data_1U3F # _model_server_result.job_id VLP3PXWzuxFNyu07mOpwpA _model_server_result.datetime_utc '2024-11-20 17:46:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u3f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 1U3F # _exptl.entry_id 1U3F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1U3F _cell.length_a 45.135 _cell.length_b 74.369 _cell.length_c 110.614 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U3F _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 67 A CYS 42 1_555 B SG CYS 67 B CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc1 A OD2 ASP 149 A ASP 124 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc2 A OD2 ASP 179 A ASP 154 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc3 E O3B ADP . A ADP 201 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc4 E O1A ADP . A ADP 201 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc5 D MG MG . A MG 401 1_555 I O HOH . A HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc6 D MG MG . A MG 401 1_555 I O HOH . A HOH 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc7 B OD2 ASP 149 B ASP 124 1_555 G MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc8 B OD2 ASP 179 B ASP 154 1_555 G MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc9 H O1A ADP . B ADP 202 1_555 G MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc10 H O1B ADP . B ADP 202 1_555 G MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc11 G MG MG . B MG 402 1_555 J O HOH . B HOH 723 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1U3F _atom_sites.fract_transf_matrix[1][1] 0.022156 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013446 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00904 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 301 301 PO4 PO4 . D 3 MG A 1 401 401 MG MG . E 4 ADP A 1 201 201 ADP ADP . F 2 PO4 B 1 302 302 PO4 PO4 . G 3 MG B 1 402 402 MG MG . H 4 ADP B 1 202 202 ADP ADP . I 5 HOH A 1 602 602 HOH TIP . I 5 HOH A 2 603 603 HOH TIP . I 5 HOH A 3 605 605 HOH TIP . I 5 HOH A 4 607 607 HOH TIP . I 5 HOH A 5 608 608 HOH TIP . I 5 HOH A 6 610 610 HOH TIP . I 5 HOH A 7 612 612 HOH TIP . I 5 HOH A 8 614 614 HOH TIP . I 5 HOH A 9 615 615 HOH TIP . I 5 HOH A 10 617 617 HOH TIP . I 5 HOH A 11 620 620 HOH TIP . I 5 HOH A 12 621 621 HOH TIP . I 5 HOH A 13 624 624 HOH TIP . I 5 HOH A 14 627 627 HOH TIP . I 5 HOH A 15 628 628 HOH TIP . I 5 HOH A 16 631 631 HOH TIP . I 5 HOH A 17 632 632 HOH TIP . I 5 HOH A 18 634 634 HOH TIP . I 5 HOH A 19 643 643 HOH TIP . I 5 HOH A 20 644 644 HOH TIP . I 5 HOH A 21 646 646 HOH TIP . I 5 HOH A 22 649 649 HOH TIP . I 5 HOH A 23 652 652 HOH TIP . I 5 HOH A 24 658 658 HOH TIP . I 5 HOH A 25 660 660 HOH TIP . I 5 HOH A 26 661 661 HOH TIP . I 5 HOH A 27 663 663 HOH TIP . I 5 HOH A 28 666 666 HOH TIP . I 5 HOH A 29 667 667 HOH TIP . I 5 HOH A 30 668 668 HOH TIP . I 5 HOH A 31 669 669 HOH TIP . I 5 HOH A 32 670 670 HOH TIP . I 5 HOH A 33 672 672 HOH TIP . I 5 HOH A 34 674 674 HOH TIP . I 5 HOH A 35 676 676 HOH TIP . I 5 HOH A 36 678 678 HOH TIP . I 5 HOH A 37 679 679 HOH TIP . I 5 HOH A 38 681 681 HOH TIP . I 5 HOH A 39 682 682 HOH TIP . I 5 HOH A 40 684 684 HOH TIP . I 5 HOH A 41 685 685 HOH TIP . I 5 HOH A 42 686 686 HOH TIP . I 5 HOH A 43 687 687 HOH TIP . I 5 HOH A 44 690 690 HOH TIP . I 5 HOH A 45 691 691 HOH TIP . I 5 HOH A 46 692 692 HOH TIP . I 5 HOH A 47 693 693 HOH TIP . I 5 HOH A 48 696 696 HOH TIP . I 5 HOH A 49 698 698 HOH TIP . I 5 HOH A 50 699 699 HOH TIP . I 5 HOH A 51 700 700 HOH TIP . I 5 HOH A 52 701 701 HOH TIP . I 5 HOH A 53 702 702 HOH TIP . I 5 HOH A 54 703 703 HOH TIP . I 5 HOH A 55 705 705 HOH TIP . I 5 HOH A 56 706 706 HOH TIP . I 5 HOH A 57 707 707 HOH TIP . I 5 HOH A 58 708 708 HOH TIP . I 5 HOH A 59 711 711 HOH TIP . I 5 HOH A 60 714 714 HOH TIP . I 5 HOH A 61 720 720 HOH TIP . I 5 HOH A 62 722 722 HOH TIP . I 5 HOH A 63 725 725 HOH TIP . I 5 HOH A 64 728 728 HOH TIP . I 5 HOH A 65 729 729 HOH TIP . I 5 HOH A 66 730 730 HOH TIP . I 5 HOH A 67 731 731 HOH TIP . I 5 HOH A 68 734 734 HOH TIP . I 5 HOH A 69 735 735 HOH TIP . I 5 HOH A 70 736 736 HOH TIP . I 5 HOH A 71 737 737 HOH TIP . I 5 HOH A 72 739 739 HOH TIP . I 5 HOH A 73 741 741 HOH TIP . I 5 HOH A 74 742 742 HOH TIP . I 5 HOH A 75 746 746 HOH TIP . I 5 HOH A 76 747 747 HOH TIP . I 5 HOH A 77 749 749 HOH TIP . I 5 HOH A 78 750 750 HOH TIP . I 5 HOH A 79 751 751 HOH TIP . I 5 HOH A 80 752 752 HOH TIP . I 5 HOH A 81 759 759 HOH TIP . I 5 HOH A 82 760 760 HOH TIP . I 5 HOH A 83 768 768 HOH TIP . I 5 HOH A 84 769 769 HOH TIP . I 5 HOH A 85 770 770 HOH TIP . I 5 HOH A 86 771 771 HOH TIP . I 5 HOH A 87 772 772 HOH TIP . I 5 HOH A 88 773 773 HOH TIP . I 5 HOH A 89 774 774 HOH TIP . I 5 HOH A 90 776 776 HOH TIP . I 5 HOH A 91 777 777 HOH TIP . I 5 HOH A 92 779 779 HOH TIP . I 5 HOH A 93 780 780 HOH TIP . I 5 HOH A 94 781 781 HOH TIP . I 5 HOH A 95 782 782 HOH TIP . I 5 HOH A 96 783 783 HOH TIP . I 5 HOH A 97 784 784 HOH TIP . I 5 HOH A 98 785 785 HOH TIP . I 5 HOH A 99 786 786 HOH TIP . I 5 HOH A 100 787 787 HOH TIP . I 5 HOH A 101 790 790 HOH TIP . I 5 HOH A 102 792 792 HOH TIP . I 5 HOH A 103 795 795 HOH TIP . I 5 HOH A 104 796 796 HOH TIP . I 5 HOH A 105 800 800 HOH TIP . I 5 HOH A 106 803 803 HOH TIP . I 5 HOH A 107 804 804 HOH TIP . I 5 HOH A 108 805 805 HOH TIP . I 5 HOH A 109 808 808 HOH TIP . I 5 HOH A 110 809 809 HOH TIP . I 5 HOH A 111 810 810 HOH TIP . I 5 HOH A 112 814 814 HOH TIP . I 5 HOH A 113 815 815 HOH TIP . I 5 HOH A 114 816 816 HOH TIP . I 5 HOH A 115 819 819 HOH TIP . I 5 HOH A 116 822 822 HOH TIP . I 5 HOH A 117 825 825 HOH TIP . I 5 HOH A 118 826 826 HOH TIP . I 5 HOH A 119 827 827 HOH TIP . I 5 HOH A 120 830 830 HOH TIP . I 5 HOH A 121 831 831 HOH TIP . I 5 HOH A 122 832 832 HOH TIP . I 5 HOH A 123 833 833 HOH TIP . I 5 HOH A 124 835 835 HOH TIP . I 5 HOH A 125 836 836 HOH TIP . I 5 HOH A 126 838 838 HOH TIP . I 5 HOH A 127 839 839 HOH TIP . I 5 HOH A 128 840 840 HOH TIP . I 5 HOH A 129 841 841 HOH TIP . I 5 HOH A 130 842 842 HOH TIP . I 5 HOH A 131 844 844 HOH TIP . I 5 HOH A 132 845 845 HOH TIP . J 5 HOH B 1 601 601 HOH TIP . J 5 HOH B 2 604 604 HOH TIP . J 5 HOH B 3 606 606 HOH TIP . J 5 HOH B 4 609 609 HOH TIP . J 5 HOH B 5 611 611 HOH TIP . J 5 HOH B 6 613 613 HOH TIP . J 5 HOH B 7 616 616 HOH TIP . J 5 HOH B 8 618 618 HOH TIP . J 5 HOH B 9 619 619 HOH TIP . J 5 HOH B 10 622 622 HOH TIP . J 5 HOH B 11 623 623 HOH TIP . J 5 HOH B 12 625 625 HOH TIP . J 5 HOH B 13 626 626 HOH TIP . J 5 HOH B 14 629 629 HOH TIP . J 5 HOH B 15 630 630 HOH TIP . J 5 HOH B 16 633 633 HOH TIP . J 5 HOH B 17 635 635 HOH TIP . J 5 HOH B 18 636 636 HOH TIP . J 5 HOH B 19 637 637 HOH TIP . J 5 HOH B 20 638 638 HOH TIP . J 5 HOH B 21 639 639 HOH TIP . J 5 HOH B 22 640 640 HOH TIP . J 5 HOH B 23 641 641 HOH TIP . J 5 HOH B 24 642 642 HOH TIP . J 5 HOH B 25 645 645 HOH TIP . J 5 HOH B 26 647 647 HOH TIP . J 5 HOH B 27 648 648 HOH TIP . J 5 HOH B 28 650 650 HOH TIP . J 5 HOH B 29 651 651 HOH TIP . J 5 HOH B 30 653 653 HOH TIP . J 5 HOH B 31 654 654 HOH TIP . J 5 HOH B 32 655 655 HOH TIP . J 5 HOH B 33 656 656 HOH TIP . J 5 HOH B 34 657 657 HOH TIP . J 5 HOH B 35 659 659 HOH TIP . J 5 HOH B 36 662 662 HOH TIP . J 5 HOH B 37 664 664 HOH TIP . J 5 HOH B 38 665 665 HOH TIP . J 5 HOH B 39 671 671 HOH TIP . J 5 HOH B 40 673 673 HOH TIP . J 5 HOH B 41 675 675 HOH TIP . J 5 HOH B 42 677 677 HOH TIP . J 5 HOH B 43 680 680 HOH TIP . J 5 HOH B 44 683 683 HOH TIP . J 5 HOH B 45 688 688 HOH TIP . J 5 HOH B 46 689 689 HOH TIP . J 5 HOH B 47 694 694 HOH TIP . J 5 HOH B 48 695 695 HOH TIP . J 5 HOH B 49 697 697 HOH TIP . J 5 HOH B 50 704 704 HOH TIP . J 5 HOH B 51 709 709 HOH TIP . J 5 HOH B 52 710 710 HOH TIP . J 5 HOH B 53 712 712 HOH TIP . J 5 HOH B 54 713 713 HOH TIP . J 5 HOH B 55 715 715 HOH TIP . J 5 HOH B 56 716 716 HOH TIP . J 5 HOH B 57 717 717 HOH TIP . J 5 HOH B 58 718 718 HOH TIP . J 5 HOH B 59 719 719 HOH TIP . J 5 HOH B 60 721 721 HOH TIP . J 5 HOH B 61 723 723 HOH TIP . J 5 HOH B 62 724 724 HOH TIP . J 5 HOH B 63 726 726 HOH TIP . J 5 HOH B 64 727 727 HOH TIP . J 5 HOH B 65 732 732 HOH TIP . J 5 HOH B 66 733 733 HOH TIP . J 5 HOH B 67 738 738 HOH TIP . J 5 HOH B 68 740 740 HOH TIP . J 5 HOH B 69 743 743 HOH TIP . J 5 HOH B 70 744 744 HOH TIP . J 5 HOH B 71 745 745 HOH TIP . J 5 HOH B 72 748 748 HOH TIP . J 5 HOH B 73 753 753 HOH TIP . J 5 HOH B 74 754 754 HOH TIP . J 5 HOH B 75 755 755 HOH TIP . J 5 HOH B 76 756 756 HOH TIP . J 5 HOH B 77 757 757 HOH TIP . J 5 HOH B 78 758 758 HOH TIP . J 5 HOH B 79 761 761 HOH TIP . J 5 HOH B 80 762 762 HOH TIP . J 5 HOH B 81 763 763 HOH TIP . J 5 HOH B 82 764 764 HOH TIP . J 5 HOH B 83 765 765 HOH TIP . J 5 HOH B 84 766 766 HOH TIP . J 5 HOH B 85 767 767 HOH TIP . J 5 HOH B 86 775 775 HOH TIP . J 5 HOH B 87 778 778 HOH TIP . J 5 HOH B 88 788 788 HOH TIP . J 5 HOH B 89 789 789 HOH TIP . J 5 HOH B 90 791 791 HOH TIP . J 5 HOH B 91 793 793 HOH TIP . J 5 HOH B 92 794 794 HOH TIP . J 5 HOH B 93 797 797 HOH TIP . J 5 HOH B 94 798 798 HOH TIP . J 5 HOH B 95 799 799 HOH TIP . J 5 HOH B 96 801 801 HOH TIP . J 5 HOH B 97 802 802 HOH TIP . J 5 HOH B 98 806 806 HOH TIP . J 5 HOH B 99 807 807 HOH TIP . J 5 HOH B 100 811 811 HOH TIP . J 5 HOH B 101 812 812 HOH TIP . J 5 HOH B 102 813 813 HOH TIP . J 5 HOH B 103 817 817 HOH TIP . J 5 HOH B 104 818 818 HOH TIP . J 5 HOH B 105 820 820 HOH TIP . J 5 HOH B 106 821 821 HOH TIP . J 5 HOH B 107 823 823 HOH TIP . J 5 HOH B 108 824 824 HOH TIP . J 5 HOH B 109 828 828 HOH TIP . J 5 HOH B 110 829 829 HOH TIP . J 5 HOH B 111 834 834 HOH TIP . J 5 HOH B 112 837 837 HOH TIP . J 5 HOH B 113 843 843 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -6.193 _atom_site.Cartn_y 14.566 _atom_site.Cartn_z 20.139 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.26 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #