data_1U67
#
_model_server_result.job_id            0Xvty4WuhdY8fv1vuoZrZw 
_model_server_result.datetime_utc      '2024-11-12 19:30:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1u67 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":750}' 
#
_entry.id    1U67 
#
_exptl.entry_id    1U67 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1U67 
_cell.length_a            181.879 
_cell.length_b            181.879 
_cell.length_c            103.368 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1U67 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_644 y+1,x-1,-z-1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 272.8185 -157.511834 -34.456 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide 
3 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NDG NAG C1 O1 . O4 HO4 . sing 
2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
4 ? 3 4 3 BMA BMA C1 O1 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG ? 661 NAG 
2 n B NDG 2 B 2 NDG ? 662 NAG 
3 n C NAG 1 C 1 NAG ? 671 NAG 
3 n C NAG 2 C 2 NAG ? 672 NAG 
3 n C BMA 3 C 3 BMA ? 673 BMA 
3 n C BMA 4 C 4 BMA ? 674 BMA 
2 n D NAG 1 D 1 NAG ? 681 NAG 
2 n D NDG 2 D 2 NDG ? 682 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 36 A CYS 36 1_555 A SG CYS 47 A CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 37 A CYS 37 1_555 A SG CYS 159 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 A SG CYS 41 A CYS 41 1_555 A SG CYS 57 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 A SG CYS 59 A CYS 59 1_555 A SG CYS 69 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf5 A SG CYS 569 A CYS 569 1_555 A SG CYS 575 A CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 A ND2 ASN 68 A ASN 68 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale2 A ND2 ASN 144 A ASN 144 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale3 A ND2 ASN 410 A ASN 410 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NDG . B NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? 
covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.394 ? 
covale ? covale6 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? 
covale ? covale7 C O6 BMA . C BMA 3 1_555 C C1 BMA . C BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? 
covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NDG . D NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.388 ? 
metalc ? metalc1 A NE2 HIS 388 A HIS 388 1_555 I CO COH . A COH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 147 n n 
C1 C2 BOG sing 148 n n 
C1 O5 BOG sing 149 n n 
C1 H1 BOG sing 150 n n 
O1 C1' BOG sing 151 n n 
C2 O2 BOG sing 152 n n 
C2 C3 BOG sing 153 n n 
C2 H2 BOG sing 154 n n 
O2 HO2 BOG sing 155 n n 
C3 O3 BOG sing 156 n n 
C3 C4 BOG sing 157 n n 
C3 H3 BOG sing 158 n n 
O3 HO3 BOG sing 159 n n 
C4 O4 BOG sing 160 n n 
C4 C5 BOG sing 161 n n 
C4 H4 BOG sing 162 n n 
O4 HO4 BOG sing 163 n n 
C5 O5 BOG sing 164 n n 
C5 C6 BOG sing 165 n n 
C5 H5 BOG sing 166 n n 
C6 O6 BOG sing 167 n n 
C6 H61 BOG sing 168 n n 
C6 H62 BOG sing 169 n n 
O6 HO6 BOG sing 170 n n 
C1' C2' BOG sing 171 n n 
C1' "H1'1" BOG sing 172 n n 
C1' "H1'2" BOG sing 173 n n 
C2' C3' BOG sing 174 n n 
C2' "H2'1" BOG sing 175 n n 
C2' "H2'2" BOG sing 176 n n 
C3' C4' BOG sing 177 n n 
C3' "H3'1" BOG sing 178 n n 
C3' "H3'2" BOG sing 179 n n 
C4' C5' BOG sing 180 n n 
C4' "H4'1" BOG sing 181 n n 
C4' "H4'2" BOG sing 182 n n 
C5' C6' BOG sing 183 n n 
C5' "H5'1" BOG sing 184 n n 
C5' "H5'2" BOG sing 185 n n 
C6' C7' BOG sing 186 n n 
C6' "H6'1" BOG sing 187 n n 
C6' "H6'2" BOG sing 188 n n 
C7' C8' BOG sing 189 n n 
C7' "H7'1" BOG sing 190 n n 
C7' "H7'2" BOG sing 191 n n 
C8' "H8'1" BOG sing 192 n n 
C8' "H8'2" BOG sing 193 n n 
C8' "H8'3" BOG sing 194 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     1U67 
_atom_sites.fract_transf_matrix[1][1]    0.005498 
_atom_sites.fract_transf_matrix[1][2]    0.003174 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006349 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009674 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 BOG A 1 750 750 BOG BOG . 
F 4 BOG A 1 751 751 BOG BOG . 
G 4 BOG A 1 752 752 BOG BOG . 
H 4 BOG A 1 753 753 BOG BOG . 
I 5 COH A 1 601 601 COH COH . 
J 6 ACD A 1 700 700 ACD ACD . 
K 7 HOH A 1 800 800 HOH HOH . 
K 7 HOH A 2 801 801 HOH HOH . 
K 7 HOH A 3 803 803 HOH HOH . 
K 7 HOH A 4 804 804 HOH HOH . 
K 7 HOH A 5 805 805 HOH HOH . 
K 7 HOH A 6 806 806 HOH HOH . 
K 7 HOH A 7 807 807 HOH HOH . 
K 7 HOH A 8 808 808 HOH HOH . 
K 7 HOH A 9 809 809 HOH HOH . 
K 7 HOH A 10 810 810 HOH HOH . 
K 7 HOH A 11 811 811 HOH HOH . 
K 7 HOH A 12 812 812 HOH HOH . 
K 7 HOH A 13 813 813 HOH HOH . 
K 7 HOH A 14 814 814 HOH HOH . 
K 7 HOH A 15 815 815 HOH HOH . 
K 7 HOH A 16 816 816 HOH HOH . 
K 7 HOH A 17 817 817 HOH HOH . 
K 7 HOH A 18 818 818 HOH HOH . 
K 7 HOH A 19 819 819 HOH HOH . 
K 7 HOH A 20 820 820 HOH HOH . 
K 7 HOH A 21 821 821 HOH HOH . 
K 7 HOH A 22 822 822 HOH HOH . 
K 7 HOH A 23 823 823 HOH HOH . 
K 7 HOH A 24 824 824 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . E 4 254.076 122.423 -51.01 1 62.62 ? C1 BOG 750 A 1 
HETATM 2 O O1 BOG . . . E 4 254.84 123.538 -51.334 1 62.62 ? O1 BOG 750 A 1 
HETATM 3 C C2 BOG . . . E 4 252.632 122.879 -50.742 1 62.62 ? C2 BOG 750 A 1 
HETATM 4 O O2 BOG . . . E 4 252.584 123.643 -49.542 1 62.62 ? O2 BOG 750 A 1 
HETATM 5 C C3 BOG . . . E 4 251.671 121.687 -50.625 1 62.62 ? C3 BOG 750 A 1 
HETATM 6 O O3 BOG . . . E 4 250.331 122.167 -50.599 1 62.62 ? O3 BOG 750 A 1 
HETATM 7 C C4 BOG . . . E 4 251.847 120.725 -51.802 1 62.62 ? C4 BOG 750 A 1 
HETATM 8 O O4 BOG . . . E 4 251.068 119.559 -51.586 1 62.62 ? O4 BOG 750 A 1 
HETATM 9 C C5 BOG . . . E 4 253.319 120.34 -51.939 1 62.62 ? C5 BOG 750 A 1 
HETATM 10 O O5 BOG . . . E 4 254.118 121.525 -52.135 1 62.62 ? O5 BOG 750 A 1 
HETATM 11 C C6 BOG . . . E 4 253.576 119.423 -53.123 1 62.62 ? C6 BOG 750 A 1 
HETATM 12 O O6 BOG . . . E 4 253.179 118.087 -52.84 1 62.62 ? O6 BOG 750 A 1 
HETATM 13 C C1' BOG . . . E 4 256.271 123.45 -51.184 1 62.62 ? C1' BOG 750 A 1 
HETATM 14 C C2' BOG . . . E 4 256.714 124.391 -50.081 1 62.62 ? C2' BOG 750 A 1 
HETATM 15 C C3' BOG . . . E 4 258.209 124.641 -50.109 1 62.62 ? C3' BOG 750 A 1 
HETATM 16 C C4' BOG . . . E 4 258.653 125.351 -48.839 1 62.62 ? C4' BOG 750 A 1 
HETATM 17 C C5' BOG . . . E 4 260.16 125.529 -48.791 1 62.62 ? C5' BOG 750 A 1 
HETATM 18 C C6' BOG . . . E 4 260.645 125.839 -47.378 1 62.62 ? C6' BOG 750 A 1 
HETATM 19 C C7' BOG . . . E 4 260.076 127.149 -46.851 1 62.62 ? C7' BOG 750 A 1 
HETATM 20 C C8' BOG . . . E 4 260.595 128.356 -47.634 1 62.62 ? C8' BOG 750 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           20 
#