data_1U5V # _model_server_result.job_id GHwmm2FL3hKcqaEaBYD6FA _model_server_result.datetime_utc '2024-11-25 07:59:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u5v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":274}' # _entry.id 1U5V # _exptl.entry_id 1U5V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1U5V _cell.length_a 91.214 _cell.length_b 91.214 _cell.length_c 220.233 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U5V _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 91.214 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 45.607 78.993641 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1U5V _atom_sites.fract_transf_matrix[1][1] 0.010963 _atom_sites.fract_transf_matrix[1][2] 0.00633 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012659 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004541 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 274 225 ATP ATP . C 3 FMT A 1 275 226 FMT FMT . D 4 HOH A 1 276 4 HOH HOH . D 4 HOH A 2 277 5 HOH HOH . D 4 HOH A 3 278 8 HOH HOH . D 4 HOH A 4 279 9 HOH HOH . D 4 HOH A 5 280 10 HOH HOH . D 4 HOH A 6 281 11 HOH HOH . D 4 HOH A 7 282 12 HOH HOH . D 4 HOH A 8 283 13 HOH HOH . D 4 HOH A 9 284 14 HOH HOH . D 4 HOH A 10 285 16 HOH HOH . D 4 HOH A 11 286 17 HOH HOH . D 4 HOH A 12 287 18 HOH HOH . D 4 HOH A 13 288 19 HOH HOH . D 4 HOH A 14 289 20 HOH HOH . D 4 HOH A 15 290 21 HOH HOH . D 4 HOH A 16 291 22 HOH HOH . D 4 HOH A 17 292 23 HOH HOH . D 4 HOH A 18 293 24 HOH HOH . D 4 HOH A 19 294 25 HOH HOH . D 4 HOH A 20 295 26 HOH HOH . D 4 HOH A 21 296 27 HOH HOH . D 4 HOH A 22 297 28 HOH HOH . D 4 HOH A 23 298 29 HOH HOH . D 4 HOH A 24 299 30 HOH HOH . D 4 HOH A 25 300 31 HOH HOH . D 4 HOH A 26 301 32 HOH HOH . D 4 HOH A 27 302 34 HOH HOH . D 4 HOH A 28 303 35 HOH HOH . D 4 HOH A 29 304 36 HOH HOH . D 4 HOH A 30 305 37 HOH HOH . D 4 HOH A 31 306 38 HOH HOH . D 4 HOH A 32 307 39 HOH HOH . D 4 HOH A 33 308 40 HOH HOH . D 4 HOH A 34 309 41 HOH HOH . D 4 HOH A 35 310 42 HOH HOH . D 4 HOH A 36 311 44 HOH HOH . D 4 HOH A 37 312 46 HOH HOH . D 4 HOH A 38 313 47 HOH HOH . D 4 HOH A 39 314 48 HOH HOH . D 4 HOH A 40 315 49 HOH HOH . D 4 HOH A 41 316 50 HOH HOH . D 4 HOH A 42 317 52 HOH HOH . D 4 HOH A 43 318 53 HOH HOH . D 4 HOH A 44 319 55 HOH HOH . D 4 HOH A 45 320 56 HOH HOH . D 4 HOH A 46 321 57 HOH HOH . D 4 HOH A 47 322 58 HOH HOH . D 4 HOH A 48 323 59 HOH HOH . D 4 HOH A 49 324 60 HOH HOH . D 4 HOH A 50 325 61 HOH HOH . D 4 HOH A 51 326 62 HOH HOH . D 4 HOH A 52 327 63 HOH HOH . D 4 HOH A 53 328 64 HOH HOH . D 4 HOH A 54 329 65 HOH HOH . D 4 HOH A 55 330 66 HOH HOH . D 4 HOH A 56 331 67 HOH HOH . D 4 HOH A 57 332 68 HOH HOH . D 4 HOH A 58 333 69 HOH HOH . D 4 HOH A 59 334 70 HOH HOH . D 4 HOH A 60 335 71 HOH HOH . D 4 HOH A 61 336 72 HOH HOH . D 4 HOH A 62 337 73 HOH HOH . D 4 HOH A 63 338 74 HOH HOH . D 4 HOH A 64 339 75 HOH HOH . D 4 HOH A 65 340 76 HOH HOH . D 4 HOH A 66 341 77 HOH HOH . D 4 HOH A 67 342 78 HOH HOH . D 4 HOH A 68 343 79 HOH HOH . D 4 HOH A 69 344 81 HOH HOH . D 4 HOH A 70 345 82 HOH HOH . D 4 HOH A 71 346 83 HOH HOH . D 4 HOH A 72 347 84 HOH HOH . D 4 HOH A 73 348 85 HOH HOH . D 4 HOH A 74 349 86 HOH HOH . D 4 HOH A 75 350 87 HOH HOH . D 4 HOH A 76 351 88 HOH HOH . D 4 HOH A 77 352 89 HOH HOH . D 4 HOH A 78 353 91 HOH HOH . D 4 HOH A 79 354 92 HOH HOH . D 4 HOH A 80 355 93 HOH HOH . D 4 HOH A 81 356 94 HOH HOH . D 4 HOH A 82 357 95 HOH HOH . D 4 HOH A 83 358 96 HOH HOH . D 4 HOH A 84 359 97 HOH HOH . D 4 HOH A 85 360 98 HOH HOH . D 4 HOH A 86 361 99 HOH HOH . D 4 HOH A 87 362 100 HOH HOH . D 4 HOH A 88 363 101 HOH HOH . D 4 HOH A 89 364 102 HOH HOH . D 4 HOH A 90 365 103 HOH HOH . D 4 HOH A 91 366 104 HOH HOH . D 4 HOH A 92 367 105 HOH HOH . D 4 HOH A 93 368 106 HOH HOH . D 4 HOH A 94 369 107 HOH HOH . D 4 HOH A 95 370 108 HOH HOH . D 4 HOH A 96 371 109 HOH HOH . D 4 HOH A 97 372 110 HOH HOH . D 4 HOH A 98 373 111 HOH HOH . D 4 HOH A 99 374 112 HOH HOH . D 4 HOH A 100 375 113 HOH HOH . D 4 HOH A 101 376 114 HOH HOH . D 4 HOH A 102 377 115 HOH HOH . D 4 HOH A 103 378 116 HOH HOH . D 4 HOH A 104 379 117 HOH HOH . D 4 HOH A 105 380 118 HOH HOH . D 4 HOH A 106 381 119 HOH HOH . D 4 HOH A 107 382 121 HOH HOH . D 4 HOH A 108 383 122 HOH HOH . D 4 HOH A 109 384 124 HOH HOH . D 4 HOH A 110 385 125 HOH HOH . D 4 HOH A 111 386 126 HOH HOH . D 4 HOH A 112 387 127 HOH HOH . D 4 HOH A 113 388 128 HOH HOH . D 4 HOH A 114 389 129 HOH HOH . D 4 HOH A 115 390 130 HOH HOH . D 4 HOH A 116 391 131 HOH HOH . D 4 HOH A 117 392 132 HOH HOH . D 4 HOH A 118 393 133 HOH HOH . D 4 HOH A 119 394 134 HOH HOH . D 4 HOH A 120 395 135 HOH HOH . D 4 HOH A 121 396 136 HOH HOH . D 4 HOH A 122 397 137 HOH HOH . D 4 HOH A 123 398 138 HOH HOH . D 4 HOH A 124 399 139 HOH HOH . D 4 HOH A 125 400 140 HOH HOH . D 4 HOH A 126 401 142 HOH HOH . D 4 HOH A 127 402 144 HOH HOH . D 4 HOH A 128 403 145 HOH HOH . D 4 HOH A 129 404 146 HOH HOH . D 4 HOH A 130 405 147 HOH HOH . D 4 HOH A 131 406 148 HOH HOH . D 4 HOH A 132 407 149 HOH HOH . D 4 HOH A 133 408 150 HOH HOH . D 4 HOH A 134 409 151 HOH HOH . D 4 HOH A 135 410 152 HOH HOH . D 4 HOH A 136 411 153 HOH HOH . D 4 HOH A 137 412 154 HOH HOH . D 4 HOH A 138 413 155 HOH HOH . D 4 HOH A 139 414 156 HOH HOH . D 4 HOH A 140 415 158 HOH HOH . D 4 HOH A 141 416 159 HOH HOH . D 4 HOH A 142 417 160 HOH HOH . D 4 HOH A 143 418 161 HOH HOH . D 4 HOH A 144 419 162 HOH HOH . D 4 HOH A 145 420 163 HOH HOH . D 4 HOH A 146 421 164 HOH HOH . D 4 HOH A 147 422 165 HOH HOH . D 4 HOH A 148 423 166 HOH HOH . D 4 HOH A 149 424 167 HOH HOH . D 4 HOH A 150 425 168 HOH HOH . D 4 HOH A 151 426 169 HOH HOH . D 4 HOH A 152 427 170 HOH HOH . D 4 HOH A 153 428 171 HOH HOH . D 4 HOH A 154 429 172 HOH HOH . D 4 HOH A 155 430 173 HOH HOH . D 4 HOH A 156 431 174 HOH HOH . D 4 HOH A 157 432 175 HOH HOH . D 4 HOH A 158 433 176 HOH HOH . D 4 HOH A 159 434 177 HOH HOH . D 4 HOH A 160 435 178 HOH HOH . D 4 HOH A 161 436 179 HOH HOH . D 4 HOH A 162 437 180 HOH HOH . D 4 HOH A 163 438 181 HOH HOH . D 4 HOH A 164 439 182 HOH HOH . D 4 HOH A 165 440 183 HOH HOH . D 4 HOH A 166 441 184 HOH HOH . D 4 HOH A 167 442 185 HOH HOH . D 4 HOH A 168 443 186 HOH HOH . D 4 HOH A 169 444 187 HOH HOH . D 4 HOH A 170 445 188 HOH HOH . D 4 HOH A 171 446 189 HOH HOH . D 4 HOH A 172 447 190 HOH HOH . D 4 HOH A 173 448 191 HOH HOH . D 4 HOH A 174 449 192 HOH HOH . D 4 HOH A 175 450 193 HOH HOH . D 4 HOH A 176 451 194 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 45.562 26.085 4.491 0.33 27.25 ? PG ATP 274 A 1 HETATM 2 O O1G ATP . . . B 2 45.164 27.44 4.9 0.33 24.27 ? O1G ATP 274 A 1 HETATM 3 O O2G ATP . . . B 2 46.989 25.8 4.957 0.33 23.76 ? O2G ATP 274 A 1 HETATM 4 O O3G ATP . . . B 2 44.587 25.039 5.047 0.33 22.94 ? O3G ATP 274 A 1 HETATM 5 P PB ATP . . . B 2 46.415 26.531 1.674 0.33 38.61 ? PB ATP 274 A 1 HETATM 6 O O1B ATP . . . B 2 47.256 25.352 1.398 0.33 31.83 ? O1B ATP 274 A 1 HETATM 7 O O2B ATP . . . B 2 45.616 27.013 0.446 0.33 37.67 ? O2B ATP 274 A 1 HETATM 8 O O3B ATP . . . B 2 45.398 26.06 2.863 0.33 32.62 ? O3B ATP 274 A 1 HETATM 9 P PA ATP . . . B 2 46.922 29.333 1.724 0.33 40.81 ? PA ATP 274 A 1 HETATM 10 O O1A ATP . . . B 2 45.695 29.416 0.907 0.33 42.22 ? O1A ATP 274 A 1 HETATM 11 O O2A ATP . . . B 2 48.12 30.002 1.031 0.33 37.09 ? O2A ATP 274 A 1 HETATM 12 O O3A ATP . . . B 2 47.289 27.805 2.126 0.33 39.19 ? O3A ATP 274 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #