data_1U55 # _model_server_result.job_id mrXAabyeRLwHjfGqsBR-tw _model_server_result.datetime_utc '2024-11-08 17:55:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u55 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 1U55 # _exptl.entry_id 1U55 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 31.999 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXYGEN MOLECULE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.33 _cell.angle_gamma 90 _cell.entry_id 1U55 _cell.length_a 91.48 _cell.length_b 126.99 _cell.length_c 42.572 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U55 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 102 A HIS 102 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc2 C FE HEM . A HEM 500 1_555 D O1 OXY . A OXY 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.842 ? metalc ? metalc3 C FE HEM . A HEM 500 1_555 D O2 OXY . A OXY 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc4 B NE2 HIS 102 B HIS 102 1_555 F FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc5 F FE HEM . B HEM 502 1_555 G O1 OXY . B OXY 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? metalc ? metalc6 F FE HEM . B HEM 502 1_555 G O2 OXY . B OXY 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? # _chem_comp.formula O2 _chem_comp.formula_weight 31.999 _chem_comp.id OXY _chem_comp.mon_nstd_flag . _chem_comp.name 'OXYGEN MOLECULE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 O1 _chem_comp_bond.atom_id_2 O2 _chem_comp_bond.comp_id OXY _chem_comp_bond.value_order doub _chem_comp_bond.pdbx_ordinal 306 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 1U55 _atom_sites.fract_transf_matrix[1][1] 0.010931 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000828 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023557 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 500 500 HEM HEM . D 3 OXY A 1 501 501 OXY O2 . E 4 CL B 1 189 1 CL CL . F 2 HEM B 1 502 502 HEM HEM . G 3 OXY B 1 503 503 OXY O2 . H 5 HOH A 1 502 2 HOH HOH . H 5 HOH A 2 503 3 HOH HOH . H 5 HOH A 3 504 4 HOH HOH . H 5 HOH A 4 505 5 HOH HOH . H 5 HOH A 5 506 6 HOH HOH . H 5 HOH A 6 507 7 HOH HOH . H 5 HOH A 7 508 8 HOH HOH . H 5 HOH A 8 509 9 HOH HOH . H 5 HOH A 9 510 10 HOH HOH . H 5 HOH A 10 511 11 HOH HOH . H 5 HOH A 11 512 12 HOH HOH . H 5 HOH A 12 513 13 HOH HOH . H 5 HOH A 13 514 14 HOH HOH . H 5 HOH A 14 515 15 HOH HOH . H 5 HOH A 15 516 16 HOH HOH . H 5 HOH A 16 517 17 HOH HOH . H 5 HOH A 17 518 18 HOH HOH . H 5 HOH A 18 519 19 HOH HOH . H 5 HOH A 19 520 20 HOH HOH . H 5 HOH A 20 521 22 HOH HOH . H 5 HOH A 21 522 23 HOH HOH . H 5 HOH A 22 523 25 HOH HOH . H 5 HOH A 23 524 26 HOH HOH . H 5 HOH A 24 525 27 HOH HOH . H 5 HOH A 25 526 28 HOH HOH . H 5 HOH A 26 527 29 HOH HOH . H 5 HOH A 27 528 30 HOH HOH . H 5 HOH A 28 529 33 HOH HOH . H 5 HOH A 29 530 34 HOH HOH . H 5 HOH A 30 531 35 HOH HOH . H 5 HOH A 31 532 36 HOH HOH . H 5 HOH A 32 533 37 HOH HOH . H 5 HOH A 33 534 38 HOH HOH . H 5 HOH A 34 535 39 HOH HOH . H 5 HOH A 35 536 41 HOH HOH . H 5 HOH A 36 537 43 HOH HOH . H 5 HOH A 37 538 44 HOH HOH . H 5 HOH A 38 539 45 HOH HOH . H 5 HOH A 39 540 46 HOH HOH . H 5 HOH A 40 541 47 HOH HOH . H 5 HOH A 41 542 48 HOH HOH . H 5 HOH A 42 543 49 HOH HOH . H 5 HOH A 43 544 50 HOH HOH . H 5 HOH A 44 545 52 HOH HOH . H 5 HOH A 45 546 53 HOH HOH . H 5 HOH A 46 547 54 HOH HOH . H 5 HOH A 47 548 55 HOH HOH . H 5 HOH A 48 549 56 HOH HOH . H 5 HOH A 49 550 59 HOH HOH . H 5 HOH A 50 551 60 HOH HOH . H 5 HOH A 51 552 61 HOH HOH . H 5 HOH A 52 553 63 HOH HOH . H 5 HOH A 53 554 65 HOH HOH . H 5 HOH A 54 555 67 HOH HOH . H 5 HOH A 55 556 68 HOH HOH . H 5 HOH A 56 557 69 HOH HOH . H 5 HOH A 57 558 70 HOH HOH . H 5 HOH A 58 559 71 HOH HOH . H 5 HOH A 59 560 73 HOH HOH . H 5 HOH A 60 561 74 HOH HOH . H 5 HOH A 61 562 75 HOH HOH . H 5 HOH A 62 563 77 HOH HOH . H 5 HOH A 63 564 78 HOH HOH . H 5 HOH A 64 565 79 HOH HOH . H 5 HOH A 65 566 80 HOH HOH . H 5 HOH A 66 567 81 HOH HOH . H 5 HOH A 67 568 82 HOH HOH . H 5 HOH A 68 569 83 HOH HOH . H 5 HOH A 69 570 85 HOH HOH . H 5 HOH A 70 571 86 HOH HOH . H 5 HOH A 71 572 87 HOH HOH . H 5 HOH A 72 573 88 HOH HOH . H 5 HOH A 73 574 89 HOH HOH . H 5 HOH A 74 575 90 HOH HOH . H 5 HOH A 75 576 93 HOH HOH . H 5 HOH A 76 577 94 HOH HOH . H 5 HOH A 77 578 97 HOH HOH . H 5 HOH A 78 579 99 HOH HOH . H 5 HOH A 79 580 100 HOH HOH . H 5 HOH A 80 581 101 HOH HOH . H 5 HOH A 81 582 102 HOH HOH . H 5 HOH A 82 583 103 HOH HOH . H 5 HOH A 83 584 104 HOH HOH . H 5 HOH A 84 585 105 HOH HOH . H 5 HOH A 85 586 106 HOH HOH . H 5 HOH A 86 587 107 HOH HOH . H 5 HOH A 87 588 108 HOH HOH . H 5 HOH A 88 589 109 HOH HOH . H 5 HOH A 89 590 111 HOH HOH . H 5 HOH A 90 591 112 HOH HOH . H 5 HOH A 91 592 113 HOH HOH . H 5 HOH A 92 593 115 HOH HOH . H 5 HOH A 93 594 116 HOH HOH . H 5 HOH A 94 595 117 HOH HOH . H 5 HOH A 95 596 118 HOH HOH . H 5 HOH A 96 597 119 HOH HOH . H 5 HOH A 97 598 121 HOH HOH . H 5 HOH A 98 599 122 HOH HOH . H 5 HOH A 99 600 123 HOH HOH . H 5 HOH A 100 601 125 HOH HOH . H 5 HOH A 101 602 126 HOH HOH . H 5 HOH A 102 603 127 HOH HOH . H 5 HOH A 103 604 128 HOH HOH . H 5 HOH A 104 605 131 HOH HOH . H 5 HOH A 105 606 133 HOH HOH . H 5 HOH A 106 607 134 HOH HOH . H 5 HOH A 107 608 137 HOH HOH . H 5 HOH A 108 609 140 HOH HOH . H 5 HOH A 109 610 141 HOH HOH . H 5 HOH A 110 611 144 HOH HOH . H 5 HOH A 111 612 147 HOH HOH . H 5 HOH A 112 613 152 HOH HOH . H 5 HOH A 113 614 153 HOH HOH . H 5 HOH A 114 615 154 HOH HOH . H 5 HOH A 115 616 155 HOH HOH . H 5 HOH A 116 617 156 HOH HOH . H 5 HOH A 117 618 157 HOH HOH . H 5 HOH A 118 619 158 HOH HOH . H 5 HOH A 119 620 160 HOH HOH . H 5 HOH A 120 621 161 HOH HOH . H 5 HOH A 121 622 162 HOH HOH . H 5 HOH A 122 623 163 HOH HOH . H 5 HOH A 123 624 169 HOH HOH . H 5 HOH A 124 625 171 HOH HOH . H 5 HOH A 125 626 172 HOH HOH . H 5 HOH A 126 627 173 HOH HOH . H 5 HOH A 127 628 174 HOH HOH . H 5 HOH A 128 629 177 HOH HOH . H 5 HOH A 129 630 178 HOH HOH . H 5 HOH A 130 631 179 HOH HOH . H 5 HOH A 131 632 181 HOH HOH . H 5 HOH A 132 633 182 HOH HOH . H 5 HOH A 133 634 183 HOH HOH . H 5 HOH A 134 635 184 HOH HOH . H 5 HOH A 135 636 185 HOH HOH . H 5 HOH A 136 637 186 HOH HOH . H 5 HOH A 137 638 187 HOH HOH . H 5 HOH A 138 639 189 HOH HOH . H 5 HOH A 139 640 191 HOH HOH . H 5 HOH A 140 641 192 HOH HOH . H 5 HOH A 141 642 194 HOH HOH . H 5 HOH A 142 643 195 HOH HOH . H 5 HOH A 143 644 196 HOH HOH . H 5 HOH A 144 645 197 HOH HOH . H 5 HOH A 145 646 198 HOH HOH . H 5 HOH A 146 647 199 HOH HOH . H 5 HOH A 147 648 201 HOH HOH . H 5 HOH A 148 649 202 HOH HOH . H 5 HOH A 149 650 204 HOH HOH . H 5 HOH A 150 651 206 HOH HOH . H 5 HOH A 151 652 207 HOH HOH . H 5 HOH A 152 653 209 HOH HOH . H 5 HOH A 153 654 211 HOH HOH . H 5 HOH A 154 655 215 HOH HOH . H 5 HOH A 155 656 216 HOH HOH . H 5 HOH A 156 657 217 HOH HOH . H 5 HOH A 157 658 218 HOH HOH . H 5 HOH A 158 659 219 HOH HOH . H 5 HOH A 159 660 222 HOH HOH . H 5 HOH A 160 661 225 HOH HOH . H 5 HOH A 161 662 226 HOH HOH . H 5 HOH A 162 663 227 HOH HOH . H 5 HOH A 163 664 228 HOH HOH . H 5 HOH A 164 665 229 HOH HOH . H 5 HOH A 165 666 230 HOH HOH . H 5 HOH A 166 667 232 HOH HOH . H 5 HOH A 167 668 236 HOH HOH . H 5 HOH A 168 669 237 HOH HOH . H 5 HOH A 169 670 238 HOH HOH . H 5 HOH A 170 671 239 HOH HOH . H 5 HOH A 171 672 240 HOH HOH . H 5 HOH A 172 673 244 HOH HOH . H 5 HOH A 173 674 245 HOH HOH . H 5 HOH A 174 675 246 HOH HOH . H 5 HOH A 175 676 249 HOH HOH . H 5 HOH A 176 677 250 HOH HOH . H 5 HOH A 177 678 251 HOH HOH . H 5 HOH A 178 679 252 HOH HOH . H 5 HOH A 179 680 254 HOH HOH . H 5 HOH A 180 681 256 HOH HOH . H 5 HOH A 181 682 258 HOH HOH . H 5 HOH A 182 683 260 HOH HOH . H 5 HOH A 183 684 261 HOH HOH . H 5 HOH A 184 685 263 HOH HOH . H 5 HOH A 185 686 265 HOH HOH . H 5 HOH A 186 687 266 HOH HOH . H 5 HOH A 187 688 267 HOH HOH . H 5 HOH A 188 689 268 HOH HOH . H 5 HOH A 189 690 269 HOH HOH . I 5 HOH B 1 504 21 HOH HOH . I 5 HOH B 2 505 24 HOH HOH . I 5 HOH B 3 506 31 HOH HOH . I 5 HOH B 4 507 32 HOH HOH . I 5 HOH B 5 508 40 HOH HOH . I 5 HOH B 6 509 42 HOH HOH . I 5 HOH B 7 510 51 HOH HOH . I 5 HOH B 8 511 57 HOH HOH . I 5 HOH B 9 512 58 HOH HOH . I 5 HOH B 10 513 62 HOH HOH . I 5 HOH B 11 514 64 HOH HOH . I 5 HOH B 12 515 66 HOH HOH . I 5 HOH B 13 516 72 HOH HOH . I 5 HOH B 14 517 76 HOH HOH . I 5 HOH B 15 518 84 HOH HOH . I 5 HOH B 16 519 91 HOH HOH . I 5 HOH B 17 520 92 HOH HOH . I 5 HOH B 18 521 95 HOH HOH . I 5 HOH B 19 522 96 HOH HOH . I 5 HOH B 20 523 98 HOH HOH . I 5 HOH B 21 524 110 HOH HOH . I 5 HOH B 22 525 114 HOH HOH . I 5 HOH B 23 526 120 HOH HOH . I 5 HOH B 24 527 124 HOH HOH . I 5 HOH B 25 528 129 HOH HOH . I 5 HOH B 26 529 130 HOH HOH . I 5 HOH B 27 530 132 HOH HOH . I 5 HOH B 28 531 135 HOH HOH . I 5 HOH B 29 532 136 HOH HOH . I 5 HOH B 30 533 138 HOH HOH . I 5 HOH B 31 534 139 HOH HOH . I 5 HOH B 32 535 142 HOH HOH . I 5 HOH B 33 536 143 HOH HOH . I 5 HOH B 34 537 145 HOH HOH . I 5 HOH B 35 538 146 HOH HOH . I 5 HOH B 36 539 148 HOH HOH . I 5 HOH B 37 540 149 HOH HOH . I 5 HOH B 38 541 150 HOH HOH . I 5 HOH B 39 542 151 HOH HOH . I 5 HOH B 40 543 159 HOH HOH . I 5 HOH B 41 544 164 HOH HOH . I 5 HOH B 42 545 165 HOH HOH . I 5 HOH B 43 546 166 HOH HOH . I 5 HOH B 44 547 167 HOH HOH . I 5 HOH B 45 548 168 HOH HOH . I 5 HOH B 46 549 170 HOH HOH . I 5 HOH B 47 550 175 HOH HOH . I 5 HOH B 48 551 176 HOH HOH . I 5 HOH B 49 552 180 HOH HOH . I 5 HOH B 50 553 188 HOH HOH . I 5 HOH B 51 554 190 HOH HOH . I 5 HOH B 52 555 193 HOH HOH . I 5 HOH B 53 556 200 HOH HOH . I 5 HOH B 54 557 203 HOH HOH . I 5 HOH B 55 558 205 HOH HOH . I 5 HOH B 56 559 208 HOH HOH . I 5 HOH B 57 560 210 HOH HOH . I 5 HOH B 58 561 212 HOH HOH . I 5 HOH B 59 562 213 HOH HOH . I 5 HOH B 60 563 214 HOH HOH . I 5 HOH B 61 564 220 HOH HOH . I 5 HOH B 62 565 221 HOH HOH . I 5 HOH B 63 566 223 HOH HOH . I 5 HOH B 64 567 224 HOH HOH . I 5 HOH B 65 568 231 HOH HOH . I 5 HOH B 66 569 233 HOH HOH . I 5 HOH B 67 570 234 HOH HOH . I 5 HOH B 68 571 235 HOH HOH . I 5 HOH B 69 572 241 HOH HOH . I 5 HOH B 70 573 242 HOH HOH . I 5 HOH B 71 574 243 HOH HOH . I 5 HOH B 72 575 247 HOH HOH . I 5 HOH B 73 576 248 HOH HOH . I 5 HOH B 74 577 253 HOH HOH . I 5 HOH B 75 578 255 HOH HOH . I 5 HOH B 76 579 257 HOH HOH . I 5 HOH B 77 580 259 HOH HOH . I 5 HOH B 78 581 262 HOH HOH . I 5 HOH B 79 582 264 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 OXY . . . D 3 18.919 2.878 8.632 1 21.94 ? O1 OXY 501 A 1 HETATM 2 O O2 OXY . . . D 3 17.822 2.871 9.338 1 26.67 ? O2 OXY 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 2 #