data_1U4D
#
_model_server_result.job_id            2rna1p68W2BoXC2VhNnqrw 
_model_server_result.datetime_utc      '2024-12-01 07:18:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1u4d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":398}' 
#
_entry.id    1U4D 
#
_exptl.entry_id    1U4D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              245.237 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DEBROMOHYMENIALDISINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.02 
_cell.angle_gamma         90 
_cell.entry_id            1U4D 
_cell.length_a            81.552 
_cell.length_b            42.918 
_cell.length_c            85.149 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1U4D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C11 H11 N5 O2' 
_chem_comp.formula_weight    245.237 
_chem_comp.id                DBQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DEBROMOHYMENIALDISINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C5 DBQ doub 83 n n 
C5 N2 DBQ sing 84 n n 
C5 C4 DBQ sing 85 n n 
N2 C6 DBQ sing 86 n n 
N2 HN2 DBQ sing 87 n n 
C6 C7 DBQ sing 88 n n 
C6 H61 DBQ sing 89 n n 
C6 H62 DBQ sing 90 n n 
C7 C8 DBQ sing 91 n n 
C7 H71 DBQ sing 92 n n 
C7 H72 DBQ sing 93 n n 
C4 N1 DBQ sing 94 n y 
C4 C3 DBQ doub 95 n y 
N1 C1 DBQ sing 96 n y 
N1 HN1 DBQ sing 97 n n 
C1 C2 DBQ doub 98 n y 
C1 H1 DBQ sing 99 n n 
C2 C3 DBQ sing 100 n y 
C2 H2 DBQ sing 101 n n 
C3 C8 DBQ sing 102 n n 
C8 C9 DBQ doub 103 z n 
C9 N4 DBQ sing 104 n n 
C9 C10 DBQ sing 105 n n 
N4 C11 DBQ doub 106 n n 
C11 N5 DBQ sing 107 n n 
C11 N3 DBQ sing 108 n n 
N5 HN51 DBQ sing 109 n n 
N5 HN52 DBQ sing 110 n n 
N3 C10 DBQ sing 111 n n 
N3 HN3 DBQ sing 112 n n 
C10 O2 DBQ doub 113 n n 
#
_atom_sites.entry_id                     1U4D 
_atom_sites.fract_transf_matrix[1][1]    0.012262 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004959 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0233 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012668 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DBQ A 1 398 1 DBQ DBH . 
D 3 CL B 1 502 2 CL CL . 
E 2 DBQ B 1 401 1 DBQ DBH . 
F 4 HOH A 1 399 5 HOH HOH . 
F 4 HOH A 2 400 11 HOH HOH . 
F 4 HOH A 3 401 13 HOH HOH . 
F 4 HOH A 4 402 14 HOH HOH . 
F 4 HOH A 5 403 16 HOH HOH . 
F 4 HOH A 6 404 17 HOH HOH . 
F 4 HOH A 7 405 22 HOH HOH . 
F 4 HOH A 8 406 26 HOH HOH . 
F 4 HOH A 9 407 30 HOH HOH . 
F 4 HOH A 10 408 31 HOH HOH . 
F 4 HOH A 11 409 34 HOH HOH . 
F 4 HOH A 12 410 35 HOH HOH . 
F 4 HOH A 13 411 36 HOH HOH . 
F 4 HOH A 14 412 40 HOH HOH . 
F 4 HOH A 15 413 42 HOH HOH . 
F 4 HOH A 16 414 43 HOH HOH . 
F 4 HOH A 17 415 44 HOH HOH . 
F 4 HOH A 18 416 53 HOH HOH . 
F 4 HOH A 19 417 56 HOH HOH . 
F 4 HOH A 20 418 58 HOH HOH . 
F 4 HOH A 21 419 60 HOH HOH . 
F 4 HOH A 22 420 62 HOH HOH . 
F 4 HOH A 23 421 63 HOH HOH . 
F 4 HOH A 24 422 73 HOH HOH . 
F 4 HOH A 25 423 74 HOH HOH . 
F 4 HOH A 26 424 78 HOH HOH . 
F 4 HOH A 27 425 82 HOH HOH . 
F 4 HOH A 28 426 84 HOH HOH . 
F 4 HOH A 29 427 91 HOH HOH . 
F 4 HOH A 30 428 98 HOH HOH . 
F 4 HOH A 31 429 110 HOH HOH . 
F 4 HOH A 32 430 111 HOH HOH . 
F 4 HOH A 33 431 115 HOH HOH . 
F 4 HOH A 34 432 123 HOH HOH . 
F 4 HOH A 35 433 131 HOH HOH . 
F 4 HOH A 36 434 132 HOH HOH . 
F 4 HOH A 37 435 133 HOH HOH . 
F 4 HOH A 38 436 134 HOH HOH . 
F 4 HOH A 39 437 136 HOH HOH . 
F 4 HOH A 40 438 137 HOH HOH . 
F 4 HOH A 41 439 138 HOH HOH . 
F 4 HOH A 42 440 139 HOH HOH . 
F 4 HOH A 43 441 144 HOH HOH . 
F 4 HOH A 44 442 147 HOH HOH . 
F 4 HOH A 45 443 152 HOH HOH . 
F 4 HOH A 46 444 153 HOH HOH . 
F 4 HOH A 47 445 162 HOH HOH . 
F 4 HOH A 48 446 165 HOH HOH . 
F 4 HOH A 49 447 168 HOH HOH . 
F 4 HOH A 50 448 189 HOH HOH . 
F 4 HOH A 51 449 193 HOH HOH . 
F 4 HOH A 52 450 196 HOH HOH . 
F 4 HOH A 53 451 197 HOH HOH . 
G 4 HOH B 1 503 1 HOH HOH . 
G 4 HOH B 2 504 2 HOH HOH . 
G 4 HOH B 3 505 3 HOH HOH . 
G 4 HOH B 4 506 4 HOH HOH . 
G 4 HOH B 5 507 6 HOH HOH . 
G 4 HOH B 6 508 7 HOH HOH . 
G 4 HOH B 7 509 8 HOH HOH . 
G 4 HOH B 8 510 9 HOH HOH . 
G 4 HOH B 9 511 10 HOH HOH . 
G 4 HOH B 10 512 12 HOH HOH . 
G 4 HOH B 11 513 15 HOH HOH . 
G 4 HOH B 12 514 18 HOH HOH . 
G 4 HOH B 13 515 19 HOH HOH . 
G 4 HOH B 14 516 20 HOH HOH . 
G 4 HOH B 15 517 21 HOH HOH . 
G 4 HOH B 16 518 23 HOH HOH . 
G 4 HOH B 17 519 25 HOH HOH . 
G 4 HOH B 18 520 27 HOH HOH . 
G 4 HOH B 19 521 28 HOH HOH . 
G 4 HOH B 20 522 29 HOH HOH . 
G 4 HOH B 21 523 32 HOH HOH . 
G 4 HOH B 22 524 33 HOH HOH . 
G 4 HOH B 23 525 37 HOH HOH . 
G 4 HOH B 24 526 38 HOH HOH . 
G 4 HOH B 25 527 39 HOH HOH . 
G 4 HOH B 26 528 41 HOH HOH . 
G 4 HOH B 27 529 45 HOH HOH . 
G 4 HOH B 28 530 46 HOH HOH . 
G 4 HOH B 29 531 47 HOH HOH . 
G 4 HOH B 30 532 48 HOH HOH . 
G 4 HOH B 31 533 49 HOH HOH . 
G 4 HOH B 32 534 50 HOH HOH . 
G 4 HOH B 33 535 51 HOH HOH . 
G 4 HOH B 34 536 52 HOH HOH . 
G 4 HOH B 35 537 54 HOH HOH . 
G 4 HOH B 36 538 55 HOH HOH . 
G 4 HOH B 37 539 57 HOH HOH . 
G 4 HOH B 38 540 59 HOH HOH . 
G 4 HOH B 39 541 61 HOH HOH . 
G 4 HOH B 40 542 64 HOH HOH . 
G 4 HOH B 41 543 65 HOH HOH . 
G 4 HOH B 42 544 69 HOH HOH . 
G 4 HOH B 43 545 70 HOH HOH . 
G 4 HOH B 44 546 71 HOH HOH . 
G 4 HOH B 45 547 72 HOH HOH . 
G 4 HOH B 46 548 75 HOH HOH . 
G 4 HOH B 47 549 76 HOH HOH . 
G 4 HOH B 48 550 77 HOH HOH . 
G 4 HOH B 49 551 79 HOH HOH . 
G 4 HOH B 50 552 80 HOH HOH . 
G 4 HOH B 51 553 83 HOH HOH . 
G 4 HOH B 52 554 85 HOH HOH . 
G 4 HOH B 53 555 87 HOH HOH . 
G 4 HOH B 54 556 89 HOH HOH . 
G 4 HOH B 55 557 90 HOH HOH . 
G 4 HOH B 56 558 92 HOH HOH . 
G 4 HOH B 57 559 93 HOH HOH . 
G 4 HOH B 58 560 95 HOH HOH . 
G 4 HOH B 59 561 96 HOH HOH . 
G 4 HOH B 60 562 97 HOH HOH . 
G 4 HOH B 61 563 100 HOH HOH . 
G 4 HOH B 62 564 101 HOH HOH . 
G 4 HOH B 63 565 102 HOH HOH . 
G 4 HOH B 64 566 105 HOH HOH . 
G 4 HOH B 65 567 106 HOH HOH . 
G 4 HOH B 66 568 107 HOH HOH . 
G 4 HOH B 67 569 108 HOH HOH . 
G 4 HOH B 68 570 109 HOH HOH . 
G 4 HOH B 69 571 112 HOH HOH . 
G 4 HOH B 70 572 114 HOH HOH . 
G 4 HOH B 71 573 117 HOH HOH . 
G 4 HOH B 72 574 118 HOH HOH . 
G 4 HOH B 73 575 119 HOH HOH . 
G 4 HOH B 74 576 120 HOH HOH . 
G 4 HOH B 75 577 121 HOH HOH . 
G 4 HOH B 76 578 124 HOH HOH . 
G 4 HOH B 77 579 125 HOH HOH . 
G 4 HOH B 78 580 127 HOH HOH . 
G 4 HOH B 79 581 130 HOH HOH . 
G 4 HOH B 80 582 135 HOH HOH . 
G 4 HOH B 81 583 140 HOH HOH . 
G 4 HOH B 82 584 148 HOH HOH . 
G 4 HOH B 83 585 149 HOH HOH . 
G 4 HOH B 84 586 150 HOH HOH . 
G 4 HOH B 85 587 155 HOH HOH . 
G 4 HOH B 86 588 160 HOH HOH . 
G 4 HOH B 87 589 161 HOH HOH . 
G 4 HOH B 88 590 163 HOH HOH . 
G 4 HOH B 89 591 164 HOH HOH . 
G 4 HOH B 90 592 166 HOH HOH . 
G 4 HOH B 91 593 169 HOH HOH . 
G 4 HOH B 92 594 171 HOH HOH . 
G 4 HOH B 93 595 174 HOH HOH . 
G 4 HOH B 94 596 175 HOH HOH . 
G 4 HOH B 95 597 179 HOH HOH . 
G 4 HOH B 96 598 180 HOH HOH . 
G 4 HOH B 97 599 181 HOH HOH . 
G 4 HOH B 98 600 182 HOH HOH . 
G 4 HOH B 99 601 186 HOH HOH . 
G 4 HOH B 100 602 187 HOH HOH . 
G 4 HOH B 101 603 188 HOH HOH . 
G 4 HOH B 102 604 192 HOH HOH . 
G 4 HOH B 103 605 200 HOH HOH . 
G 4 HOH B 104 606 201 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 DBQ . . . C 2 20.809 18.697 56.837 1 33.33 ? O1 DBQ 398 A 1 
HETATM 2 C C5 DBQ . . . C 2 21.122 17.507 56.627 1 36 ? C5 DBQ 398 A 1 
HETATM 3 N N2 DBQ . . . C 2 20.146 16.592 56.684 1 33.89 ? N2 DBQ 398 A 1 
HETATM 4 C C6 DBQ . . . C 2 20.31 15.162 56.727 1 34.58 ? C6 DBQ 398 A 1 
HETATM 5 C C7 DBQ . . . C 2 21.134 14.647 55.554 1 36.56 ? C7 DBQ 398 A 1 
HETATM 6 C C4 DBQ . . . C 2 22.566 17.192 56.403 1 38.1 ? C4 DBQ 398 A 1 
HETATM 7 N N1 DBQ . . . C 2 23.485 18.185 56.446 1 37.53 ? N1 DBQ 398 A 1 
HETATM 8 C C1 DBQ . . . C 2 24.671 17.734 56.258 1 38.89 ? C1 DBQ 398 A 1 
HETATM 9 C C2 DBQ . . . C 2 24.678 16.242 56.028 1 37.14 ? C2 DBQ 398 A 1 
HETATM 10 C C3 DBQ . . . C 2 23.192 16.01 56.166 1 37.03 ? C3 DBQ 398 A 1 
HETATM 11 C C8 DBQ . . . C 2 22.577 14.688 55.987 1 36.34 ? C8 DBQ 398 A 1 
HETATM 12 C C9 DBQ . . . C 2 23.358 13.431 56.207 1 39.48 ? C9 DBQ 398 A 1 
HETATM 13 N N4 DBQ . . . C 2 24.653 13.256 56.577 1 40.08 ? N4 DBQ 398 A 1 
HETATM 14 C C11 DBQ . . . C 2 24.839 11.908 56.624 1 42.54 ? C11 DBQ 398 A 1 
HETATM 15 N N5 DBQ . . . C 2 26.018 11.323 56.966 1 42.12 ? N5 DBQ 398 A 1 
HETATM 16 N N3 DBQ . . . C 2 23.799 11.137 56.271 1 43.23 ? N3 DBQ 398 A 1 
HETATM 17 C C10 DBQ . . . C 2 22.878 12.032 56.015 1 40.57 ? C10 DBQ 398 A 1 
HETATM 18 O O2 DBQ . . . C 2 21.739 11.666 55.659 1 42.13 ? O2 DBQ 398 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           18 
#