data_1U4H # _model_server_result.job_id 7Wwz5oZgu5xuN7HAb7P4Tw _model_server_result.datetime_utc '2024-11-25 16:22:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u4h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":503}' # _entry.id 1U4H # _exptl.entry_id 1U4H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 31.999 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXYGEN MOLECULE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1U4H _cell.length_a 80.119 _cell.length_b 128.951 _cell.length_c 43.093 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U4H _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,L 1 1 B,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N LYS 2 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C LEU 95 A LEU 95 1_555 A N MSE 96 A MSE 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C MSE 96 A MSE 96 1_555 A N MSE 97 A MSE 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 A C MSE 97 A MSE 97 1_555 A N MSE 98 A MSE 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C MSE 98 A MSE 98 1_555 A N ASP 99 A ASP 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C LYS 107 A LYS 107 1_555 A N MSE 108 A MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 A C MSE 108 A MSE 108 1_555 A N ILE 109 A ILE 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C GLU 128 A GLU 128 1_555 A N MSE 129 A MSE 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale9 A C MSE 129 A MSE 129 1_555 A N GLU 130 A GLU 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 A C LYS 136 A LYS 136 1_555 A N MSE 137 A MSE 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale11 A C MSE 137 A MSE 137 1_555 A N TYR 138 A TYR 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 B C MSE 1 B MSE 1 1_555 B N LYS 2 B LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale13 B C LEU 95 B LEU 95 1_555 B N MSE 96 B MSE 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 B C MSE 96 B MSE 96 1_555 B N MSE 97 B MSE 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale15 B C MSE 97 B MSE 97 1_555 B N MSE 98 B MSE 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale16 B C MSE 98 B MSE 98 1_555 B N ASP 99 B ASP 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale17 B C LYS 107 B LYS 107 1_555 B N MSE 108 B MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale18 B C MSE 108 B MSE 108 1_555 B N ILE 109 B ILE 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale19 B C GLU 128 B GLU 128 1_555 B N MSE 129 B MSE 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale20 B C MSE 129 B MSE 129 1_555 B N GLU 130 B GLU 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale21 B C LYS 136 B LYS 136 1_555 B N MSE 137 B MSE 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale22 B C MSE 137 B MSE 137 1_555 B N TYR 138 B TYR 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A NE2 HIS 102 A HIS 102 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc2 C FE HEM . A HEM 500 1_555 D O1 OXY . A OXY 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? metalc ? metalc3 C FE HEM . A HEM 500 1_555 D O2 OXY . A OXY 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? metalc ? metalc4 B NE2 HIS 102 B HIS 102 1_555 I FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc5 I FE HEM . B HEM 502 1_555 J O1 OXY . B OXY 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? metalc ? metalc6 I FE HEM . B HEM 502 1_555 J O2 OXY . B OXY 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? # _chem_comp.formula O2 _chem_comp.formula_weight 31.999 _chem_comp.id OXY _chem_comp.mon_nstd_flag . _chem_comp.name 'OXYGEN MOLECULE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 O1 _chem_comp_bond.atom_id_2 O2 _chem_comp_bond.comp_id OXY _chem_comp_bond.value_order doub _chem_comp_bond.pdbx_ordinal 338 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 1U4H _atom_sites.fract_transf_matrix[1][1] 0.012481 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007755 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023206 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 500 500 HEM HEM . D 3 OXY A 1 501 501 OXY O2 . E 4 GOL A 1 193 193 GOL GOL . F 4 GOL A 1 194 194 GOL GOL . G 4 GOL A 1 195 195 GOL GOL . H 5 SCN B 1 197 197 SCN SCN . I 2 HEM B 1 502 502 HEM HEM . J 3 OXY B 1 503 503 OXY O2 . K 4 GOL B 1 196 196 GOL GOL . L 6 HOH A 1 502 3 HOH HOH . L 6 HOH A 2 503 5 HOH HOH . L 6 HOH A 3 504 6 HOH HOH . L 6 HOH A 4 505 7 HOH HOH . L 6 HOH A 5 506 10 HOH HOH . L 6 HOH A 6 507 13 HOH HOH . L 6 HOH A 7 508 18 HOH HOH . L 6 HOH A 8 509 21 HOH HOH . L 6 HOH A 9 510 23 HOH HOH . L 6 HOH A 10 511 24 HOH HOH . L 6 HOH A 11 512 25 HOH HOH . L 6 HOH A 12 513 27 HOH HOH . L 6 HOH A 13 514 29 HOH HOH . L 6 HOH A 14 515 30 HOH HOH . L 6 HOH A 15 516 31 HOH HOH . L 6 HOH A 16 517 32 HOH HOH . L 6 HOH A 17 518 33 HOH HOH . L 6 HOH A 18 519 34 HOH HOH . L 6 HOH A 19 520 36 HOH HOH . L 6 HOH A 20 521 37 HOH HOH . L 6 HOH A 21 522 40 HOH HOH . L 6 HOH A 22 523 41 HOH HOH . L 6 HOH A 23 524 49 HOH HOH . L 6 HOH A 24 525 50 HOH HOH . L 6 HOH A 25 526 51 HOH HOH . L 6 HOH A 26 527 53 HOH HOH . L 6 HOH A 27 528 55 HOH HOH . L 6 HOH A 28 529 56 HOH HOH . L 6 HOH A 29 530 62 HOH HOH . L 6 HOH A 30 531 63 HOH HOH . L 6 HOH A 31 532 65 HOH HOH . L 6 HOH A 32 533 67 HOH HOH . L 6 HOH A 33 534 71 HOH HOH . L 6 HOH A 34 535 72 HOH HOH . L 6 HOH A 35 536 74 HOH HOH . L 6 HOH A 36 537 77 HOH HOH . L 6 HOH A 37 538 78 HOH HOH . L 6 HOH A 38 539 79 HOH HOH . L 6 HOH A 39 540 82 HOH HOH . L 6 HOH A 40 541 83 HOH HOH . L 6 HOH A 41 542 84 HOH HOH . L 6 HOH A 42 543 87 HOH HOH . L 6 HOH A 43 544 88 HOH HOH . L 6 HOH A 44 545 93 HOH HOH . L 6 HOH A 45 546 96 HOH HOH . L 6 HOH A 46 547 97 HOH HOH . L 6 HOH A 47 548 99 HOH HOH . L 6 HOH A 48 549 100 HOH HOH . L 6 HOH A 49 550 102 HOH HOH . L 6 HOH A 50 551 106 HOH HOH . L 6 HOH A 51 552 107 HOH HOH . L 6 HOH A 52 553 108 HOH HOH . L 6 HOH A 53 554 110 HOH HOH . L 6 HOH A 54 555 115 HOH HOH . L 6 HOH A 55 556 116 HOH HOH . L 6 HOH A 56 557 117 HOH HOH . L 6 HOH A 57 558 118 HOH HOH . L 6 HOH A 58 559 119 HOH HOH . L 6 HOH A 59 560 120 HOH HOH . L 6 HOH A 60 561 130 HOH HOH . L 6 HOH A 61 562 131 HOH HOH . L 6 HOH A 62 563 133 HOH HOH . L 6 HOH A 63 564 134 HOH HOH . L 6 HOH A 64 565 135 HOH HOH . L 6 HOH A 65 566 136 HOH HOH . L 6 HOH A 66 567 137 HOH HOH . L 6 HOH A 67 568 138 HOH HOH . L 6 HOH A 68 569 142 HOH HOH . L 6 HOH A 69 570 143 HOH HOH . L 6 HOH A 70 571 144 HOH HOH . L 6 HOH A 71 572 145 HOH HOH . L 6 HOH A 72 573 146 HOH HOH . L 6 HOH A 73 574 148 HOH HOH . L 6 HOH A 74 575 151 HOH HOH . L 6 HOH A 75 576 152 HOH HOH . L 6 HOH A 76 577 153 HOH HOH . L 6 HOH A 77 578 155 HOH HOH . L 6 HOH A 78 579 156 HOH HOH . L 6 HOH A 79 580 157 HOH HOH . L 6 HOH A 80 581 159 HOH HOH . L 6 HOH A 81 582 160 HOH HOH . L 6 HOH A 82 583 162 HOH HOH . L 6 HOH A 83 584 168 HOH HOH . L 6 HOH A 84 585 169 HOH HOH . L 6 HOH A 85 586 170 HOH HOH . L 6 HOH A 86 587 171 HOH HOH . L 6 HOH A 87 588 178 HOH HOH . L 6 HOH A 88 589 184 HOH HOH . L 6 HOH A 89 590 185 HOH HOH . L 6 HOH A 90 591 186 HOH HOH . L 6 HOH A 91 592 188 HOH HOH . L 6 HOH A 92 593 191 HOH HOH . M 6 HOH B 1 504 1 HOH HOH . M 6 HOH B 2 505 2 HOH HOH . M 6 HOH B 3 506 4 HOH HOH . M 6 HOH B 4 507 8 HOH HOH . M 6 HOH B 5 508 9 HOH HOH . M 6 HOH B 6 509 11 HOH HOH . M 6 HOH B 7 510 12 HOH HOH . M 6 HOH B 8 511 14 HOH HOH . M 6 HOH B 9 512 15 HOH HOH . M 6 HOH B 10 513 16 HOH HOH . M 6 HOH B 11 514 17 HOH HOH . M 6 HOH B 12 515 19 HOH HOH . M 6 HOH B 13 516 20 HOH HOH . M 6 HOH B 14 517 22 HOH HOH . M 6 HOH B 15 518 26 HOH HOH . M 6 HOH B 16 519 28 HOH HOH . M 6 HOH B 17 520 35 HOH HOH . M 6 HOH B 18 521 38 HOH HOH . M 6 HOH B 19 522 39 HOH HOH . M 6 HOH B 20 523 42 HOH HOH . M 6 HOH B 21 524 43 HOH HOH . M 6 HOH B 22 525 44 HOH HOH . M 6 HOH B 23 526 45 HOH HOH . M 6 HOH B 24 527 46 HOH HOH . M 6 HOH B 25 528 47 HOH HOH . M 6 HOH B 26 529 48 HOH HOH . M 6 HOH B 27 530 52 HOH HOH . M 6 HOH B 28 531 54 HOH HOH . M 6 HOH B 29 532 57 HOH HOH . M 6 HOH B 30 533 58 HOH HOH . M 6 HOH B 31 534 59 HOH HOH . M 6 HOH B 32 535 60 HOH HOH . M 6 HOH B 33 536 61 HOH HOH . M 6 HOH B 34 537 64 HOH HOH . M 6 HOH B 35 538 66 HOH HOH . M 6 HOH B 36 539 68 HOH HOH . M 6 HOH B 37 540 69 HOH HOH . M 6 HOH B 38 541 70 HOH HOH . M 6 HOH B 39 542 73 HOH HOH . M 6 HOH B 40 543 75 HOH HOH . M 6 HOH B 41 544 76 HOH HOH . M 6 HOH B 42 545 80 HOH HOH . M 6 HOH B 43 546 81 HOH HOH . M 6 HOH B 44 547 85 HOH HOH . M 6 HOH B 45 548 86 HOH HOH . M 6 HOH B 46 549 89 HOH HOH . M 6 HOH B 47 550 90 HOH HOH . M 6 HOH B 48 551 91 HOH HOH . M 6 HOH B 49 552 92 HOH HOH . M 6 HOH B 50 553 94 HOH HOH . M 6 HOH B 51 554 95 HOH HOH . M 6 HOH B 52 555 98 HOH HOH . M 6 HOH B 53 556 101 HOH HOH . M 6 HOH B 54 557 103 HOH HOH . M 6 HOH B 55 558 104 HOH HOH . M 6 HOH B 56 559 105 HOH HOH . M 6 HOH B 57 560 109 HOH HOH . M 6 HOH B 58 561 111 HOH HOH . M 6 HOH B 59 562 112 HOH HOH . M 6 HOH B 60 563 113 HOH HOH . M 6 HOH B 61 564 114 HOH HOH . M 6 HOH B 62 565 121 HOH HOH . M 6 HOH B 63 566 122 HOH HOH . M 6 HOH B 64 567 123 HOH HOH . M 6 HOH B 65 568 124 HOH HOH . M 6 HOH B 66 569 125 HOH HOH . M 6 HOH B 67 570 126 HOH HOH . M 6 HOH B 68 571 127 HOH HOH . M 6 HOH B 69 572 128 HOH HOH . M 6 HOH B 70 573 129 HOH HOH . M 6 HOH B 71 574 132 HOH HOH . M 6 HOH B 72 575 139 HOH HOH . M 6 HOH B 73 576 140 HOH HOH . M 6 HOH B 74 577 141 HOH HOH . M 6 HOH B 75 578 147 HOH HOH . M 6 HOH B 76 579 149 HOH HOH . M 6 HOH B 77 580 150 HOH HOH . M 6 HOH B 78 581 154 HOH HOH . M 6 HOH B 79 582 158 HOH HOH . M 6 HOH B 80 583 161 HOH HOH . M 6 HOH B 81 584 163 HOH HOH . M 6 HOH B 82 585 164 HOH HOH . M 6 HOH B 83 586 165 HOH HOH . M 6 HOH B 84 587 166 HOH HOH . M 6 HOH B 85 588 167 HOH HOH . M 6 HOH B 86 589 172 HOH HOH . M 6 HOH B 87 590 173 HOH HOH . M 6 HOH B 88 591 174 HOH HOH . M 6 HOH B 89 592 175 HOH HOH . M 6 HOH B 90 593 176 HOH HOH . M 6 HOH B 91 594 177 HOH HOH . M 6 HOH B 92 595 179 HOH HOH . M 6 HOH B 93 596 180 HOH HOH . M 6 HOH B 94 597 181 HOH HOH . M 6 HOH B 95 598 182 HOH HOH . M 6 HOH B 96 599 183 HOH HOH . M 6 HOH B 97 600 187 HOH HOH . M 6 HOH B 98 601 189 HOH HOH . M 6 HOH B 99 602 190 HOH HOH . M 6 HOH B 100 603 192 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 OXY . . . J 3 -19.821 18.988 -3.027 1 26.31 ? O1 OXY 503 B 1 HETATM 2 O O2 OXY . . . J 3 -19.162 19.303 -4.098 1 35.89 ? O2 OXY 503 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 2 #