HOH A 55 573 56 HOH WAT . I 7 HOH A 56 574 57 HOH WAT . I 7 HOH A 57 575 58 HOH WAT . I 7 HOH A 58 576 59 HOH WAT . I 7 HOH A 59 577 60 HOH WAT . I 7 HOH A 60 578 61 HOH WAT . I 7 HOH A 61 579 62 HOH WAT . I 7 HOH A 62 580 63 HOH WAT . I 7 HOH A 63 581 64 HOH WAT . I 7 HOH A 64 582 65 HOH WAT . I 7 HOH A 65 583 66 HOH WAT . I 7 HOH A 66 584 67 HOH WAT . I 7 HOH A 67 585 69 HOH WAT . I 7 HOH A 68 586 70 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . F 4 68.368 -4.787 72.157 1 31.89 ? PA FAD 510 A 1 HETATM 2 O O1A FAD . . . F 4 67.922 -5.418 70.902 1 23.91 ? O1A FAD 510 A 1 HETATM 3 O O2A FAD . . . F 4 69.522 -5.376 72.862 1 29.65 ? O2A FAD 510 A 1 HETATM 4 O O5B FAD . . . F 4 68.678 -3.224 71.865 1 36.36 ? O5B FAD 510 A 1 HETATM 5 C C5B FAD . . . F 4 69.261 -2.386 72.864 1 33.89 ? C5B FAD 510 A 1 HETATM 6 C C4B FAD . . . F 4 68.276 -1.315 73.345 1 29.85 ? C4B FAD 510 A 1 HETATM 7 O O4B FAD . . . F 4 67.728 -0.58 72.235 1 32.39 ? O4B FAD 510 A 1 HETATM 8 C C3B FAD . . . F 4 67.045 -1.916 74.015 1 28.73 ? C3B FAD 510 A 1 HETATM 9 O O3B FAD . . . F 4 67.357 -2.285 75.36 1 27.97 ? O3B FAD 510 A 1 HETATM 10 C C2B FAD . . . F 4 66.165 -0.669 74.029 1 22.33 ? C2B FAD 510 A 1 HETATM 11 O O2B FAD . . . F 4 66.645 0.254 75.015 1 29.84 ? O2B FAD 510 A 1 HETATM 12 C C1B FAD . . . F 4 66.422 -0.119 72.627 1 28.17 ? C1B FAD 510 A 1 HETATM 13 N N9A FAD . . . F 4 65.45 -0.661 71.653 1 29.48 ? N9A FAD 510 A 1 HETATM 14 C C8A FAD . . . F 4 65.614 -1.749 70.901 1 32.43 ? C8A FAD 510 A 1 HETATM 15 N N7A FAD . . . F 4 64.57 -1.879 70.08 1 34.25 ? N7A FAD 510 A 1 HETATM 16 C C5A FAD . . . F 4 63.733 -0.876 70.318 1 28.77 ? C5A FAD 510 A 1 HETATM 17 C C6A FAD . . . F 4 62.491 -0.522 69.802 1 29.51 ? C6A FAD 510 A 1 HETATM 18 N N6A FAD . . . F 4 61.927 -1.236 68.834 1 24.62 ? N6A FAD 510 A 1 HETATM 19 N N1A FAD . . . F 4 61.843 0.607 70.324 1 34.48 ? N1A FAD 510 A 1 HETATM 20 C C2A FAD . . . F 4 62.462 1.345 71.342 1 39.08 ? C2A FAD 510 A 1 HETATM 21 N N3A FAD . . . F 4 63.645 0.978 71.804 1 37.25 ? N3A FAD 510 A 1 HETATM 22 C C4A FAD . . . F 4 64.288 -0.096 71.326 1 32.94 ? C4A FAD 510 A 1 HETATM 23 N N1 FAD . . . F 4 61.117 -1.278 74.894 1 27.11 ? N1 FAD 510 A 1 HETATM 24 C C2 FAD . . . F 4 61.241 -0.835 76.217 1 30.84 ? C2 FAD 510 A 1 HETATM 25 O O2 FAD . . . F 4 62.331 -0.463 76.649 1 32.91 ? O2 FAD 510 A 1 HETATM 26 N N3 FAD . . . F 4 60.095 -0.735 77.018 1 32.34 ? N3 FAD 510 A 1 HETATM 27 C C4 FAD . . . F 4 58.839 -1.058 76.49 1 32.41 ? C4 FAD 510 A 1 HETATM 28 O O4 FAD . . . F 4 57.84 -0.947 77.193 1 29.49 ? O4 FAD 510 A 1 HETATM 29 C C4X FAD . . . F 4 58.724 -1.484 75.167 1 27.14 ? C4X FAD 510 A 1 HETATM 30 N N5 FAD . . . F 4 57.464 -1.767 74.627 1 21.71 ? N5 FAD 510 A 1 HETATM 31 C C5X FAD . . . F 4 57.332 -2.179 73.293 1 26.45 ? C5X FAD 510 A 1 HETATM 32 C C6 FAD . . . F 4 56.075 -2.422 72.764 1 23.86 ? C6 FAD 510 A 1 HETATM 33 C C7 FAD . . . F 4 55.931 -2.806 71.434 1 29.54 ? C7 FAD 510 A 1 HETATM 34 C C7M FAD . . . F 4 54.529 -2.993 70.85 1 28.17 ? C7M FAD 510 A 1 HETATM 35 C C8 FAD . . . F 4 57.069 -2.962 70.638 1 29.44 ? C8 FAD 510 A 1 HETATM 36 C C8M FAD . . . F 4 56.954 -3.454 69.196 1 32.15 ? C8M FAD 510 A 1 HETATM 37 C C9 FAD . . . F 4 58.326 -2.706 71.17 1 25.34 ? C9 FAD 510 A 1 HETATM 38 C C9A FAD . . . F 4 58.477 -2.306 72.495 1 22.43 ? C9A FAD 510 A 1 HETATM 39 N N10 FAD . . . F 4 59.739 -2.012 73.029 1 30.81 ? N10 FAD 510 A 1 HETATM 40 C C10 FAD . . . F 4 59.86 -1.6 74.371 1 27.93 ? C10 FAD 510 A 1 HETATM 41 C C1' FAD . . . F 4 60.951 -2.092 72.179 1 32.7 ? C1' FAD 510 A 1 HETATM 42 C C2' FAD . . . F 4 61.792 -3.368 72.251 1 32.81 ? C2' FAD 510 A 1 HETATM 43 O O2' FAD . . . F 4 60.98 -4.522 72.037 1 41.41 ? O2' FAD 510 A 1 HETATM 44 C C3' FAD . . . F 4 62.559 -3.529 73.572 1 33.84 ? C3' FAD 510 A 1 HETATM 45 O O3' FAD . . . F 4 63.265 -2.323 73.86 1 38.16 ? O3' FAD 510 A 1 HETATM 46 C C4' FAD . . . F 4 63.558 -4.685 73.443 1 34.5 ? C4' FAD 510 A 1 HETATM 47 O O4' FAD . . . F 4 62.848 -5.886 73.135 1 36.61 ? O4' FAD 510 A 1 HETATM 48 C C5' FAD . . . F 4 64.387 -4.903 74.708 1 31.74 ? C5' FAD 510 A 1 HETATM 49 O O5' FAD . . . F 4 65.36 -5.935 74.493 1 37.3 ? O5' FAD 510 A 1 HETATM 50 P P FAD . . . F 4 66.94 -5.622 74.491 1 32.46 ? P FAD 510 A 1 HETATM 51 O O1P FAD . . . F 4 67.225 -4.824 75.705 1 34.7 ? O1P FAD 510 A 1 HETATM 52 O O2P FAD . . . F 4 67.673 -6.896 74.319 1 31.24 ? O2P FAD 510 A 1 HETATM 53 O O3P FAD . . . F 4 67.11 -4.709 73.173 1 30.91 ? O3P FAD 510 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 53 #