data_1U54 # _model_server_result.job_id kWJpdHvR7Gkc3TDeZQKAHg _model_server_result.datetime_utc '2025-03-01 08:12:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u54 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":399}' # _entry.id 1U54 # _exptl.entry_id 1U54 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.28 _cell.angle_gamma 90 _cell.entry_id 1U54 _cell.length_a 200.384 _cell.length_b 42.332 _cell.length_c 70.848 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U54 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 177 A HIS 283 1_555 A N PTR 178 A PTR 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C PTR 178 A PTR 284 1_555 A N VAL 179 A VAL 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 E O2G ACP . A ACP 101 1_555 C MG MG . A MG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc2 E O2B ACP . A ACP 101 1_555 C MG MG . A MG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc3 E O1G ACP . A ACP 101 1_555 D MG MG . A MG 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc4 E O2G ACP . A ACP 101 1_555 D MG MG . A MG 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc5 E O3A ACP . A ACP 101 1_555 D MG MG . A MG 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc6 E O2A ACP . A ACP 101 1_555 D MG MG . A MG 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc7 A ND2 ASN 151 A ASN 257 1_555 D MG MG . A MG 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc8 A OD1 ASP 164 A ASP 270 1_555 C MG MG . A MG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc9 A OD2 ASP 164 A ASP 270 1_555 C MG MG . A MG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.095 ? metalc ? metalc10 A OD1 ASP 164 A ASP 270 1_555 D MG MG . A MG 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc11 C MG MG . A MG 398 1_555 D MG MG . A MG 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc12 B OD1 ASN 151 B ASN 257 1_555 G MG MG . B MG 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc13 B OD2 ASP 164 B ASP 270 1_555 F MG MG . B MG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc14 B OD1 ASP 164 B ASP 270 1_555 F MG MG . B MG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc15 B OD1 ASP 164 B ASP 270 1_555 G MG MG . B MG 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc16 F MG MG . B MG 398 1_555 H O1G ACP . B ACP 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? metalc ? metalc17 F MG MG . B MG 398 1_555 H O2B ACP . B ACP 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.977 ? metalc ? metalc18 G MG MG . B MG 399 1_555 H O3G ACP . B ACP 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? metalc ? metalc19 G MG MG . B MG 399 1_555 H O2A ACP . B ACP 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc20 G MG MG . B MG 399 1_555 H O1G ACP . B ACP 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1U54 _atom_sites.fract_transf_matrix[1][1] 0.00499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000549 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023623 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0142 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 398 1 MG MG . D 3 MG A 1 399 2 MG MG . E 4 ACP A 1 101 1 ACP ACP . F 3 MG B 1 398 3 MG MG . G 3 MG B 1 399 4 MG MG . H 4 ACP B 1 400 1 ACP ACP . I 5 HOH A 1 5 5 HOH HOH . I 5 HOH A 2 6 6 HOH HOH . I 5 HOH A 3 10 10 HOH HOH . I 5 HOH A 4 11 11 HOH HOH . I 5 HOH A 5 12 12 HOH HOH . I 5 HOH A 6 13 13 HOH HOH . J 5 HOH B 1 1 1 HOH HOH . J 5 HOH B 2 7 7 HOH HOH . J 5 HOH B 3 8 8 HOH HOH . J 5 HOH B 4 9 9 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 16.471 _atom_site.Cartn_y 20.492 _atom_site.Cartn_z 84.091 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 55.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 399 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #