data_1U4J # _model_server_result.job_id upyvlydUPMIvGPs02nJ1PA _model_server_result.datetime_utc '2024-12-27 02:12:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u4j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 1U4J # _exptl.entry_id 1U4J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1U4J _cell.length_a 80.36 _cell.length_b 80.36 _cell.length_c 99.44 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U4J _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 A,C,D,E,F,L 2 1 B,G,H,I,J,K,M 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 -y+2/3,x-y+1/3,z+1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 40.18 23.197934 33.146667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 11 1_555 A SG CYS 70 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 25 A CYS 27 1_555 A SG CYS 117 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 A SG CYS 27 A CYS 29 1_555 A SG CYS 43 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 42 A CYS 44 1_555 A SG CYS 98 A CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 A SG CYS 49 A CYS 51 1_555 A SG CYS 91 A CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 59 A CYS 61 1_555 A SG CYS 84 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 A SG CYS 77 A CYS 79 1_555 A SG CYS 89 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 B SG CYS 11 B CYS 11 1_555 B SG CYS 70 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 B SG CYS 25 B CYS 27 1_555 B SG CYS 117 B CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 B SG CYS 27 B CYS 29 1_555 B SG CYS 43 B CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf11 B SG CYS 42 B CYS 44 1_555 B SG CYS 98 B CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 B SG CYS 49 B CYS 51 1_555 B SG CYS 91 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf13 B SG CYS 59 B CYS 61 1_555 B SG CYS 84 B CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 B SG CYS 77 B CYS 79 1_555 B SG CYS 89 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A O TYR 26 A TYR 28 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc2 A O GLY 28 A GLY 30 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc3 A O GLY 30 A GLY 32 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc4 A OD1 ASP 47 A ASP 49 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc5 B O TYR 26 B TYR 28 1_555 I NA NA . B NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc6 B O GLY 28 B GLY 30 1_555 I NA NA . B NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc7 B O GLY 30 B GLY 32 1_555 I NA NA . B NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc8 B OD1 ASP 47 B ASP 49 1_555 I NA NA . B NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc9 B OD2 ASP 47 B ASP 49 1_555 I NA NA . B NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1U4J _atom_sites.fract_transf_matrix[1][1] 0.012444 _atom_sites.fract_transf_matrix[1][2] 0.007185 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014369 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 1002 2 NA NA . D 3 CL A 1 1004 4 CL CL . E 4 ACY A 1 1005 5 ACY ACY . F 4 ACY A 1 1006 6 ACY ACY . G 5 MAN B 1 1008 8 MAN MAN . H 5 MAN B 1 1009 9 MAN MAN . I 2 NA B 1 1001 1 NA NA . J 3 CL B 1 1003 3 CL CL . K 4 ACY B 1 1007 7 ACY ACY . L 6 HOH A 1 1007 1 HOH HOH . L 6 HOH A 2 1008 2 HOH HOH . L 6 HOH A 3 1009 3 HOH HOH . L 6 HOH A 4 1010 4 HOH HOH . L 6 HOH A 5 1011 5 HOH HOH . L 6 HOH A 6 1012 6 HOH HOH . L 6 HOH A 7 1013 7 HOH HOH . L 6 HOH A 8 1014 8 HOH HOH . L 6 HOH A 9 1015 9 HOH HOH . L 6 HOH A 10 1016 10 HOH HOH . L 6 HOH A 11 1017 12 HOH HOH . L 6 HOH A 12 1018 13 HOH HOH . L 6 HOH A 13 1019 14 HOH HOH . L 6 HOH A 14 1020 29 HOH HOH . L 6 HOH A 15 1021 30 HOH HOH . L 6 HOH A 16 1022 31 HOH HOH . L 6 HOH A 17 1023 32 HOH HOH . L 6 HOH A 18 1024 33 HOH HOH . L 6 HOH A 19 1025 34 HOH HOH . L 6 HOH A 20 1026 35 HOH HOH . L 6 HOH A 21 1027 36 HOH HOH . L 6 HOH A 22 1028 37 HOH HOH . L 6 HOH A 23 1029 38 HOH HOH . L 6 HOH A 24 1030 39 HOH HOH . L 6 HOH A 25 1031 40 HOH HOH . L 6 HOH A 26 1032 41 HOH HOH . L 6 HOH A 27 1033 42 HOH HOH . L 6 HOH A 28 1034 43 HOH HOH . L 6 HOH A 29 1035 44 HOH HOH . L 6 HOH A 30 1036 47 HOH HOH . L 6 HOH A 31 1037 65 HOH HOH . L 6 HOH A 32 1038 66 HOH HOH . L 6 HOH A 33 1039 67 HOH HOH . L 6 HOH A 34 1040 68 HOH HOH . L 6 HOH A 35 1041 69 HOH HOH . L 6 HOH A 36 1042 70 HOH HOH . L 6 HOH A 37 1043 71 HOH HOH . L 6 HOH A 38 1044 72 HOH HOH . L 6 HOH A 39 1045 73 HOH HOH . L 6 HOH A 40 1046 85 HOH HOH . L 6 HOH A 41 1047 86 HOH HOH . L 6 HOH A 42 1048 88 HOH HOH . L 6 HOH A 43 1049 90 HOH HOH . L 6 HOH A 44 1050 91 HOH HOH . L 6 HOH A 45 1051 94 HOH HOH . L 6 HOH A 46 1052 95 HOH HOH . L 6 HOH A 47 1053 103 HOH HOH . L 6 HOH A 48 1054 104 HOH HOH . L 6 HOH A 49 1055 105 HOH HOH . L 6 HOH A 50 1056 106 HOH HOH . L 6 HOH A 51 1057 107 HOH HOH . L 6 HOH A 52 1058 108 HOH HOH . L 6 HOH A 53 1059 109 HOH HOH . L 6 HOH A 54 1060 111 HOH HOH . L 6 HOH A 55 1061 112 HOH HOH . L 6 HOH A 56 1062 113 HOH HOH . L 6 HOH A 57 1063 114 HOH HOH . L 6 HOH A 58 1064 117 HOH HOH . L 6 HOH A 59 1065 119 HOH HOH . L 6 HOH A 60 1066 122 HOH HOH . L 6 HOH A 61 1067 124 HOH HOH . L 6 HOH A 62 1068 127 HOH HOH . L 6 HOH A 63 1069 128 HOH HOH . L 6 HOH A 64 1070 133 HOH HOH . L 6 HOH A 65 1071 140 HOH HOH . L 6 HOH A 66 1072 142 HOH HOH . L 6 HOH A 67 1073 144 HOH HOH . L 6 HOH A 68 1074 146 HOH HOH . L 6 HOH A 69 1075 148 HOH HOH . L 6 HOH A 70 1076 150 HOH HOH . L 6 HOH A 71 1077 151 HOH HOH . L 6 HOH A 72 1078 152 HOH HOH . L 6 HOH A 73 1079 154 HOH HOH . L 6 HOH A 74 1080 156 HOH HOH . L 6 HOH A 75 1081 157 HOH HOH . L 6 HOH A 76 1082 158 HOH HOH . L 6 HOH A 77 1083 159 HOH HOH . L 6 HOH A 78 1084 160 HOH HOH . L 6 HOH A 79 1085 170 HOH HOH . L 6 HOH A 80 1086 171 HOH HOH . L 6 HOH A 81 1087 172 HOH HOH . L 6 HOH A 82 1088 173 HOH HOH . L 6 HOH A 83 1089 175 HOH HOH . L 6 HOH A 84 1090 177 HOH HOH . L 6 HOH A 85 1091 182 HOH HOH . L 6 HOH A 86 1092 183 HOH HOH . L 6 HOH A 87 1093 187 HOH HOH . L 6 HOH A 88 1094 189 HOH HOH . L 6 HOH A 89 1095 190 HOH HOH . L 6 HOH A 90 1096 194 HOH HOH . L 6 HOH A 91 1097 195 HOH HOH . M 6 HOH B 1 1010 11 HOH HOH . M 6 HOH B 2 1011 15 HOH HOH . M 6 HOH B 3 1012 16 HOH HOH . M 6 HOH B 4 1013 17 HOH HOH . M 6 HOH B 5 1014 18 HOH HOH . M 6 HOH B 6 1015 19 HOH HOH . M 6 HOH B 7 1016 20 HOH HOH . M 6 HOH B 8 1017 21 HOH HOH . M 6 HOH B 9 1018 22 HOH HOH . M 6 HOH B 10 1019 23 HOH HOH . M 6 HOH B 11 1020 24 HOH HOH . M 6 HOH B 12 1021 25 HOH HOH . M 6 HOH B 13 1022 26 HOH HOH . M 6 HOH B 14 1023 27 HOH HOH . M 6 HOH B 15 1024 28 HOH HOH . M 6 HOH B 16 1025 45 HOH HOH . M 6 HOH B 17 1026 46 HOH HOH . M 6 HOH B 18 1027 48 HOH HOH . M 6 HOH B 19 1028 49 HOH HOH . M 6 HOH B 20 1029 50 HOH HOH . M 6 HOH B 21 1030 51 HOH HOH . M 6 HOH B 22 1031 52 HOH HOH . M 6 HOH B 23 1032 53 HOH HOH . M 6 HOH B 24 1033 54 HOH HOH . M 6 HOH B 25 1034 55 HOH HOH . M 6 HOH B 26 1035 56 HOH HOH . M 6 HOH B 27 1036 57 HOH HOH . M 6 HOH B 28 1037 58 HOH HOH . M 6 HOH B 29 1038 59 HOH HOH . M 6 HOH B 30 1039 60 HOH HOH . M 6 HOH B 31 1040 61 HOH HOH . M 6 HOH B 32 1041 62 HOH HOH . M 6 HOH B 33 1042 63 HOH HOH . M 6 HOH B 34 1043 64 HOH HOH . M 6 HOH B 35 1044 74 HOH HOH . M 6 HOH B 36 1045 75 HOH HOH . M 6 HOH B 37 1046 76 HOH HOH . M 6 HOH B 38 1047 77 HOH HOH . M 6 HOH B 39 1048 78 HOH HOH . M 6 HOH B 40 1049 79 HOH HOH . M 6 HOH B 41 1050 80 HOH HOH . M 6 HOH B 42 1051 81 HOH HOH . M 6 HOH B 43 1052 82 HOH HOH . M 6 HOH B 44 1053 83 HOH HOH . M 6 HOH B 45 1054 84 HOH HOH . M 6 HOH B 46 1055 87 HOH HOH . M 6 HOH B 47 1056 89 HOH HOH . M 6 HOH B 48 1057 92 HOH HOH . M 6 HOH B 49 1058 93 HOH HOH . M 6 HOH B 50 1059 96 HOH HOH . M 6 HOH B 51 1060 97 HOH HOH . M 6 HOH B 52 1061 98 HOH HOH . M 6 HOH B 53 1062 99 HOH HOH . M 6 HOH B 54 1063 100 HOH HOH . M 6 HOH B 55 1064 101 HOH HOH . M 6 HOH B 56 1065 102 HOH HOH . M 6 HOH B 57 1066 110 HOH HOH . M 6 HOH B 58 1067 115 HOH HOH . M 6 HOH B 59 1068 116 HOH HOH . M 6 HOH B 60 1069 118 HOH HOH . M 6 HOH B 61 1070 120 HOH HOH . M 6 HOH B 62 1071 121 HOH HOH . M 6 HOH B 63 1072 123 HOH HOH . M 6 HOH B 64 1073 125 HOH HOH . M 6 HOH B 65 1074 126 HOH HOH . M 6 HOH B 66 1075 129 HOH HOH . M 6 HOH B 67 1076 130 HOH HOH . M 6 HOH B 68 1077 131 HOH HOH . M 6 HOH B 69 1078 132 HOH HOH . M 6 HOH B 70 1079 134 HOH HOH . M 6 HOH B 71 1080 135 HOH HOH . M 6 HOH B 72 1081 136 HOH HOH . M 6 HOH B 73 1082 137 HOH HOH . M 6 HOH B 74 1083 138 HOH HOH . M 6 HOH B 75 1084 139 HOH HOH . M 6 HOH B 76 1085 141 HOH HOH . M 6 HOH B 77 1086 143 HOH HOH . M 6 HOH B 78 1087 145 HOH HOH . M 6 HOH B 79 1088 147 HOH HOH . M 6 HOH B 80 1089 149 HOH HOH . M 6 HOH B 81 1090 153 HOH HOH . M 6 HOH B 82 1091 155 HOH HOH . M 6 HOH B 83 1092 161 HOH HOH . M 6 HOH B 84 1093 162 HOH HOH . M 6 HOH B 85 1094 163 HOH HOH . M 6 HOH B 86 1095 164 HOH HOH . M 6 HOH B 87 1096 165 HOH HOH . M 6 HOH B 88 1097 166 HOH HOH . M 6 HOH B 89 1098 167 HOH HOH . M 6 HOH B 90 1099 168 HOH HOH . M 6 HOH B 91 1100 169 HOH HOH . M 6 HOH B 92 1101 174 HOH HOH . M 6 HOH B 93 1102 176 HOH HOH . M 6 HOH B 94 1103 178 HOH HOH . M 6 HOH B 95 1104 179 HOH HOH . M 6 HOH B 96 1105 180 HOH HOH . M 6 HOH B 97 1106 181 HOH HOH . M 6 HOH B 98 1107 184 HOH HOH . M 6 HOH B 99 1108 185 HOH HOH . M 6 HOH B 100 1109 186 HOH HOH . M 6 HOH B 101 1110 188 HOH HOH . M 6 HOH B 102 1111 191 HOH HOH . M 6 HOH B 103 1112 192 HOH HOH . M 6 HOH B 104 1113 193 HOH HOH . M 6 HOH B 105 1114 196 HOH HOH . M 6 HOH B 106 1115 197 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 19.994 _atom_site.Cartn_y 30.578 _atom_site.Cartn_z -1.012 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 43.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #