data_1U43 # _model_server_result.job_id ujhQLejIiifYNiw9_oIl1w _model_server_result.datetime_utc '2024-11-24 15:28:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u43 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":669}' # _entry.id 1U43 # _exptl.entry_id 1U43 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 601.287 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL 2-PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1U43 _cell.length_a 145.01 _cell.length_b 145.01 _cell.length_c 145.01 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U43 _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H26 N3 O17 P3' _chem_comp.formula_weight 601.287 _chem_comp.id SUD _chem_comp.mon_nstd_flag . _chem_comp.name '4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL 2-PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O2B SUD sing 288 n n C1 C27 SUD sing 289 n n C1 H11 SUD sing 290 n n C1 H12 SUD sing 291 n n N1 C3 SUD sing 292 n n N1 C6 SUD sing 293 n n N1 C1' SUD sing 294 n n C3 N3 SUD sing 295 n n C3 O8 SUD doub 296 n n N3 C4 SUD doub 297 n n C4 C5 SUD sing 298 n n C4 N4 SUD sing 299 n n C5 C6 SUD doub 300 n n C5 H5 SUD sing 301 n n C6 H6 SUD sing 302 n n N4 HN41 SUD sing 303 n n N4 HN42 SUD sing 304 n n C1' C2' SUD sing 305 n n C1' O4' SUD sing 306 n n C1' H1' SUD sing 307 n n C2' O2' SUD sing 308 n n C2' C3' SUD sing 309 n n C2' H2' SUD sing 310 n n O2' H1 SUD sing 311 n n C3' C4' SUD sing 312 n n C3' O3' SUD sing 313 n n C3' H3' SUD sing 314 n n C4' O4' SUD sing 315 n n C4' C5' SUD sing 316 n n C4' H4' SUD sing 317 n n O3' H2 SUD sing 318 n n C5' O5' SUD sing 319 n n C5' "H5'1" SUD sing 320 n n C5' "H5'2" SUD sing 321 n n O5' PA SUD sing 322 n n PA O1A SUD doub 323 n n PA O2A SUD sing 324 n n PA O3A SUD sing 325 n n O2A H2A SUD sing 326 n n O3A PB SUD sing 327 n n PB O1B SUD doub 328 n n PB O2B SUD sing 329 n n PB O3B SUD sing 330 n n O3B H3B SUD sing 331 n n C27 C28 SUD sing 332 n n C27 O33 SUD sing 333 n n C27 H27 SUD sing 334 n n C28 C29 SUD sing 335 n n C28 O31 SUD sing 336 n n C28 C32 SUD sing 337 n n C29 O30 SUD sing 338 n n C29 H291 SUD sing 339 n n C29 H292 SUD sing 340 n n O30 H30 SUD sing 341 n n O31 P34 SUD sing 342 n n C32 H321 SUD sing 343 n n C32 H322 SUD sing 344 n n C32 H323 SUD sing 345 n n O33 H33 SUD sing 346 n n P34 O35 SUD doub 347 n n P34 O36 SUD sing 348 n n P34 O37 SUD sing 349 n n O36 H36 SUD sing 350 n n O37 H37 SUD sing 351 n n # _atom_sites.entry_id 1U43 _atom_sites.fract_transf_matrix[1][1] 0.006896 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006896 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006896 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id SUD _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 669 _pdbx_nonpoly_scheme.auth_seq_num 669 _pdbx_nonpoly_scheme.pdb_mon_id SUD _pdbx_nonpoly_scheme.auth_mon_id SUB _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SUD . . . B 2 15.34 31.891 7.391 1 74.93 ? C1 SUD 669 A 1 HETATM 2 N N1 SUD . . . B 2 8.304 30.677 12.872 1 38.48 ? N1 SUD 669 A 1 HETATM 3 C C3 SUD . . . B 2 7.128 30.659 13.518 1 39.06 ? C3 SUD 669 A 1 HETATM 4 N N3 SUD . . . B 2 6.539 29.463 13.742 1 37.65 ? N3 SUD 669 A 1 HETATM 5 C C4 SUD . . . B 2 7.089 28.308 13.346 1 35.64 ? C4 SUD 669 A 1 HETATM 6 C C5 SUD . . . B 2 8.373 28.334 12.649 1 35.87 ? C5 SUD 669 A 1 HETATM 7 C C6 SUD . . . B 2 8.915 29.536 12.448 1 36.88 ? C6 SUD 669 A 1 HETATM 8 O O8 SUD . . . B 2 6.588 31.683 13.897 1 41.17 ? O8 SUD 669 A 1 HETATM 9 N N4 SUD . . . B 2 6.443 27.184 13.602 1 35.03 ? N4 SUD 669 A 1 HETATM 10 C C1' SUD . . . B 2 8.973 31.938 12.581 1 41.48 ? C1' SUD 669 A 1 HETATM 11 C C2' SUD . . . B 2 10.391 32.059 13.119 1 45.38 ? C2' SUD 669 A 1 HETATM 12 O O2' SUD . . . B 2 10.443 33.21 13.96 1 50.9 ? O2' SUD 669 A 1 HETATM 13 C C3' SUD . . . B 2 11.289 32.225 11.915 1 46.79 ? C3' SUD 669 A 1 HETATM 14 C C4' SUD . . . B 2 10.327 32.395 10.726 1 47.46 ? C4' SUD 669 A 1 HETATM 15 O O4' SUD . . . B 2 9.031 32.027 11.175 1 42.46 ? O4' SUD 669 A 1 HETATM 16 O O3' SUD . . . B 2 12.094 33.392 12.014 1 50.66 ? O3' SUD 669 A 1 HETATM 17 C C5' SUD . . . B 2 10.776 31.528 9.522 1 54.42 ? C5' SUD 669 A 1 HETATM 18 O O5' SUD . . . B 2 11.261 30.192 9.833 1 64.66 ? O5' SUD 669 A 1 HETATM 19 P PA SUD . . . B 2 11.798 29.171 8.682 1 72.84 ? PA SUD 669 A 1 HETATM 20 O O1A SUD . . . B 2 10.953 27.812 8.619 1 72.89 ? O1A SUD 669 A 1 HETATM 21 O O2A SUD . . . B 2 11.692 29.875 7.234 1 74.36 ? O2A SUD 669 A 1 HETATM 22 O O3A SUD . . . B 2 13.35 28.818 8.921 1 76.33 ? O3A SUD 669 A 1 HETATM 23 P PB SUD . . . B 2 14.302 30.124 9.081 1 79.15 ? PB SUD 669 A 1 HETATM 24 O O1B SUD . . . B 2 13.878 30.945 10.405 1 77.17 ? O1B SUD 669 A 1 HETATM 25 O O2B SUD . . . B 2 14.213 31.139 7.845 1 75.99 ? O2B SUD 669 A 1 HETATM 26 O O3B SUD . . . B 2 15.818 29.616 9.281 1 79.82 ? O3B SUD 669 A 1 HETATM 27 C C27 SUD . . . B 2 14.904 32.785 6.218 1 72.53 ? C27 SUD 669 A 1 HETATM 28 C C28 SUD . . . B 2 16.044 33.087 5.203 1 72.4 ? C28 SUD 669 A 1 HETATM 29 C C29 SUD . . . B 2 15.466 34.005 4.075 1 70.17 ? C29 SUD 669 A 1 HETATM 30 O O30 SUD . . . B 2 16.494 34.337 3.123 1 69.39 ? O30 SUD 669 A 1 HETATM 31 O O31 SUD . . . B 2 16.556 31.819 4.642 1 71.2 ? O31 SUD 669 A 1 HETATM 32 C C32 SUD . . . B 2 17.26 33.799 5.852 1 69.44 ? C32 SUD 669 A 1 HETATM 33 O O33 SUD . . . B 2 14.421 34.031 6.748 1 74.76 ? O33 SUD 669 A 1 HETATM 34 P P34 SUD . . . B 2 15.861 30.548 3.847 1 70.95 ? P34 SUD 669 A 1 HETATM 35 O O35 SUD . . . B 2 15.223 30.977 2.582 1 69.4 ? O35 SUD 669 A 1 HETATM 36 O O36 SUD . . . B 2 16.923 29.547 3.505 1 69.83 ? O36 SUD 669 A 1 HETATM 37 O O37 SUD . . . B 2 14.831 29.854 4.713 1 69.79 ? O37 SUD 669 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 37 #