data_1U3D # _model_server_result.job_id P26sYq1orKkwlVVDqyPe-Q _model_server_result.datetime_utc '2024-11-24 14:04:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u3d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":516}' # _entry.id 1U3D # _exptl.entry_id 1U3D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1U3D _cell.length_a 169.213 _cell.length_b 169.213 _cell.length_c 104.521 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U3D _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 80 1_555 A SG CYS 190 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc1 A O ASN 219 A ASN 219 1_555 E MG MG . A MG 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc2 A O ASN 238 A ASN 238 1_555 C MG MG . A MG 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc3 A O SER 244 A SER 244 1_555 D MG MG . A MG 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc4 A N SER 244 A SER 244 1_555 D MG MG . A MG 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc5 A OG1 THR 246 A THR 246 1_555 C MG MG . A MG 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc6 A OG1 THR 246 A THR 246 1_555 D MG MG . A MG 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc7 A NE2 HIS 358 A HIS 358 1_555 C MG MG . A MG 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.066 ? metalc ? metalc8 H N3B ANP . A ANP 511 1_555 B MG MG . A MG 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc9 H O2A ANP . A ANP 511 1_555 B MG MG . A MG 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc10 I O1 NDS . A NDS 512 1_555 E MG MG . A MG 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1U3D _atom_sites.fract_transf_matrix[1][1] 0.00591 _atom_sites.fract_transf_matrix[1][2] 0.003412 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006824 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009567 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 514 514 MG MG2 . C 2 MG A 1 515 515 MG MG2 . D 2 MG A 1 516 516 MG MG2 . E 2 MG A 1 517 517 MG MG2 . F 3 CL A 1 518 518 CL CL1 . G 4 FAD A 1 510 510 FAD FAD . H 5 ANP A 1 511 511 ANP ANP . I 6 NDS A 1 512 512 NDS SB . J 7 HOH A 1 519 1 HOH HOH . J 7 HOH A 2 520 2 HOH HOH . J 7 HOH A 3 521 3 HOH HOH . J 7 HOH A 4 522 4 HOH HOH . J 7 HOH A 5 523 5 HOH HOH . J 7 HOH A 6 524 6 HOH HOH . J 7 HOH A 7 525 7 HOH HOH . J 7 HOH A 8 526 8 HOH HOH . J 7 HOH A 9 527 9 HOH HOH . J 7 HOH A 10 528 10 HOH HOH . J 7 HOH A 11 529 11 HOH HOH . J 7 HOH A 12 530 12 HOH HOH . J 7 HOH A 13 531 13 HOH HOH . J 7 HOH A 14 532 14 HOH HOH . J 7 HOH A 15 533 15 HOH HOH . J 7 HOH A 16 534 16 HOH HOH . J 7 HOH A 17 535 17 HOH HOH . J 7 HOH A 18 536 18 HOH HOH . J 7 HOH A 19 537 19 HOH HOH . J 7 HOH A 20 538 20 HOH HOH . J 7 HOH A 21 539 21 HOH HOH . J 7 HOH A 22 540 22 HOH HOH . J 7 HOH A 23 541 23 HOH HOH . J 7 HOH A 24 542 24 HOH HOH . J 7 HOH A 25 543 25 HOH HOH . J 7 HOH A 26 544 26 HOH HOH . J 7 HOH A 27 545 27 HOH HOH . J 7 HOH A 28 546 28 HOH HOH . J 7 HOH A 29 547 29 HOH HOH . J 7 HOH A 30 548 30 HOH HOH . J 7 HOH A 31 549 31 HOH HOH . J 7 HOH A 32 550 32 HOH HOH . J 7 HOH A 33 551 33 HOH HOH . J 7 HOH A 34 552 34 HOH HOH . J 7 HOH A 35 553 35 HOH HOH . J 7 HOH A 36 554 36 HOH HOH . J 7 HOH A 37 555 37 HOH HOH . J 7 HOH A 38 556 38 HOH HOH . J 7 HOH A 39 557 39 HOH HOH . J 7 HOH A 40 558 40 HOH HOH . J 7 HOH A 41 559 41 HOH HOH . J 7 HOH A 42 560 42 HOH HOH . J 7 HOH A 43 561 43 HOH HOH . J 7 HOH A 44 562 47 HOH HOH . J 7 HOH A 45 563 48 HOH HOH . J 7 HOH A 46 564 50 HOH HOH . J 7 HOH A 47 565 51 HOH HOH . J 7 HOH A 48 566 52 HOH HOH . J 7 HOH A 49 567 53 HOH HOH . J 7 HOH A 50 568 54 HOH HOH . J 7 HOH A 51 569 55 HOH HOH . J 7 HOH A 52 570 56 HOH HOH . J 7 HOH A 53 571 57 HOH HOH . J 7 HOH A 54 572 58 HOH HOH . J 7 HOH A 55 573 59 HOH HOH . J 7 HOH A 56 574 60 HOH HOH . J 7 HOH A 57 575 61 HOH HOH . J 7 HOH A 58 576 62 HOH HOH . J 7 HOH A 59 577 63 HOH HOH . J 7 HOH A 60 578 64 HOH HOH . J 7 HOH A 61 579 65 HOH HOH . J 7 HOH A 62 580 66 HOH HOH . J 7 HOH A 63 581 67 HOH HOH . J 7 HOH A 64 582 68 HOH HOH . J 7 HOH A 65 583 69 HOH HOH . J 7 HOH A 66 584 70 HOH HOH . J 7 HOH A 67 585 71 HOH HOH . J 7 HOH A 68 586 72 HOH HOH . J 7 HOH A 69 587 73 HOH HOH . J 7 HOH A 70 588 74 HOH HOH . J 7 HOH A 71 589 76 HOH HOH . J 7 HOH A 72 590 77 HOH HOH . J 7 HOH A 73 591 78 HOH HOH . J 7 HOH A 74 592 79 HOH HOH . J 7 HOH A 75 593 80 HOH HOH . J 7 HOH A 76 594 81 HOH HOH . J 7 HOH A 77 595 82 HOH HOH . J 7 HOH A 78 596 83 HOH HOH . J 7 HOH A 79 597 84 HOH HOH . J 7 HOH A 80 598 85 HOH HOH . J 7 HOH A 81 599 86 HOH HOH . J 7 HOH A 82 600 87 HOH HOH . J 7 HOH A 83 601 88 HOH HOH . J 7 HOH A 84 602 89 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 67.237 _atom_site.Cartn_y -14.437 _atom_site.Cartn_z 70.937 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 83.98 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 516 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #