data_1U70
#
_model_server_result.job_id            g3QC_cqi2yRC2GoXqq84Fg 
_model_server_result.datetime_utc      '2024-11-05 06:59:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1u70 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":187}' 
#
_entry.id    1U70 
#
_exptl.entry_id    1U70 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              454.439 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            METHOTREXATE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          116.69 
_cell.angle_gamma         90 
_cell.entry_id            1U70 
_cell.length_a            42.016 
_cell.length_b            61.536 
_cell.length_c            43.572 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1U70 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H22 N8 O5' 
_chem_comp.formula_weight    454.439 
_chem_comp.id                MTX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              METHOTREXATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 MTX doub 237 n y 
N1 C8A MTX sing 238 n y 
C2 NA2 MTX sing 239 n n 
C2 N3 MTX sing 240 n y 
NA2 HN21 MTX sing 241 n n 
NA2 HN22 MTX sing 242 n n 
N3 C4 MTX doub 243 n y 
C4 NA4 MTX sing 244 n n 
C4 C4A MTX sing 245 n y 
NA4 HN41 MTX sing 246 n n 
NA4 HN42 MTX sing 247 n n 
C4A N5 MTX sing 248 n y 
C4A C8A MTX doub 249 n y 
N5 C6 MTX doub 250 n y 
C6 C7 MTX sing 251 n y 
C6 C9 MTX sing 252 n n 
C7 N8 MTX doub 253 n y 
C7 H7 MTX sing 254 n n 
N8 C8A MTX sing 255 n y 
C9 N10 MTX sing 256 n n 
C9 H91 MTX sing 257 n n 
C9 H92 MTX sing 258 n n 
N10 CM MTX sing 259 n n 
N10 C14 MTX sing 260 n n 
CM HM1 MTX sing 261 n n 
CM HM2 MTX sing 262 n n 
CM HM3 MTX sing 263 n n 
C11 C12 MTX doub 264 n y 
C11 C16 MTX sing 265 n y 
C11 C MTX sing 266 n n 
C12 C13 MTX sing 267 n y 
C12 H12 MTX sing 268 n n 
C13 C14 MTX doub 269 n y 
C13 H13 MTX sing 270 n n 
C14 C15 MTX sing 271 n y 
C15 C16 MTX doub 272 n y 
C15 H15 MTX sing 273 n n 
C16 H16 MTX sing 274 n n 
C O MTX doub 275 n n 
C N MTX sing 276 n n 
N CA MTX sing 277 n n 
N HN MTX sing 278 n n 
CA CT MTX sing 279 n n 
CA CB MTX sing 280 n n 
CA HA MTX sing 281 n n 
CT O1 MTX doub 282 n n 
CT O2 MTX sing 283 n n 
O2 HO2 MTX sing 284 n n 
CB CG MTX sing 285 n n 
CB HB1 MTX sing 286 n n 
CB HB2 MTX sing 287 n n 
CG CD MTX sing 288 n n 
CG HG1 MTX sing 289 n n 
CG HG2 MTX sing 290 n n 
CD OE1 MTX doub 291 n n 
CD OE2 MTX sing 292 n n 
OE2 HOE2 MTX sing 293 n n 
#
_atom_sites.entry_id                     1U70 
_atom_sites.fract_transf_matrix[1][1]    0.0238 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.011965 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016251 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025688 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MTX A 1 187 187 MTX MTX . 
C 3 NDP A 1 188 188 NDP NAD . 
D 4 HOH A 1 260 260 HOH WAT . 
D 4 HOH A 2 261 261 HOH WAT . 
D 4 HOH A 3 262 262 HOH WAT . 
D 4 HOH A 4 263 263 HOH WAT . 
D 4 HOH A 5 264 264 HOH WAT . 
D 4 HOH A 6 265 265 HOH WAT . 
D 4 HOH A 7 266 266 HOH WAT . 
D 4 HOH A 8 267 267 HOH WAT . 
D 4 HOH A 9 268 268 HOH WAT . 
D 4 HOH A 10 269 269 HOH WAT . 
D 4 HOH A 11 270 270 HOH WAT . 
D 4 HOH A 12 271 271 HOH WAT . 
D 4 HOH A 13 272 272 HOH WAT . 
D 4 HOH A 14 273 273 HOH WAT . 
D 4 HOH A 15 274 274 HOH WAT . 
D 4 HOH A 16 275 275 HOH WAT . 
D 4 HOH A 17 276 276 HOH WAT . 
D 4 HOH A 18 277 277 HOH WAT . 
D 4 HOH A 19 278 278 HOH WAT . 
D 4 HOH A 20 279 279 HOH WAT . 
D 4 HOH A 21 280 280 HOH WAT . 
D 4 HOH A 22 281 281 HOH WAT . 
D 4 HOH A 23 282 282 HOH WAT . 
D 4 HOH A 24 283 283 HOH WAT . 
D 4 HOH A 25 284 284 HOH WAT . 
D 4 HOH A 26 285 285 HOH WAT . 
D 4 HOH A 27 286 286 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MTX . . . B 2 -1.065 4.843 14.381 1 13 ? N1 MTX 187 A 1 
HETATM 2 C C2 MTX . . . B 2 0.101 4.692 13.77 1 13.44 ? C2 MTX 187 A 1 
HETATM 3 N NA2 MTX . . . B 2 0.92 5.626 13.553 1 14.3 ? NA2 MTX 187 A 1 
HETATM 4 N N3 MTX . . . B 2 0.471 3.394 13.32 1 15.39 ? N3 MTX 187 A 1 
HETATM 5 C C4 MTX . . . B 2 -0.297 2.258 13.462 1 17.88 ? C4 MTX 187 A 1 
HETATM 6 N NA4 MTX . . . B 2 0.115 1.136 13.027 1 16.47 ? NA4 MTX 187 A 1 
HETATM 7 C C4A MTX . . . B 2 -1.612 2.429 14.137 1 16.05 ? C4A MTX 187 A 1 
HETATM 8 N N5 MTX . . . B 2 -2.486 1.316 14.244 1 18.67 ? N5 MTX 187 A 1 
HETATM 9 C C6 MTX . . . B 2 -3.728 1.521 14.821 1 20.83 ? C6 MTX 187 A 1 
HETATM 10 C C7 MTX . . . B 2 -4.03 2.85 15.277 1 22.62 ? C7 MTX 187 A 1 
HETATM 11 N N8 MTX . . . B 2 -3.221 3.929 15.183 1 19.25 ? N8 MTX 187 A 1 
HETATM 12 C C8A MTX . . . B 2 -1.951 3.694 14.574 1 17.3 ? C8A MTX 187 A 1 
HETATM 13 C C9 MTX . . . B 2 -4.693 0.307 14.916 1 22.16 ? C9 MTX 187 A 1 
HETATM 14 N N10 MTX . . . B 2 -6.109 0.688 15.086 1 24.96 ? N10 MTX 187 A 1 
HETATM 15 C CM MTX . . . B 2 -6.744 0.077 16.014 1 25.57 ? CM MTX 187 A 1 
HETATM 16 C C11 MTX . . . B 2 -8.452 2.721 12.059 1 27.19 ? C11 MTX 187 A 1 
HETATM 17 C C12 MTX . . . B 2 -8.966 2.398 13.307 1 25.83 ? C12 MTX 187 A 1 
HETATM 18 C C13 MTX . . . B 2 -8.2 1.737 14.254 1 25.97 ? C13 MTX 187 A 1 
HETATM 19 C C14 MTX . . . B 2 -6.804 1.345 13.981 1 25.8 ? C14 MTX 187 A 1 
HETATM 20 C C15 MTX . . . B 2 -6.26 1.644 12.739 1 24.94 ? C15 MTX 187 A 1 
HETATM 21 C C16 MTX . . . B 2 -7.084 2.329 11.779 1 26.5 ? C16 MTX 187 A 1 
HETATM 22 C C MTX . . . B 2 -9.244 3.403 11.12 1 29.37 ? C MTX 187 A 1 
HETATM 23 O O MTX . . . B 2 -10.449 3.34 11.055 1 29.7 ? O MTX 187 A 1 
HETATM 24 N N MTX . . . B 2 -8.639 4.107 10.268 1 31.54 ? N MTX 187 A 1 
HETATM 25 C CA MTX . . . B 2 -9.215 4.869 9.156 1 31.98 ? CA MTX 187 A 1 
HETATM 26 C CT MTX . . . B 2 -8.348 4.734 7.896 1 32.58 ? CT MTX 187 A 1 
HETATM 27 O O1 MTX . . . B 2 -7.104 4.564 7.963 1 28.51 ? O1 MTX 187 A 1 
HETATM 28 O O2 MTX . . . B 2 -8.935 4.807 6.789 1 32.75 ? O2 MTX 187 A 1 
HETATM 29 C CB MTX . . . B 2 -9.019 6.307 9.635 1 32.93 ? CB MTX 187 A 1 
HETATM 30 C CG MTX . . . B 2 -10.348 7.048 10.041 1 36.37 ? CG MTX 187 A 1 
HETATM 31 C CD MTX . . . B 2 -9.717 8.375 10.42 1 36.94 ? CD MTX 187 A 1 
HETATM 32 O OE1 MTX . . . B 2 -9.389 8.221 11.716 1 41.01 ? OE1 MTX 187 A 1 
HETATM 33 O OE2 MTX . . . B 2 -9.6 9.371 9.511 1 36.57 ? OE2 MTX 187 A 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#