data_1U5C # _model_server_result.job_id bZdusAALJtw5OZ0-qKBn-g _model_server_result.datetime_utc '2024-11-28 13:15:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u5c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":336}' # _entry.id 1U5C # _exptl.entry_id 1U5C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1U5C _cell.length_a 80.225 _cell.length_b 86.017 _cell.length_c 91.07 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U5C _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 80.225 86.017 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 80.225 0 0 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 86.017 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 261 n n PA O2A NAD sing 262 n n PA O5B NAD sing 263 n n PA O3 NAD sing 264 n n O2A HOA2 NAD sing 265 n n O5B C5B NAD sing 266 n n C5B C4B NAD sing 267 n n C5B H51A NAD sing 268 n n C5B H52A NAD sing 269 n n C4B O4B NAD sing 270 n n C4B C3B NAD sing 271 n n C4B H4B NAD sing 272 n n O4B C1B NAD sing 273 n n C3B O3B NAD sing 274 n n C3B C2B NAD sing 275 n n C3B H3B NAD sing 276 n n O3B HO3A NAD sing 277 n n C2B O2B NAD sing 278 n n C2B C1B NAD sing 279 n n C2B H2B NAD sing 280 n n O2B HO2A NAD sing 281 n n C1B N9A NAD sing 282 n n C1B H1B NAD sing 283 n n N9A C8A NAD sing 284 n y N9A C4A NAD sing 285 n y C8A N7A NAD doub 286 n y C8A H8A NAD sing 287 n n N7A C5A NAD sing 288 n y C5A C6A NAD sing 289 n y C5A C4A NAD doub 290 n y C6A N6A NAD sing 291 n n C6A N1A NAD doub 292 n y N6A H61A NAD sing 293 n n N6A H62A NAD sing 294 n n N1A C2A NAD sing 295 n y C2A N3A NAD doub 296 n y C2A H2A NAD sing 297 n n N3A C4A NAD sing 298 n y O3 PN NAD sing 299 n n PN O1N NAD doub 300 n n PN O2N NAD sing 301 n n PN O5D NAD sing 302 n n O5D C5D NAD sing 303 n n C5D C4D NAD sing 304 n n C5D H51N NAD sing 305 n n C5D H52N NAD sing 306 n n C4D O4D NAD sing 307 n n C4D C3D NAD sing 308 n n C4D H4D NAD sing 309 n n O4D C1D NAD sing 310 n n C3D O3D NAD sing 311 n n C3D C2D NAD sing 312 n n C3D H3D NAD sing 313 n n O3D HO3N NAD sing 314 n n C2D O2D NAD sing 315 n n C2D C1D NAD sing 316 n n C2D H2D NAD sing 317 n n O2D HO2N NAD sing 318 n n C1D N1N NAD sing 319 n n C1D H1D NAD sing 320 n n N1N C2N NAD sing 321 n y N1N C6N NAD doub 322 n y C2N C3N NAD doub 323 n y C2N H2N NAD sing 324 n n C3N C7N NAD sing 325 n n C3N C4N NAD sing 326 n y C7N O7N NAD doub 327 n n C7N N7N NAD sing 328 n n N7N H71N NAD sing 329 n n N7N H72N NAD sing 330 n n C4N C5N NAD doub 331 n y C4N H4N NAD sing 332 n n C5N C6N NAD sing 333 n y C5N H5N NAD sing 334 n n C6N H6N NAD sing 335 n n # _atom_sites.entry_id 1U5C _atom_sites.fract_transf_matrix[1][1] 0.012465 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011626 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010981 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 336 316 NAD NAD . C 3 BIK A 1 401 401 BIK BIK . D 4 HOH A 1 402 2 HOH HOH . D 4 HOH A 2 403 3 HOH HOH . D 4 HOH A 3 404 4 HOH HOH . D 4 HOH A 4 405 6 HOH HOH . D 4 HOH A 5 406 7 HOH HOH . D 4 HOH A 6 407 8 HOH HOH . D 4 HOH A 7 408 11 HOH HOH . D 4 HOH A 8 409 12 HOH HOH . D 4 HOH A 9 410 13 HOH HOH . D 4 HOH A 10 411 15 HOH HOH . D 4 HOH A 11 412 16 HOH HOH . D 4 HOH A 12 413 17 HOH HOH . D 4 HOH A 13 414 19 HOH HOH . D 4 HOH A 14 415 20 HOH HOH . D 4 HOH A 15 416 21 HOH HOH . D 4 HOH A 16 417 22 HOH HOH . D 4 HOH A 17 418 25 HOH HOH . D 4 HOH A 18 419 26 HOH HOH . D 4 HOH A 19 420 27 HOH HOH . D 4 HOH A 20 421 28 HOH HOH . D 4 HOH A 21 422 29 HOH HOH . D 4 HOH A 22 423 30 HOH HOH . D 4 HOH A 23 424 32 HOH HOH . D 4 HOH A 24 425 35 HOH HOH . D 4 HOH A 25 426 36 HOH HOH . D 4 HOH A 26 427 37 HOH HOH . D 4 HOH A 27 428 38 HOH HOH . D 4 HOH A 28 429 39 HOH HOH . D 4 HOH A 29 430 40 HOH HOH . D 4 HOH A 30 431 42 HOH HOH . D 4 HOH A 31 432 43 HOH HOH . D 4 HOH A 32 433 44 HOH HOH . D 4 HOH A 33 434 45 HOH HOH . D 4 HOH A 34 435 46 HOH HOH . D 4 HOH A 35 436 47 HOH HOH . D 4 HOH A 36 437 48 HOH HOH . D 4 HOH A 37 438 49 HOH HOH . D 4 HOH A 38 439 50 HOH HOH . D 4 HOH A 39 440 52 HOH HOH . D 4 HOH A 40 441 53 HOH HOH . D 4 HOH A 41 442 54 HOH HOH . D 4 HOH A 42 443 55 HOH HOH . D 4 HOH A 43 444 56 HOH HOH . D 4 HOH A 44 445 57 HOH HOH . D 4 HOH A 45 446 58 HOH HOH . D 4 HOH A 46 447 60 HOH HOH . D 4 HOH A 47 448 61 HOH HOH . D 4 HOH A 48 449 62 HOH HOH . D 4 HOH A 49 450 64 HOH HOH . D 4 HOH A 50 451 65 HOH HOH . D 4 HOH A 51 452 66 HOH HOH . D 4 HOH A 52 453 67 HOH HOH . D 4 HOH A 53 454 69 HOH HOH . D 4 HOH A 54 455 70 HOH HOH . D 4 HOH A 55 456 71 HOH HOH . D 4 HOH A 56 457 72 HOH HOH . D 4 HOH A 57 458 73 HOH HOH . D 4 HOH A 58 459 80 HOH HOH . D 4 HOH A 59 460 81 HOH HOH . D 4 HOH A 60 461 82 HOH HOH . D 4 HOH A 61 462 83 HOH HOH . D 4 HOH A 62 463 84 HOH HOH . D 4 HOH A 63 464 85 HOH HOH . D 4 HOH A 64 465 86 HOH HOH . D 4 HOH A 65 466 92 HOH HOH . D 4 HOH A 66 467 95 HOH HOH . D 4 HOH A 67 468 97 HOH HOH . D 4 HOH A 68 469 98 HOH HOH . D 4 HOH A 69 470 99 HOH HOH . D 4 HOH A 70 471 103 HOH HOH . D 4 HOH A 71 472 106 HOH HOH . D 4 HOH A 72 473 110 HOH HOH . D 4 HOH A 73 474 112 HOH HOH . D 4 HOH A 74 475 113 HOH HOH . D 4 HOH A 75 476 114 HOH HOH . D 4 HOH A 76 477 116 HOH HOH . D 4 HOH A 77 478 118 HOH HOH . D 4 HOH A 78 479 121 HOH HOH . D 4 HOH A 79 480 122 HOH HOH . D 4 HOH A 80 481 127 HOH HOH . D 4 HOH A 81 482 129 HOH HOH . D 4 HOH A 82 483 130 HOH HOH . D 4 HOH A 83 484 132 HOH HOH . D 4 HOH A 84 485 133 HOH HOH . D 4 HOH A 85 486 136 HOH HOH . D 4 HOH A 86 487 139 HOH HOH . D 4 HOH A 87 488 140 HOH HOH . D 4 HOH A 88 489 142 HOH HOH . D 4 HOH A 89 490 143 HOH HOH . D 4 HOH A 90 491 150 HOH HOH . D 4 HOH A 91 492 152 HOH HOH . D 4 HOH A 92 493 155 HOH HOH . D 4 HOH A 93 494 157 HOH HOH . D 4 HOH A 94 495 169 HOH HOH . D 4 HOH A 95 496 170 HOH HOH . D 4 HOH A 96 497 173 HOH HOH . D 4 HOH A 97 498 175 HOH HOH . D 4 HOH A 98 499 185 HOH HOH . D 4 HOH A 99 500 186 HOH HOH . D 4 HOH A 100 501 187 HOH HOH . D 4 HOH A 101 502 190 HOH HOH . D 4 HOH A 102 503 198 HOH HOH . D 4 HOH A 103 504 199 HOH HOH . D 4 HOH A 104 505 201 HOH HOH . D 4 HOH A 105 506 202 HOH HOH . D 4 HOH A 106 507 203 HOH HOH . D 4 HOH A 107 508 206 HOH HOH . D 4 HOH A 108 509 209 HOH HOH . D 4 HOH A 109 510 210 HOH HOH . D 4 HOH A 110 511 211 HOH HOH . D 4 HOH A 111 512 217 HOH HOH . D 4 HOH A 112 513 218 HOH HOH . D 4 HOH A 113 514 220 HOH HOH . D 4 HOH A 114 515 221 HOH HOH . D 4 HOH A 115 516 223 HOH HOH . D 4 HOH A 116 517 224 HOH HOH . D 4 HOH A 117 518 225 HOH HOH . D 4 HOH A 118 519 226 HOH HOH . D 4 HOH A 119 520 227 HOH HOH . D 4 HOH A 120 521 229 HOH HOH . D 4 HOH A 121 522 230 HOH HOH . D 4 HOH A 122 523 234 HOH HOH . D 4 HOH A 123 524 236 HOH HOH . D 4 HOH A 124 525 238 HOH HOH . D 4 HOH A 125 526 239 HOH HOH . D 4 HOH A 126 527 240 HOH HOH . D 4 HOH A 127 528 241 HOH HOH . D 4 HOH A 128 529 242 HOH HOH . D 4 HOH A 129 530 243 HOH HOH . D 4 HOH A 130 531 244 HOH HOH . D 4 HOH A 131 532 245 HOH HOH . D 4 HOH A 132 533 246 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 34.936 15.493 7.601 1 30.8 ? PA NAD 336 A 1 HETATM 2 O O1A NAD . . . B 2 34.64 14.046 7.847 1 30.08 ? O1A NAD 336 A 1 HETATM 3 O O2A NAD . . . B 2 35.921 15.698 6.419 1 26.79 ? O2A NAD 336 A 1 HETATM 4 O O5B NAD . . . B 2 35.413 16.108 9.022 1 31.51 ? O5B NAD 336 A 1 HETATM 5 C C5B NAD . . . B 2 34.95 15.661 10.291 1 30.13 ? C5B NAD 336 A 1 HETATM 6 C C4B NAD . . . B 2 36.204 15.548 11.154 1 31.21 ? C4B NAD 336 A 1 HETATM 7 O O4B NAD . . . B 2 35.904 15.377 12.532 1 30.42 ? O4B NAD 336 A 1 HETATM 8 C C3B NAD . . . B 2 37.088 14.367 10.71 1 30.9 ? C3B NAD 336 A 1 HETATM 9 O O3B NAD . . . B 2 38.387 14.849 10.406 1 30.36 ? O3B NAD 336 A 1 HETATM 10 C C2B NAD . . . B 2 37.047 13.4 11.902 1 30.72 ? C2B NAD 336 A 1 HETATM 11 O O2B NAD . . . B 2 38.229 12.62 12.034 1 26.89 ? O2B NAD 336 A 1 HETATM 12 C C1B NAD . . . B 2 36.801 14.415 13.038 1 30.24 ? C1B NAD 336 A 1 HETATM 13 N N9A NAD . . . B 2 36.304 13.978 14.359 1 31.97 ? N9A NAD 336 A 1 HETATM 14 C C8A NAD . . . B 2 35.564 12.884 14.827 1 32.63 ? C8A NAD 336 A 1 HETATM 15 N N7A NAD . . . B 2 35.46 13.02 16.192 1 32.47 ? N7A NAD 336 A 1 HETATM 16 C C5A NAD . . . B 2 36.115 14.184 16.564 1 32.29 ? C5A NAD 336 A 1 HETATM 17 C C6A NAD . . . B 2 36.349 14.883 17.765 1 32.68 ? C6A NAD 336 A 1 HETATM 18 N N6A NAD . . . B 2 35.885 14.45 18.928 1 33.87 ? N6A NAD 336 A 1 HETATM 19 N N1A NAD . . . B 2 37.074 16.062 17.79 1 31.79 ? N1A NAD 336 A 1 HETATM 20 C C2A NAD . . . B 2 37.579 16.576 16.618 1 31.12 ? C2A NAD 336 A 1 HETATM 21 N N3A NAD . . . B 2 37.354 15.9 15.446 1 30.22 ? N3A NAD 336 A 1 HETATM 22 C C4A NAD . . . B 2 36.638 14.759 15.419 1 30.69 ? C4A NAD 336 A 1 HETATM 23 O O3 NAD . . . B 2 33.528 16.256 7.363 1 29.56 ? O3 NAD 336 A 1 HETATM 24 P PN NAD . . . B 2 33.258 17.735 6.76 1 30.76 ? PN NAD 336 A 1 HETATM 25 O O1N NAD . . . B 2 32.945 17.657 5.293 1 29.85 ? O1N NAD 336 A 1 HETATM 26 O O2N NAD . . . B 2 34.307 18.65 7.301 1 30.19 ? O2N NAD 336 A 1 HETATM 27 O O5D NAD . . . B 2 31.813 18.042 7.473 1 33.49 ? O5D NAD 336 A 1 HETATM 28 C C5D NAD . . . B 2 31.628 17.661 8.846 1 34.86 ? C5D NAD 336 A 1 HETATM 29 C C4D NAD . . . B 2 30.221 17.79 9.48 1 35.33 ? C4D NAD 336 A 1 HETATM 30 O O4D NAD . . . B 2 29.574 18.977 9.036 1 35.96 ? O4D NAD 336 A 1 HETATM 31 C C3D NAD . . . B 2 29.279 16.583 9.22 1 34.39 ? C3D NAD 336 A 1 HETATM 32 O O3D NAD . . . B 2 28.595 16.134 10.379 1 30.02 ? O3D NAD 336 A 1 HETATM 33 C C2D NAD . . . B 2 28.321 17.119 8.172 1 34.94 ? C2D NAD 336 A 1 HETATM 34 O O2D NAD . . . B 2 27.083 16.447 8.176 1 32.33 ? O2D NAD 336 A 1 HETATM 35 C C1D NAD . . . B 2 28.272 18.612 8.569 1 37.11 ? C1D NAD 336 A 1 HETATM 36 N N1N NAD . . . B 2 27.811 19.565 7.517 1 38.07 ? N1N NAD 336 A 1 HETATM 37 C C2N NAD . . . B 2 26.957 20.521 7.959 1 38.26 ? C2N NAD 336 A 1 HETATM 38 C C3N NAD . . . B 2 26.439 21.477 7.113 1 38.72 ? C3N NAD 336 A 1 HETATM 39 C C7N NAD . . . B 2 25.499 22.486 7.696 1 38.86 ? C7N NAD 336 A 1 HETATM 40 O O7N NAD . . . B 2 24.988 23.44 6.814 1 41.77 ? O7N NAD 336 A 1 HETATM 41 N N7N NAD . . . B 2 25.149 22.516 8.993 1 38.96 ? N7N NAD 336 A 1 HETATM 42 C C4N NAD . . . B 2 26.816 21.464 5.758 1 38.43 ? C4N NAD 336 A 1 HETATM 43 C C5N NAD . . . B 2 27.709 20.488 5.287 1 38.35 ? C5N NAD 336 A 1 HETATM 44 C C6N NAD . . . B 2 28.202 19.533 6.187 1 38.94 ? C6N NAD 336 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #