data_1U67 # _model_server_result.job_id hwaBsih989xbanR4VrLzgg _model_server_result.datetime_utc '2024-11-24 11:04:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u67 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":700}' # _entry.id 1U67 # _exptl.entry_id 1U67 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 304.467 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ARACHIDONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1U67 _cell.length_a 181.879 _cell.length_b 181.879 _cell.length_c 103.368 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U67 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_644 y+1,x-1,-z-1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 272.8185 -157.511834 -34.456 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NDG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 3 BMA BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG ? 661 NAG 2 n B NDG 2 B 2 NDG ? 662 NAG 3 n C NAG 1 C 1 NAG ? 671 NAG 3 n C NAG 2 C 2 NAG ? 672 NAG 3 n C BMA 3 C 3 BMA ? 673 BMA 3 n C BMA 4 C 4 BMA ? 674 BMA 2 n D NAG 1 D 1 NAG ? 681 NAG 2 n D NDG 2 D 2 NDG ? 682 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 36 A CYS 36 1_555 A SG CYS 47 A CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 37 A CYS 37 1_555 A SG CYS 159 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 41 A CYS 41 1_555 A SG CYS 57 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 59 A CYS 59 1_555 A SG CYS 69 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 A SG CYS 569 A CYS 569 1_555 A SG CYS 575 A CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 68 A ASN 68 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale2 A ND2 ASN 144 A ASN 144 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 A ND2 ASN 410 A ASN 410 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NDG . B NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.394 ? covale ? covale6 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale7 C O6 BMA . C BMA 3 1_555 C C1 BMA . C BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NDG . D NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.388 ? metalc ? metalc1 A NE2 HIS 388 A HIS 388 1_555 I CO COH . A COH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? # _chem_comp.formula 'C20 H32 O2' _chem_comp.formula_weight 304.467 _chem_comp.id ACD _chem_comp.mon_nstd_flag . _chem_comp.name 'ARACHIDONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ACD sing 1 n n C1 O1 ACD doub 2 n n C1 O2 ACD sing 3 n n C2 C3 ACD sing 4 n n C2 H21 ACD sing 5 n n C2 H22 ACD sing 6 n n C3 C4 ACD sing 7 n n C3 H31 ACD sing 8 n n C3 H32 ACD sing 9 n n C4 C5 ACD sing 10 n n C4 H41 ACD sing 11 n n C4 H42 ACD sing 12 n n C5 C6 ACD doub 13 z n C5 H5 ACD sing 14 n n C6 C7 ACD sing 15 n n C6 H6 ACD sing 16 n n C7 C8 ACD sing 17 n n C7 H71 ACD sing 18 n n C7 H72 ACD sing 19 n n C8 C9 ACD doub 20 z n C8 H8 ACD sing 21 n n C9 C10 ACD sing 22 n n C9 H9 ACD sing 23 n n C10 C11 ACD sing 24 n n C10 H101 ACD sing 25 n n C10 H102 ACD sing 26 n n C11 C12 ACD doub 27 z n C11 H11 ACD sing 28 n n C12 C13 ACD sing 29 n n C12 H12 ACD sing 30 n n C13 C14 ACD sing 31 n n C13 H131 ACD sing 32 n n C13 H132 ACD sing 33 n n C14 C15 ACD doub 34 z n C14 H14 ACD sing 35 n n C15 C16 ACD sing 36 n n C15 H15 ACD sing 37 n n C16 C17 ACD sing 38 n n C16 H161 ACD sing 39 n n C16 H162 ACD sing 40 n n C17 C18 ACD sing 41 n n C17 H171 ACD sing 42 n n C17 H172 ACD sing 43 n n C18 C19 ACD sing 44 n n C18 H181 ACD sing 45 n n C18 H182 ACD sing 46 n n C19 C20 ACD sing 47 n n C19 H191 ACD sing 48 n n C19 H192 ACD sing 49 n n C20 H201 ACD sing 50 n n C20 H202 ACD sing 51 n n C20 H203 ACD sing 52 n n O2 HO2 ACD sing 53 n n # _atom_sites.entry_id 1U67 _atom_sites.fract_transf_matrix[1][1] 0.005498 _atom_sites.fract_transf_matrix[1][2] 0.003174 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 BOG A 1 750 750 BOG BOG . F 4 BOG A 1 751 751 BOG BOG . G 4 BOG A 1 752 752 BOG BOG . H 4 BOG A 1 753 753 BOG BOG . I 5 COH A 1 601 601 COH COH . J 6 ACD A 1 700 700 ACD ACD . K 7 HOH A 1 800 800 HOH HOH . K 7 HOH A 2 801 801 HOH HOH . K 7 HOH A 3 803 803 HOH HOH . K 7 HOH A 4 804 804 HOH HOH . K 7 HOH A 5 805 805 HOH HOH . K 7 HOH A 6 806 806 HOH HOH . K 7 HOH A 7 807 807 HOH HOH . K 7 HOH A 8 808 808 HOH HOH . K 7 HOH A 9 809 809 HOH HOH . K 7 HOH A 10 810 810 HOH HOH . K 7 HOH A 11 811 811 HOH HOH . K 7 HOH A 12 812 812 HOH HOH . K 7 HOH A 13 813 813 HOH HOH . K 7 HOH A 14 814 814 HOH HOH . K 7 HOH A 15 815 815 HOH HOH . K 7 HOH A 16 816 816 HOH HOH . K 7 HOH A 17 817 817 HOH HOH . K 7 HOH A 18 818 818 HOH HOH . K 7 HOH A 19 819 819 HOH HOH . K 7 HOH A 20 820 820 HOH HOH . K 7 HOH A 21 821 821 HOH HOH . K 7 HOH A 22 822 822 HOH HOH . K 7 HOH A 23 823 823 HOH HOH . K 7 HOH A 24 824 824 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ACD . . . J 6 252.784 111.357 -37.89 1 56.74 ? C1 ACD 700 A 1 HETATM 2 C C2 ACD . . . J 6 253.075 109.883 -38.034 1 56.74 ? C2 ACD 700 A 1 HETATM 3 C C3 ACD . . . J 6 254.04 109.378 -36.987 1 56.74 ? C3 ACD 700 A 1 HETATM 4 C C4 ACD . . . J 6 253.814 107.904 -36.741 1 56.74 ? C4 ACD 700 A 1 HETATM 5 C C5 ACD . . . J 6 254.159 106.889 -37.79 1 56.74 ? C5 ACD 700 A 1 HETATM 6 C C6 ACD . . . J 6 253.183 106.197 -38.499 1 56.74 ? C6 ACD 700 A 1 HETATM 7 C C7 ACD . . . J 6 251.708 106.428 -38.263 1 56.74 ? C7 ACD 700 A 1 HETATM 8 C C8 ACD . . . J 6 250.839 106.84 -39.462 1 56.74 ? C8 ACD 700 A 1 HETATM 9 C C9 ACD . . . J 6 249.68 106.15 -39.782 1 56.74 ? C9 ACD 700 A 1 HETATM 10 C C10 ACD . . . J 6 249.238 104.982 -38.97 1 56.74 ? C10 ACD 700 A 1 HETATM 11 C C11 ACD . . . J 6 248.459 103.88 -39.656 1 56.74 ? C11 ACD 700 A 1 HETATM 12 C C12 ACD . . . J 6 248.377 102.622 -39.091 1 56.74 ? C12 ACD 700 A 1 HETATM 13 C C13 ACD . . . J 6 249.076 102.32 -37.758 1 56.74 ? C13 ACD 700 A 1 HETATM 14 O O1 ACD . . . J 6 252.959 112.092 -38.877 1 56.74 ? O1 ACD 700 A 1 HETATM 15 O O2 ACD . . . J 6 252.38 111.782 -36.788 1 56.74 ? O2 ACD 700 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 15 #