data_1U67 # _model_server_result.job_id RfgPcjZptUaruh2IruLXEA _model_server_result.datetime_utc '2024-11-12 19:51:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u67 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":753}' # _entry.id 1U67 # _exptl.entry_id 1U67 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1U67 _cell.length_a 181.879 _cell.length_b 181.879 _cell.length_c 103.368 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U67 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_644 y+1,x-1,-z-1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 272.8185 -157.511834 -34.456 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NDG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 3 BMA BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG ? 661 NAG 2 n B NDG 2 B 2 NDG ? 662 NAG 3 n C NAG 1 C 1 NAG ? 671 NAG 3 n C NAG 2 C 2 NAG ? 672 NAG 3 n C BMA 3 C 3 BMA ? 673 BMA 3 n C BMA 4 C 4 BMA ? 674 BMA 2 n D NAG 1 D 1 NAG ? 681 NAG 2 n D NDG 2 D 2 NDG ? 682 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 36 A CYS 36 1_555 A SG CYS 47 A CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 37 A CYS 37 1_555 A SG CYS 159 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 41 A CYS 41 1_555 A SG CYS 57 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 59 A CYS 59 1_555 A SG CYS 69 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 A SG CYS 569 A CYS 569 1_555 A SG CYS 575 A CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 68 A ASN 68 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale2 A ND2 ASN 144 A ASN 144 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 A ND2 ASN 410 A ASN 410 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NDG . B NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.394 ? covale ? covale6 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale7 C O6 BMA . C BMA 3 1_555 C C1 BMA . C BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NDG . D NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.388 ? metalc ? metalc1 A NE2 HIS 388 A HIS 388 1_555 I CO COH . A COH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 147 n n C1 C2 BOG sing 148 n n C1 O5 BOG sing 149 n n C1 H1 BOG sing 150 n n O1 C1' BOG sing 151 n n C2 O2 BOG sing 152 n n C2 C3 BOG sing 153 n n C2 H2 BOG sing 154 n n O2 HO2 BOG sing 155 n n C3 O3 BOG sing 156 n n C3 C4 BOG sing 157 n n C3 H3 BOG sing 158 n n O3 HO3 BOG sing 159 n n C4 O4 BOG sing 160 n n C4 C5 BOG sing 161 n n C4 H4 BOG sing 162 n n O4 HO4 BOG sing 163 n n C5 O5 BOG sing 164 n n C5 C6 BOG sing 165 n n C5 H5 BOG sing 166 n n C6 O6 BOG sing 167 n n C6 H61 BOG sing 168 n n C6 H62 BOG sing 169 n n O6 HO6 BOG sing 170 n n C1' C2' BOG sing 171 n n C1' "H1'1" BOG sing 172 n n C1' "H1'2" BOG sing 173 n n C2' C3' BOG sing 174 n n C2' "H2'1" BOG sing 175 n n C2' "H2'2" BOG sing 176 n n C3' C4' BOG sing 177 n n C3' "H3'1" BOG sing 178 n n C3' "H3'2" BOG sing 179 n n C4' C5' BOG sing 180 n n C4' "H4'1" BOG sing 181 n n C4' "H4'2" BOG sing 182 n n C5' C6' BOG sing 183 n n C5' "H5'1" BOG sing 184 n n C5' "H5'2" BOG sing 185 n n C6' C7' BOG sing 186 n n C6' "H6'1" BOG sing 187 n n C6' "H6'2" BOG sing 188 n n C7' C8' BOG sing 189 n n C7' "H7'1" BOG sing 190 n n C7' "H7'2" BOG sing 191 n n C8' "H8'1" BOG sing 192 n n C8' "H8'2" BOG sing 193 n n C8' "H8'3" BOG sing 194 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1U67 _atom_sites.fract_transf_matrix[1][1] 0.005498 _atom_sites.fract_transf_matrix[1][2] 0.003174 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 BOG A 1 750 750 BOG BOG . F 4 BOG A 1 751 751 BOG BOG . G 4 BOG A 1 752 752 BOG BOG . H 4 BOG A 1 753 753 BOG BOG . I 5 COH A 1 601 601 COH COH . J 6 ACD A 1 700 700 ACD ACD . K 7 HOH A 1 800 800 HOH HOH . K 7 HOH A 2 801 801 HOH HOH . K 7 HOH A 3 803 803 HOH HOH . K 7 HOH A 4 804 804 HOH HOH . K 7 HOH A 5 805 805 HOH HOH . K 7 HOH A 6 806 806 HOH HOH . K 7 HOH A 7 807 807 HOH HOH . K 7 HOH A 8 808 808 HOH HOH . K 7 HOH A 9 809 809 HOH HOH . K 7 HOH A 10 810 810 HOH HOH . K 7 HOH A 11 811 811 HOH HOH . K 7 HOH A 12 812 812 HOH HOH . K 7 HOH A 13 813 813 HOH HOH . K 7 HOH A 14 814 814 HOH HOH . K 7 HOH A 15 815 815 HOH HOH . K 7 HOH A 16 816 816 HOH HOH . K 7 HOH A 17 817 817 HOH HOH . K 7 HOH A 18 818 818 HOH HOH . K 7 HOH A 19 819 819 HOH HOH . K 7 HOH A 20 820 820 HOH HOH . K 7 HOH A 21 821 821 HOH HOH . K 7 HOH A 22 822 822 HOH HOH . K 7 HOH A 23 823 823 HOH HOH . K 7 HOH A 24 824 824 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . H 4 268.193 119.647 -49.952 0.75 63.01 ? C1 BOG 753 A 1 HETATM 2 O O1 BOG . . . H 4 269.063 118.978 -50.804 0.75 63.01 ? O1 BOG 753 A 1 HETATM 3 C C2 BOG . . . H 4 268.962 120.184 -48.727 0.75 63.01 ? C2 BOG 753 A 1 HETATM 4 O O2 BOG . . . H 4 269.302 119.089 -47.892 0.75 63.01 ? O2 BOG 753 A 1 HETATM 5 C C3 BOG . . . H 4 268.137 121.206 -47.91 0.75 63.01 ? C3 BOG 753 A 1 HETATM 6 O O3 BOG . . . H 4 268.965 121.861 -46.961 0.75 63.01 ? O3 BOG 753 A 1 HETATM 7 C C4 BOG . . . H 4 267.491 122.242 -48.825 0.75 63.01 ? C4 BOG 753 A 1 HETATM 8 O O4 BOG . . . H 4 266.658 123.109 -48.07 0.75 63.01 ? O4 BOG 753 A 1 HETATM 9 C C5 BOG . . . H 4 266.674 121.471 -49.841 0.75 63.01 ? C5 BOG 753 A 1 HETATM 10 O O5 BOG . . . H 4 267.571 120.72 -50.684 0.75 63.01 ? O5 BOG 753 A 1 HETATM 11 C C6 BOG . . . H 4 265.748 122.29 -50.71 0.75 63.01 ? C6 BOG 753 A 1 HETATM 12 O O6 BOG . . . H 4 264.392 122.084 -50.325 0.75 63.01 ? O6 BOG 753 A 1 HETATM 13 C C1' BOG . . . H 4 269.23 117.565 -50.562 0.75 63.01 ? C1' BOG 753 A 1 HETATM 14 C C2' BOG . . . H 4 269.16 116.793 -51.876 0.75 63.01 ? C2' BOG 753 A 1 HETATM 15 C C3' BOG . . . H 4 270.35 117.078 -52.786 0.75 63.01 ? C3' BOG 753 A 1 HETATM 16 C C4' BOG . . . H 4 270.349 118.502 -53.36 0.75 63.01 ? C4' BOG 753 A 1 HETATM 17 C C5' BOG . . . H 4 271.582 118.756 -54.231 0.75 63.01 ? C5' BOG 753 A 1 HETATM 18 C C6' BOG . . . H 4 271.632 117.813 -55.44 0.75 63.01 ? C6' BOG 753 A 1 HETATM 19 C C7' BOG . . . H 4 272.889 116.937 -55.446 0.75 63.01 ? C7' BOG 753 A 1 HETATM 20 C C8' BOG . . . H 4 272.915 115.955 -54.293 0.75 63.01 ? C8' BOG 753 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 20 #