data_1U4L # _model_server_result.job_id AlnqFuJDgRK5x6Vj9I7rIA _model_server_result.datetime_utc '2024-11-22 23:52:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u4l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 1U4L # _exptl.entry_id 1U4L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.052 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1U4L _cell.length_a 24.017 _cell.length_b 56.35 _cell.length_c 94.412 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U4L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 UAP _pdbx_entity_branch_link.comp_id_2 SGN _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C SGN 1 C 1 SGN H 1 H1S 2 n C UAP 2 C 2 UAP H 1 H1S # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 10 1_555 A SG CYS 34 A CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 11 A CYS 11 1_555 A SG CYS 50 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 B SG CYS 10 B CYS 10 1_555 B SG CYS 34 B CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 11 B CYS 11 1_555 B SG CYS 50 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 C O4 SGN . C SGN 1 1_555 C C1 UAP . C UAP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 sing # _chem_comp.formula 'C2 H4 O2' _chem_comp.formula_weight 60.052 _chem_comp.id ACY _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACY doub 1 n n C OXT ACY sing 2 n n C CH3 ACY sing 3 n n OXT HXT ACY sing 4 n n CH3 H1 ACY sing 5 n n CH3 H2 ACY sing 6 n n CH3 H3 ACY sing 7 n n # _atom_sites.entry_id 1U4L _atom_sites.fract_transf_matrix[1][1] 0.041637 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017746 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ACY B 1 201 1 ACY ACY . E 4 HOH A 1 302 1 HOH WAT . E 4 HOH A 2 303 2 HOH WAT . E 4 HOH A 3 304 3 HOH WAT . E 4 HOH A 4 305 5 HOH WAT . E 4 HOH A 5 306 8 HOH WAT . E 4 HOH A 6 307 9 HOH WAT . E 4 HOH A 7 308 10 HOH WAT . E 4 HOH A 8 309 13 HOH WAT . E 4 HOH A 9 310 14 HOH WAT . E 4 HOH A 10 311 17 HOH WAT . E 4 HOH A 11 312 18 HOH WAT . E 4 HOH A 12 313 21 HOH WAT . E 4 HOH A 13 314 28 HOH WAT . E 4 HOH A 14 315 29 HOH WAT . E 4 HOH A 15 316 30 HOH WAT . E 4 HOH A 16 317 34 HOH WAT . E 4 HOH A 17 318 37 HOH WAT . E 4 HOH A 18 319 41 HOH WAT . E 4 HOH A 19 320 42 HOH WAT . E 4 HOH A 20 321 43 HOH WAT . E 4 HOH A 21 322 44 HOH WAT . E 4 HOH A 22 323 45 HOH WAT . E 4 HOH A 23 324 49 HOH WAT . E 4 HOH A 24 325 50 HOH WAT . E 4 HOH A 25 326 51 HOH WAT . E 4 HOH A 26 327 52 HOH WAT . E 4 HOH A 27 328 53 HOH WAT . E 4 HOH A 28 329 54 HOH WAT . E 4 HOH A 29 330 55 HOH WAT . E 4 HOH A 30 331 60 HOH WAT . E 4 HOH A 31 332 62 HOH WAT . E 4 HOH A 32 333 63 HOH WAT . E 4 HOH A 33 334 64 HOH WAT . E 4 HOH A 34 335 66 HOH WAT . E 4 HOH A 35 336 67 HOH WAT . E 4 HOH A 36 337 72 HOH WAT . E 4 HOH A 37 338 73 HOH WAT . E 4 HOH A 38 339 75 HOH WAT . E 4 HOH A 39 340 76 HOH WAT . E 4 HOH A 40 341 79 HOH WAT . E 4 HOH A 41 342 80 HOH WAT . E 4 HOH A 42 343 82 HOH WAT . E 4 HOH A 43 344 84 HOH WAT . E 4 HOH A 44 345 86 HOH WAT . E 4 HOH A 45 346 87 HOH WAT . E 4 HOH A 46 347 89 HOH WAT . E 4 HOH A 47 348 91 HOH WAT . E 4 HOH A 48 349 93 HOH WAT . E 4 HOH A 49 350 95 HOH WAT . E 4 HOH A 50 351 96 HOH WAT . E 4 HOH A 51 352 99 HOH WAT . E 4 HOH A 52 353 103 HOH WAT . E 4 HOH A 53 354 104 HOH WAT . E 4 HOH A 54 355 105 HOH WAT . E 4 HOH A 55 356 110 HOH WAT . E 4 HOH A 56 357 111 HOH WAT . E 4 HOH A 57 358 112 HOH WAT . E 4 HOH A 58 359 113 HOH WAT . E 4 HOH A 59 360 114 HOH WAT . E 4 HOH A 60 361 115 HOH WAT . E 4 HOH A 61 362 120 HOH WAT . E 4 HOH A 62 363 123 HOH WAT . E 4 HOH A 63 364 124 HOH WAT . E 4 HOH A 64 365 126 HOH WAT . E 4 HOH A 65 366 128 HOH WAT . E 4 HOH A 66 367 129 HOH WAT . E 4 HOH A 67 368 131 HOH WAT . E 4 HOH A 68 369 132 HOH WAT . E 4 HOH A 69 370 133 HOH WAT . E 4 HOH A 70 371 135 HOH WAT . E 4 HOH A 71 372 136 HOH WAT . E 4 HOH A 72 373 137 HOH WAT . E 4 HOH A 73 374 140 HOH WAT . E 4 HOH A 74 375 143 HOH WAT . E 4 HOH A 75 376 144 HOH WAT . E 4 HOH A 76 377 145 HOH WAT . E 4 HOH A 77 378 146 HOH WAT . E 4 HOH A 78 379 147 HOH WAT . E 4 HOH A 79 380 148 HOH WAT . E 4 HOH A 80 381 149 HOH WAT . E 4 HOH A 81 382 150 HOH WAT . E 4 HOH A 82 383 151 HOH WAT . E 4 HOH A 83 384 153 HOH WAT . E 4 HOH A 84 385 156 HOH WAT . E 4 HOH A 85 386 157 HOH WAT . E 4 HOH A 86 387 158 HOH WAT . E 4 HOH A 87 388 159 HOH WAT . E 4 HOH A 88 389 160 HOH WAT . E 4 HOH A 89 390 161 HOH WAT . F 4 HOH B 1 202 4 HOH WAT . F 4 HOH B 2 203 6 HOH WAT . F 4 HOH B 3 204 7 HOH WAT . F 4 HOH B 4 205 11 HOH WAT . F 4 HOH B 5 206 12 HOH WAT . F 4 HOH B 6 207 15 HOH WAT . F 4 HOH B 7 208 16 HOH WAT . F 4 HOH B 8 209 19 HOH WAT . F 4 HOH B 9 210 20 HOH WAT . F 4 HOH B 10 211 22 HOH WAT . F 4 HOH B 11 212 23 HOH WAT . F 4 HOH B 12 213 24 HOH WAT . F 4 HOH B 13 214 25 HOH WAT . F 4 HOH B 14 215 26 HOH WAT . F 4 HOH B 15 216 27 HOH WAT . F 4 HOH B 16 217 31 HOH WAT . F 4 HOH B 17 218 32 HOH WAT . F 4 HOH B 18 219 33 HOH WAT . F 4 HOH B 19 220 35 HOH WAT . F 4 HOH B 20 221 36 HOH WAT . F 4 HOH B 21 222 38 HOH WAT . F 4 HOH B 22 223 39 HOH WAT . F 4 HOH B 23 224 40 HOH WAT . F 4 HOH B 24 225 46 HOH WAT . F 4 HOH B 25 226 47 HOH WAT . F 4 HOH B 26 227 48 HOH WAT . F 4 HOH B 27 228 56 HOH WAT . F 4 HOH B 28 229 57 HOH WAT . F 4 HOH B 29 230 58 HOH WAT . F 4 HOH B 30 231 59 HOH WAT . F 4 HOH B 31 232 61 HOH WAT . F 4 HOH B 32 233 65 HOH WAT . F 4 HOH B 33 234 68 HOH WAT . F 4 HOH B 34 235 69 HOH WAT . F 4 HOH B 35 236 70 HOH WAT . F 4 HOH B 36 237 71 HOH WAT . F 4 HOH B 37 238 74 HOH WAT . F 4 HOH B 38 239 77 HOH WAT . F 4 HOH B 39 240 78 HOH WAT . F 4 HOH B 40 241 81 HOH WAT . F 4 HOH B 41 242 83 HOH WAT . F 4 HOH B 42 243 85 HOH WAT . F 4 HOH B 43 244 88 HOH WAT . F 4 HOH B 44 245 90 HOH WAT . F 4 HOH B 45 246 94 HOH WAT . F 4 HOH B 46 247 97 HOH WAT . F 4 HOH B 47 248 98 HOH WAT . F 4 HOH B 48 249 100 HOH WAT . F 4 HOH B 49 250 101 HOH WAT . F 4 HOH B 50 251 102 HOH WAT . F 4 HOH B 51 252 106 HOH WAT . F 4 HOH B 52 253 107 HOH WAT . F 4 HOH B 53 254 108 HOH WAT . F 4 HOH B 54 255 109 HOH WAT . F 4 HOH B 55 256 116 HOH WAT . F 4 HOH B 56 257 117 HOH WAT . F 4 HOH B 57 258 118 HOH WAT . F 4 HOH B 58 259 119 HOH WAT . F 4 HOH B 59 260 121 HOH WAT . F 4 HOH B 60 261 122 HOH WAT . F 4 HOH B 61 262 125 HOH WAT . F 4 HOH B 62 263 130 HOH WAT . F 4 HOH B 63 264 134 HOH WAT . F 4 HOH B 64 265 138 HOH WAT . F 4 HOH B 65 266 139 HOH WAT . F 4 HOH B 66 267 141 HOH WAT . F 4 HOH B 67 268 142 HOH WAT . F 4 HOH B 68 269 152 HOH WAT . F 4 HOH B 69 270 154 HOH WAT . F 4 HOH B 70 271 155 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACY . . . D 3 -0.783 13.066 57.97 1 44.3 ? C ACY 201 B 1 HETATM 2 O O ACY . . . D 3 0.204 13.774 58.407 1 43.82 ? O ACY 201 B 1 HETATM 3 O OXT ACY . . . D 3 -1.408 13.178 56.706 1 43.66 ? OXT ACY 201 B 1 HETATM 4 C CH3 ACY . . . D 3 -1.278 12.017 58.972 1 42.75 ? CH3 ACY 201 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #