data_1U67 # _model_server_result.job_id MvucbVJDl77TKM8kpEpInA _model_server_result.datetime_utc '2024-11-28 03:25:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u67 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":601}' # _entry.id 1U67 # _exptl.entry_id 1U67 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 619.575 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING CO' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1U67 _cell.length_a 181.879 _cell.length_b 181.879 _cell.length_c 103.368 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U67 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_644 y+1,x-1,-z-1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 272.8185 -157.511834 -34.456 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NDG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 3 BMA BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG ? 661 NAG 2 n B NDG 2 B 2 NDG ? 662 NAG 3 n C NAG 1 C 1 NAG ? 671 NAG 3 n C NAG 2 C 2 NAG ? 672 NAG 3 n C BMA 3 C 3 BMA ? 673 BMA 3 n C BMA 4 C 4 BMA ? 674 BMA 2 n D NAG 1 D 1 NAG ? 681 NAG 2 n D NDG 2 D 2 NDG ? 682 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 36 A CYS 36 1_555 A SG CYS 47 A CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 37 A CYS 37 1_555 A SG CYS 159 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 41 A CYS 41 1_555 A SG CYS 57 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 59 A CYS 59 1_555 A SG CYS 69 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 A SG CYS 569 A CYS 569 1_555 A SG CYS 575 A CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 68 A ASN 68 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale2 A ND2 ASN 144 A ASN 144 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 A ND2 ASN 410 A ASN 410 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NDG . B NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.394 ? covale ? covale6 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale7 C O6 BMA . C BMA 3 1_555 C C1 BMA . C BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NDG . D NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.388 ? metalc ? metalc1 A NE2 HIS 388 A HIS 388 1_555 I CO COH . A COH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? # _chem_comp.formula 'C34 H32 Co N4 O4' _chem_comp.formula_weight 619.575 _chem_comp.id COH _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING CO' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CO NA COH sing 195 n n CO NB COH sing 196 n n CO NC COH sing 197 n n CO ND COH sing 198 n n CHA C1A COH doub 199 n n CHA C4D COH sing 200 n n CHA HHA COH sing 201 n n CHB C4A COH sing 202 n n CHB C1B COH doub 203 n n CHB HHB COH sing 204 n n CHC C4B COH doub 205 n n CHC C1C COH sing 206 n n CHC HHC COH sing 207 n n CHD C4C COH doub 208 n n CHD C1D COH sing 209 n n CHD HHD COH sing 210 n n NA C1A COH sing 211 n n NA C4A COH doub 212 n n C1A C2A COH sing 213 n n C2A C3A COH doub 214 n n C2A CAA COH sing 215 n n C3A C4A COH sing 216 n n C3A CMA COH sing 217 n n CMA HMA1 COH sing 218 n n CMA HMA2 COH sing 219 n n CMA HMA3 COH sing 220 n n CAA CBA COH sing 221 n n CAA HAA1 COH sing 222 n n CAA HAA2 COH sing 223 n n CBA CGA COH sing 224 n n CBA HBA1 COH sing 225 n n CBA HBA2 COH sing 226 n n CGA O1A COH doub 227 n n CGA O2A COH sing 228 n n O2A H2A COH sing 229 n n NB C1B COH sing 230 n n NB C4B COH sing 231 n n C1B C2B COH sing 232 n n C2B C3B COH doub 233 n n C2B CMB COH sing 234 n n C3B C4B COH sing 235 n n C3B CAB COH sing 236 n n CMB HMB1 COH sing 237 n n CMB HMB2 COH sing 238 n n CMB HMB3 COH sing 239 n n CAB CBB COH doub 240 n n CAB HAB COH sing 241 n n CBB HBB1 COH sing 242 n n CBB HBB2 COH sing 243 n n NC C1C COH doub 244 n n NC C4C COH sing 245 n n C1C C2C COH sing 246 n n C2C C3C COH doub 247 n n C2C CMC COH sing 248 n n C3C C4C COH sing 249 n n C3C CAC COH sing 250 n n CMC HMC1 COH sing 251 n n CMC HMC2 COH sing 252 n n CMC HMC3 COH sing 253 n n CAC CBC COH doub 254 n n CAC HAC COH sing 255 n n CBC HBC1 COH sing 256 n n CBC HBC2 COH sing 257 n n ND C1D COH sing 258 n y ND C4D COH sing 259 n y C1D C2D COH doub 260 n y C2D C3D COH sing 261 n y C2D CMD COH sing 262 n n C3D C4D COH doub 263 n y C3D CAD COH sing 264 n n CMD HMD1 COH sing 265 n n CMD HMD2 COH sing 266 n n CMD HMD3 COH sing 267 n n CAD CBD COH sing 268 n n CAD HAD1 COH sing 269 n n CAD HAD2 COH sing 270 n n CBD CGD COH sing 271 n n CBD HBD1 COH sing 272 n n CBD HBD2 COH sing 273 n n CGD O1D COH doub 274 n n CGD O2D COH sing 275 n n O2D H2D COH sing 276 n n # _atom_sites.entry_id 1U67 _atom_sites.fract_transf_matrix[1][1] 0.005498 _atom_sites.fract_transf_matrix[1][2] 0.003174 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 BOG A 1 750 750 BOG BOG . F 4 BOG A 1 751 751 BOG BOG . G 4 BOG A 1 752 752 BOG BOG . H 4 BOG A 1 753 753 BOG BOG . I 5 COH A 1 601 601 COH COH . J 6 ACD A 1 700 700 ACD ACD . K 7 HOH A 1 800 800 HOH HOH . K 7 HOH A 2 801 801 HOH HOH . K 7 HOH A 3 803 803 HOH HOH . K 7 HOH A 4 804 804 HOH HOH . K 7 HOH A 5 805 805 HOH HOH . K 7 HOH A 6 806 806 HOH HOH . K 7 HOH A 7 807 807 HOH HOH . K 7 HOH A 8 808 808 HOH HOH . K 7 HOH A 9 809 809 HOH HOH . K 7 HOH A 10 810 810 HOH HOH . K 7 HOH A 11 811 811 HOH HOH . K 7 HOH A 12 812 812 HOH HOH . K 7 HOH A 13 813 813 HOH HOH . K 7 HOH A 14 814 814 HOH HOH . K 7 HOH A 15 815 815 HOH HOH . K 7 HOH A 16 816 816 HOH HOH . K 7 HOH A 17 817 817 HOH HOH . K 7 HOH A 18 818 818 HOH HOH . K 7 HOH A 19 819 819 HOH HOH . K 7 HOH A 20 820 820 HOH HOH . K 7 HOH A 21 821 821 HOH HOH . K 7 HOH A 22 822 822 HOH HOH . K 7 HOH A 23 823 823 HOH HOH . K 7 HOH A 24 824 824 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CO CO COH . . . I 5 242.106 90.721 -42.626 0.75 67.82 ? CO COH 601 A 1 HETATM 2 C CHA COH . . . I 5 239.121 90.859 -41.132 0.75 67.82 ? CHA COH 601 A 1 HETATM 3 C CHB COH . . . I 5 241.089 87.971 -44.414 0.75 67.82 ? CHB COH 601 A 1 HETATM 4 C CHC COH . . . I 5 245.109 90.527 -44.082 0.75 67.82 ? CHC COH 601 A 1 HETATM 5 C CHD COH . . . I 5 243.215 93.44 -40.787 0.75 67.82 ? CHD COH 601 A 1 HETATM 6 N NA COH . . . I 5 240.454 89.602 -42.795 0.75 67.82 ? NA COH 601 A 1 HETATM 7 C C1A COH . . . I 5 239.255 89.819 -42.069 0.75 67.82 ? C1A COH 601 A 1 HETATM 8 C C2A COH . . . I 5 238.19 88.78 -42.431 0.75 67.82 ? C2A COH 601 A 1 HETATM 9 C C3A COH . . . I 5 238.789 87.927 -43.408 0.75 67.82 ? C3A COH 601 A 1 HETATM 10 C C4A COH . . . I 5 240.2 88.511 -43.572 0.75 67.82 ? C4A COH 601 A 1 HETATM 11 C CMA COH . . . I 5 238.203 86.711 -44.13 0.75 67.82 ? CMA COH 601 A 1 HETATM 12 C CAA COH . . . I 5 236.695 88.598 -41.876 0.75 67.82 ? CAA COH 601 A 1 HETATM 13 C CBA COH . . . I 5 235.579 89.335 -42.662 0.75 67.82 ? CBA COH 601 A 1 HETATM 14 C CGA COH . . . I 5 235.693 90.86 -42.728 0.75 67.82 ? CGA COH 601 A 1 HETATM 15 O O1A COH . . . I 5 235.698 91.533 -41.653 0.75 67.82 ? O1A COH 601 A 1 HETATM 16 O O2A COH . . . I 5 235.726 91.398 -43.855 0.75 67.82 ? O2A COH 601 A 1 HETATM 17 N NB COH . . . I 5 242.894 89.512 -43.952 0.75 67.82 ? NB COH 601 A 1 HETATM 18 C C1B COH . . . I 5 242.364 88.399 -44.621 0.75 67.82 ? C1B COH 601 A 1 HETATM 19 C C2B COH . . . I 5 243.296 87.754 -45.555 0.75 67.82 ? C2B COH 601 A 1 HETATM 20 C C3B COH . . . I 5 244.442 88.478 -45.465 0.75 67.82 ? C3B COH 601 A 1 HETATM 21 C C4B COH . . . I 5 244.189 89.552 -44.475 0.75 67.82 ? C4B COH 601 A 1 HETATM 22 C CMB COH . . . I 5 243.011 86.546 -46.414 0.75 67.82 ? CMB COH 601 A 1 HETATM 23 C CAB COH . . . I 5 245.689 88.228 -46.213 0.75 67.82 ? CAB COH 601 A 1 HETATM 24 C CBB COH . . . I 5 246.436 87.062 -46.15 0.75 67.82 ? CBB COH 601 A 1 HETATM 25 N NC COH . . . I 5 243.805 91.829 -42.434 0.75 67.82 ? NC COH 601 A 1 HETATM 26 C C1C COH . . . I 5 244.954 91.566 -43.155 0.75 67.82 ? C1C COH 601 A 1 HETATM 27 C C2C COH . . . I 5 245.995 92.529 -42.814 0.75 67.82 ? C2C COH 601 A 1 HETATM 28 C C3C COH . . . I 5 245.434 93.37 -41.853 0.75 67.82 ? C3C COH 601 A 1 HETATM 29 C C4C COH . . . I 5 244.117 92.888 -41.667 0.75 67.82 ? C4C COH 601 A 1 HETATM 30 C CMC COH . . . I 5 247.42 92.599 -43.454 0.75 67.82 ? CMC COH 601 A 1 HETATM 31 C CAC COH . . . I 5 245.978 94.493 -41.142 0.75 67.82 ? CAC COH 601 A 1 HETATM 32 C CBC COH . . . I 5 246.609 95.658 -41.691 0.75 67.82 ? CBC COH 601 A 1 HETATM 33 N ND COH . . . I 5 241.37 91.92 -41.249 0.75 67.82 ? ND COH 601 A 1 HETATM 34 C C1D COH . . . I 5 241.884 92.97 -40.577 0.75 67.82 ? C1D COH 601 A 1 HETATM 35 C C2D COH . . . I 5 240.865 93.581 -39.581 0.75 67.82 ? C2D COH 601 A 1 HETATM 36 C C3D COH . . . I 5 239.752 92.817 -39.741 0.75 67.82 ? C3D COH 601 A 1 HETATM 37 C C4D COH . . . I 5 240.03 91.814 -40.729 0.75 67.82 ? C4D COH 601 A 1 HETATM 38 C CMD COH . . . I 5 241.198 94.781 -38.689 0.75 67.82 ? CMD COH 601 A 1 HETATM 39 C CAD COH . . . I 5 238.355 92.99 -39.082 0.75 67.82 ? CAD COH 601 A 1 HETATM 40 C CBD COH . . . I 5 238.099 92.105 -37.847 0.75 67.82 ? CBD COH 601 A 1 HETATM 41 C CGD COH . . . I 5 238.797 92.542 -36.579 0.75 67.82 ? CGD COH 601 A 1 HETATM 42 O O1D COH . . . I 5 239.947 92.091 -36.327 0.75 67.82 ? O1D COH 601 A 1 HETATM 43 O O2D COH . . . I 5 238.193 93.33 -35.83 0.75 67.82 ? O2D COH 601 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #