data_1U68 # _model_server_result.job_id pcZrBPbfntaD1Z42KSbykQ _model_server_result.datetime_utc '2025-02-26 13:53:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u68 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 1U68 # _exptl.entry_id 1U68 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 255.231 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-7,8-DIHYDRO-6-(1,2,3-TRIHYDROXYPROPYL)-4(1H)-PTERIDINONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1U68 _cell.length_a 60.947 _cell.length_b 60.947 _cell.length_c 123.689 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U68 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 60.947 60.947 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 60.947 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 60.947 0 5 'crystal symmetry operation' 5_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 60.947 0 123.689 6 'crystal symmetry operation' 6_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 60.947 123.689 7 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 123.689 8 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0 -1 0 -1 0 0 0 0 -1 60.947 60.947 123.689 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H13 N5 O4' _chem_comp.formula_weight 255.231 _chem_comp.id NPR _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-7,8-DIHYDRO-6-(1,2,3-TRIHYDROXYPROPYL)-4(1H)-PTERIDINONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7,8-DIHYDRONEOPTERIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 NPR sing 222 n n N1 HN11 NPR sing 223 n n N1 HN12 NPR sing 224 n n C2 N3 NPR doub 225 n y C2 N12 NPR sing 226 n y N3 C4 NPR sing 227 n y C4 O5 NPR doub 228 n n C4 C6 NPR sing 229 n y C6 N7 NPR sing 230 n n C6 C11 NPR doub 231 n y N7 C8 NPR doub 232 n n C8 C9 NPR sing 233 n n C8 C13 NPR sing 234 n n C9 N10 NPR sing 235 n n C9 H91 NPR sing 236 n n C9 H92 NPR sing 237 n n N10 C11 NPR sing 238 n n N10 H10 NPR sing 239 n n C11 N12 NPR sing 240 n y N12 H12 NPR sing 241 n n C13 O14 NPR sing 242 n n C13 C15 NPR sing 243 n n C13 H13 NPR sing 244 n n O14 H14 NPR sing 245 n n C15 O16 NPR sing 246 n n C15 C17 NPR sing 247 n n C15 H15 NPR sing 248 n n O16 H16 NPR sing 249 n n C17 O18 NPR sing 250 n n C17 H171 NPR sing 251 n n C17 H172 NPR sing 252 n n O18 H18 NPR sing 253 n n # _atom_sites.entry_id 1U68 _atom_sites.fract_transf_matrix[1][1] 0.016408 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016408 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008085 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id NPR _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1001 _pdbx_nonpoly_scheme.auth_seq_num 1001 _pdbx_nonpoly_scheme.pdb_mon_id NPR _pdbx_nonpoly_scheme.auth_mon_id NPR _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NPR . . . B 2 47.635 44.524 78.439 1 20 ? N1 NPR 1001 A 1 HETATM 2 C C2 NPR . . . B 2 47.82 45.363 77.451 1 20 ? C2 NPR 1001 A 1 HETATM 3 N N3 NPR . . . B 2 46.924 46.323 77.063 1 20 ? N3 NPR 1001 A 1 HETATM 4 C C4 NPR . . . B 2 47.126 47.192 76.023 1 20 ? C4 NPR 1001 A 1 HETATM 5 O O5 NPR . . . B 2 46.316 48.051 75.705 1 20 ? O5 NPR 1001 A 1 HETATM 6 C C6 NPR . . . B 2 48.395 47.103 75.228 1 20 ? C6 NPR 1001 A 1 HETATM 7 N N7 NPR . . . B 2 48.742 47.968 74.042 1 20 ? N7 NPR 1001 A 1 HETATM 8 C C8 NPR . . . B 2 49.947 47.792 73.406 1 20 ? C8 NPR 1001 A 1 HETATM 9 C C9 NPR . . . B 2 50.94 46.738 73.879 1 20 ? C9 NPR 1001 A 1 HETATM 10 N N10 NPR . . . B 2 50.547 45.96 75.022 1 20 ? N10 NPR 1001 A 1 HETATM 11 C C11 NPR . . . B 2 49.263 46.162 75.645 1 20 ? C11 NPR 1001 A 1 HETATM 12 N N12 NPR . . . B 2 48.974 45.274 76.768 1 20 ? N12 NPR 1001 A 1 HETATM 13 C C13 NPR . . . B 2 50.584 48.587 72.24 0 100 ? C13 NPR 1001 A 1 HETATM 14 O O14 NPR . . . B 2 50.746 49.938 72.557 0 100 ? O14 NPR 1001 A 1 HETATM 15 C C15 NPR . . . B 2 50.296 48.159 70.78 0 100 ? C15 NPR 1001 A 1 HETATM 16 O O16 NPR . . . B 2 49.659 46.902 70.753 0 100 ? O16 NPR 1001 A 1 HETATM 17 C C17 NPR . . . B 2 51.643 47.975 70.034 0 100 ? C17 NPR 1001 A 1 HETATM 18 O O18 NPR . . . B 2 51.537 47.695 68.664 0 100 ? O18 NPR 1001 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #