data_1U5C # _model_server_result.job_id x45XRpK0sQAIOc_OQja2tg _model_server_result.datetime_utc '2024-11-28 12:33:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u5c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 1U5C # _exptl.entry_id 1U5C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.179 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3,7-DIHYDROXY-2-NAPHTHOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1U5C _cell.length_a 80.225 _cell.length_b 86.017 _cell.length_c 91.07 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U5C _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 80.225 86.017 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 80.225 0 0 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 86.017 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H8 O4' _chem_comp.formula_weight 204.179 _chem_comp.id BIK _chem_comp.mon_nstd_flag . _chem_comp.name '3,7-DIHYDROXY-2-NAPHTHOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '3,7-DIHYDROXYNAPHTHALENE-2-CARBOXYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C6 BIK sing 70 n n O6 HO6 BIK sing 71 n n C6 C7 BIK doub 72 n y C6 C5 BIK sing 73 n y C7 C8 BIK sing 74 n y C7 H7 BIK sing 75 n n C8 C8A BIK doub 76 n y C8 H8 BIK sing 77 n n C8A C4A BIK sing 78 n y C8A C1 BIK sing 79 n y C4A C5 BIK doub 80 n y C4A C4 BIK sing 81 n y C5 H5 BIK sing 82 n n C4 C3 BIK doub 83 n y C4 H4 BIK sing 84 n n C1 C2 BIK doub 85 n y C1 H1 BIK sing 86 n n C2 O2 BIK sing 87 n n C2 C3 BIK sing 88 n y O2 HO2 BIK sing 89 n n C3 C31 BIK sing 90 n n C31 O32 BIK sing 91 n n C31 O31 BIK doub 92 n n O32 H32 BIK sing 93 n n # _atom_sites.entry_id 1U5C _atom_sites.fract_transf_matrix[1][1] 0.012465 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011626 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010981 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 336 316 NAD NAD . C 3 BIK A 1 401 401 BIK BIK . D 4 HOH A 1 402 2 HOH HOH . D 4 HOH A 2 403 3 HOH HOH . D 4 HOH A 3 404 4 HOH HOH . D 4 HOH A 4 405 6 HOH HOH . D 4 HOH A 5 406 7 HOH HOH . D 4 HOH A 6 407 8 HOH HOH . D 4 HOH A 7 408 11 HOH HOH . D 4 HOH A 8 409 12 HOH HOH . D 4 HOH A 9 410 13 HOH HOH . D 4 HOH A 10 411 15 HOH HOH . D 4 HOH A 11 412 16 HOH HOH . D 4 HOH A 12 413 17 HOH HOH . D 4 HOH A 13 414 19 HOH HOH . D 4 HOH A 14 415 20 HOH HOH . D 4 HOH A 15 416 21 HOH HOH . D 4 HOH A 16 417 22 HOH HOH . D 4 HOH A 17 418 25 HOH HOH . D 4 HOH A 18 419 26 HOH HOH . D 4 HOH A 19 420 27 HOH HOH . D 4 HOH A 20 421 28 HOH HOH . D 4 HOH A 21 422 29 HOH HOH . D 4 HOH A 22 423 30 HOH HOH . D 4 HOH A 23 424 32 HOH HOH . D 4 HOH A 24 425 35 HOH HOH . D 4 HOH A 25 426 36 HOH HOH . D 4 HOH A 26 427 37 HOH HOH . D 4 HOH A 27 428 38 HOH HOH . D 4 HOH A 28 429 39 HOH HOH . D 4 HOH A 29 430 40 HOH HOH . D 4 HOH A 30 431 42 HOH HOH . D 4 HOH A 31 432 43 HOH HOH . D 4 HOH A 32 433 44 HOH HOH . D 4 HOH A 33 434 45 HOH HOH . D 4 HOH A 34 435 46 HOH HOH . D 4 HOH A 35 436 47 HOH HOH . D 4 HOH A 36 437 48 HOH HOH . D 4 HOH A 37 438 49 HOH HOH . D 4 HOH A 38 439 50 HOH HOH . D 4 HOH A 39 440 52 HOH HOH . D 4 HOH A 40 441 53 HOH HOH . D 4 HOH A 41 442 54 HOH HOH . D 4 HOH A 42 443 55 HOH HOH . D 4 HOH A 43 444 56 HOH HOH . D 4 HOH A 44 445 57 HOH HOH . D 4 HOH A 45 446 58 HOH HOH . D 4 HOH A 46 447 60 HOH HOH . D 4 HOH A 47 448 61 HOH HOH . D 4 HOH A 48 449 62 HOH HOH . D 4 HOH A 49 450 64 HOH HOH . D 4 HOH A 50 451 65 HOH HOH . D 4 HOH A 51 452 66 HOH HOH . D 4 HOH A 52 453 67 HOH HOH . D 4 HOH A 53 454 69 HOH HOH . D 4 HOH A 54 455 70 HOH HOH . D 4 HOH A 55 456 71 HOH HOH . D 4 HOH A 56 457 72 HOH HOH . D 4 HOH A 57 458 73 HOH HOH . D 4 HOH A 58 459 80 HOH HOH . D 4 HOH A 59 460 81 HOH HOH . D 4 HOH A 60 461 82 HOH HOH . D 4 HOH A 61 462 83 HOH HOH . D 4 HOH A 62 463 84 HOH HOH . D 4 HOH A 63 464 85 HOH HOH . D 4 HOH A 64 465 86 HOH HOH . D 4 HOH A 65 466 92 HOH HOH . D 4 HOH A 66 467 95 HOH HOH . D 4 HOH A 67 468 97 HOH HOH . D 4 HOH A 68 469 98 HOH HOH . D 4 HOH A 69 470 99 HOH HOH . D 4 HOH A 70 471 103 HOH HOH . D 4 HOH A 71 472 106 HOH HOH . D 4 HOH A 72 473 110 HOH HOH . D 4 HOH A 73 474 112 HOH HOH . D 4 HOH A 74 475 113 HOH HOH . D 4 HOH A 75 476 114 HOH HOH . D 4 HOH A 76 477 116 HOH HOH . D 4 HOH A 77 478 118 HOH HOH . D 4 HOH A 78 479 121 HOH HOH . D 4 HOH A 79 480 122 HOH HOH . D 4 HOH A 80 481 127 HOH HOH . D 4 HOH A 81 482 129 HOH HOH . D 4 HOH A 82 483 130 HOH HOH . D 4 HOH A 83 484 132 HOH HOH . D 4 HOH A 84 485 133 HOH HOH . D 4 HOH A 85 486 136 HOH HOH . D 4 HOH A 86 487 139 HOH HOH . D 4 HOH A 87 488 140 HOH HOH . D 4 HOH A 88 489 142 HOH HOH . D 4 HOH A 89 490 143 HOH HOH . D 4 HOH A 90 491 150 HOH HOH . D 4 HOH A 91 492 152 HOH HOH . D 4 HOH A 92 493 155 HOH HOH . D 4 HOH A 93 494 157 HOH HOH . D 4 HOH A 94 495 169 HOH HOH . D 4 HOH A 95 496 170 HOH HOH . D 4 HOH A 96 497 173 HOH HOH . D 4 HOH A 97 498 175 HOH HOH . D 4 HOH A 98 499 185 HOH HOH . D 4 HOH A 99 500 186 HOH HOH . D 4 HOH A 100 501 187 HOH HOH . D 4 HOH A 101 502 190 HOH HOH . D 4 HOH A 102 503 198 HOH HOH . D 4 HOH A 103 504 199 HOH HOH . D 4 HOH A 104 505 201 HOH HOH . D 4 HOH A 105 506 202 HOH HOH . D 4 HOH A 106 507 203 HOH HOH . D 4 HOH A 107 508 206 HOH HOH . D 4 HOH A 108 509 209 HOH HOH . D 4 HOH A 109 510 210 HOH HOH . D 4 HOH A 110 511 211 HOH HOH . D 4 HOH A 111 512 217 HOH HOH . D 4 HOH A 112 513 218 HOH HOH . D 4 HOH A 113 514 220 HOH HOH . D 4 HOH A 114 515 221 HOH HOH . D 4 HOH A 115 516 223 HOH HOH . D 4 HOH A 116 517 224 HOH HOH . D 4 HOH A 117 518 225 HOH HOH . D 4 HOH A 118 519 226 HOH HOH . D 4 HOH A 119 520 227 HOH HOH . D 4 HOH A 120 521 229 HOH HOH . D 4 HOH A 121 522 230 HOH HOH . D 4 HOH A 122 523 234 HOH HOH . D 4 HOH A 123 524 236 HOH HOH . D 4 HOH A 124 525 238 HOH HOH . D 4 HOH A 125 526 239 HOH HOH . D 4 HOH A 126 527 240 HOH HOH . D 4 HOH A 127 528 241 HOH HOH . D 4 HOH A 128 529 242 HOH HOH . D 4 HOH A 129 530 243 HOH HOH . D 4 HOH A 130 531 244 HOH HOH . D 4 HOH A 131 532 245 HOH HOH . D 4 HOH A 132 533 246 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 BIK . A . C 3 20.695 16.118 7.922 0.5 34.03 ? O6 BIK 401 A 1 HETATM 2 O O6 BIK . B . C 3 24.32 20.088 3.226 0.5 33.71 ? O6 BIK 401 A 1 HETATM 3 C C6 BIK . A . C 3 21.715 16.33 7.226 0.5 32.76 ? C6 BIK 401 A 1 HETATM 4 C C6 BIK . B . C 3 24.2 19.119 4.018 0.5 32.5 ? C6 BIK 401 A 1 HETATM 5 C C7 BIK . A . C 3 22.797 15.434 7.294 0.5 33.88 ? C7 BIK 401 A 1 HETATM 6 C C7 BIK . B . C 3 25.307 18.303 4.194 0.5 33.09 ? C7 BIK 401 A 1 HETATM 7 C C8 BIK . A . C 3 23.957 15.623 6.538 0.5 32.31 ? C8 BIK 401 A 1 HETATM 8 C C8 BIK . B . C 3 25.249 17.212 5.041 0.5 33.42 ? C8 BIK 401 A 1 HETATM 9 C C8A BIK . A . C 3 24.048 16.72 5.69 0.5 32.99 ? C8A BIK 401 A 1 HETATM 10 C C8A BIK . B . C 3 24.077 16.913 5.725 0.5 32.95 ? C8A BIK 401 A 1 HETATM 11 C C4A BIK . A . C 3 22.906 17.691 5.615 0.5 31.33 ? C4A BIK 401 A 1 HETATM 12 C C4A BIK . B . C 3 22.874 17.788 5.538 0.5 30.65 ? C4A BIK 401 A 1 HETATM 13 C C5 BIK . A . C 3 21.767 17.448 6.391 0.5 31.27 ? C5 BIK 401 A 1 HETATM 14 C C5 BIK . B . C 3 22.994 18.867 4.676 0.5 30.84 ? C5 BIK 401 A 1 HETATM 15 C C4 BIK . A . C 3 23.009 18.792 4.78 0.5 30 ? C4 BIK 401 A 1 HETATM 16 C C4 BIK . B . C 3 21.679 17.494 6.213 0.5 28.98 ? C4 BIK 401 A 1 HETATM 17 C C1 BIK . A . C 3 25.201 16.907 4.931 0.5 32.46 ? C1 BIK 401 A 1 HETATM 18 C C1 BIK . B . C 3 24.046 15.813 6.588 0.5 31.65 ? C1 BIK 401 A 1 HETATM 19 C C2 BIK . A . C 3 25.304 18.008 4.091 0.5 31.42 ? C2 BIK 401 A 1 HETATM 20 C C2 BIK . B . C 3 22.852 15.526 7.268 0.5 32.57 ? C2 BIK 401 A 1 HETATM 21 O O2 BIK . A . C 3 26.352 18.172 3.405 0.5 29.97 ? O2 BIK 401 A 1 HETATM 22 O O2 BIK . B . C 3 22.787 14.535 8.053 0.5 35.35 ? O2 BIK 401 A 1 HETATM 23 C C3 BIK . A . C 3 24.169 18.981 4.023 0.5 30.82 ? C3 BIK 401 A 1 HETATM 24 C C3 BIK . B . C 3 21.634 16.392 7.077 0.5 29.04 ? C3 BIK 401 A 1 HETATM 25 C C31 BIK . A . C 3 24.312 20.159 3.091 0.5 30.84 ? C31 BIK 401 A 1 HETATM 26 C C31 BIK . B . C 3 20.398 16.01 7.846 0.5 26.81 ? C31 BIK 401 A 1 HETATM 27 O O32 BIK . A . C 3 23.42 20.994 2.961 0.5 30.81 ? O32 BIK 401 A 1 HETATM 28 O O32 BIK . B . C 3 19.366 16.665 7.755 0.5 21.02 ? O32 BIK 401 A 1 HETATM 29 O O31 BIK . A . C 3 25.342 20.294 2.442 0.5 29.92 ? O31 BIK 401 A 1 HETATM 30 O O31 BIK . B . C 3 20.449 15.015 8.585 0.5 25.51 ? O31 BIK 401 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #