data_1U70
#
_model_server_result.job_id            axmzmPgvRBHBv4F2Olhzkw 
_model_server_result.datetime_utc      '2024-11-26 18:52:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1u70 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":188}' 
#
_entry.id    1U70 
#
_exptl.entry_id    1U70 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          116.69 
_cell.angle_gamma         90 
_cell.entry_id            1U70 
_cell.length_a            42.016 
_cell.length_b            61.536 
_cell.length_c            43.572 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1U70 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 294 n n 
PA O2A NDP sing 295 n n 
PA O5B NDP sing 296 n n 
PA O3 NDP sing 297 n n 
O2A HOA2 NDP sing 298 n n 
O5B C5B NDP sing 299 n n 
C5B C4B NDP sing 300 n n 
C5B H51A NDP sing 301 n n 
C5B H52A NDP sing 302 n n 
C4B O4B NDP sing 303 n n 
C4B C3B NDP sing 304 n n 
C4B H4B NDP sing 305 n n 
O4B C1B NDP sing 306 n n 
C3B O3B NDP sing 307 n n 
C3B C2B NDP sing 308 n n 
C3B H3B NDP sing 309 n n 
O3B HO3A NDP sing 310 n n 
C2B O2B NDP sing 311 n n 
C2B C1B NDP sing 312 n n 
C2B H2B NDP sing 313 n n 
O2B P2B NDP sing 314 n n 
C1B N9A NDP sing 315 n n 
C1B H1B NDP sing 316 n n 
N9A C8A NDP sing 317 n y 
N9A C4A NDP sing 318 n y 
C8A N7A NDP doub 319 n y 
C8A H8A NDP sing 320 n n 
N7A C5A NDP sing 321 n y 
C5A C6A NDP sing 322 n y 
C5A C4A NDP doub 323 n y 
C6A N6A NDP sing 324 n n 
C6A N1A NDP doub 325 n y 
N6A H61A NDP sing 326 n n 
N6A H62A NDP sing 327 n n 
N1A C2A NDP sing 328 n y 
C2A N3A NDP doub 329 n y 
C2A H2A NDP sing 330 n n 
N3A C4A NDP sing 331 n y 
O3 PN NDP sing 332 n n 
PN O1N NDP doub 333 n n 
PN O2N NDP sing 334 n n 
PN O5D NDP sing 335 n n 
O2N H21N NDP sing 336 n n 
O5D C5D NDP sing 337 n n 
C5D C4D NDP sing 338 n n 
C5D H51N NDP sing 339 n n 
C5D H52N NDP sing 340 n n 
C4D O4D NDP sing 341 n n 
C4D C3D NDP sing 342 n n 
C4D H4D NDP sing 343 n n 
O4D C1D NDP sing 344 n n 
C3D O3D NDP sing 345 n n 
C3D C2D NDP sing 346 n n 
C3D H3D NDP sing 347 n n 
O3D HO3N NDP sing 348 n n 
C2D O2D NDP sing 349 n n 
C2D C1D NDP sing 350 n n 
C2D H2D NDP sing 351 n n 
O2D HO2N NDP sing 352 n n 
C1D N1N NDP sing 353 n n 
C1D H1D NDP sing 354 n n 
N1N C2N NDP sing 355 n n 
N1N C6N NDP sing 356 n n 
C2N C3N NDP doub 357 n n 
C2N H2N NDP sing 358 n n 
C3N C7N NDP sing 359 n n 
C3N C4N NDP sing 360 n n 
C7N O7N NDP doub 361 n n 
C7N N7N NDP sing 362 n n 
N7N H71N NDP sing 363 n n 
N7N H72N NDP sing 364 n n 
C4N C5N NDP sing 365 n n 
C4N H41N NDP sing 366 n n 
C4N H42N NDP sing 367 n n 
C5N C6N NDP doub 368 n n 
C5N H5N NDP sing 369 n n 
C6N H6N NDP sing 370 n n 
P2B O1X NDP doub 371 n n 
P2B O2X NDP sing 372 n n 
P2B O3X NDP sing 373 n n 
O2X HOP2 NDP sing 374 n n 
O3X HOP3 NDP sing 375 n n 
#
_atom_sites.entry_id                     1U70 
_atom_sites.fract_transf_matrix[1][1]    0.0238 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.011965 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016251 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025688 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MTX A 1 187 187 MTX MTX . 
C 3 NDP A 1 188 188 NDP NAD . 
D 4 HOH A 1 260 260 HOH WAT . 
D 4 HOH A 2 261 261 HOH WAT . 
D 4 HOH A 3 262 262 HOH WAT . 
D 4 HOH A 4 263 263 HOH WAT . 
D 4 HOH A 5 264 264 HOH WAT . 
D 4 HOH A 6 265 265 HOH WAT . 
D 4 HOH A 7 266 266 HOH WAT . 
D 4 HOH A 8 267 267 HOH WAT . 
D 4 HOH A 9 268 268 HOH WAT . 
D 4 HOH A 10 269 269 HOH WAT . 
D 4 HOH A 11 270 270 HOH WAT . 
D 4 HOH A 12 271 271 HOH WAT . 
D 4 HOH A 13 272 272 HOH WAT . 
D 4 HOH A 14 273 273 HOH WAT . 
D 4 HOH A 15 274 274 HOH WAT . 
D 4 HOH A 16 275 275 HOH WAT . 
D 4 HOH A 17 276 276 HOH WAT . 
D 4 HOH A 18 277 277 HOH WAT . 
D 4 HOH A 19 278 278 HOH WAT . 
D 4 HOH A 20 279 279 HOH WAT . 
D 4 HOH A 21 280 280 HOH WAT . 
D 4 HOH A 22 281 281 HOH WAT . 
D 4 HOH A 23 282 282 HOH WAT . 
D 4 HOH A 24 283 283 HOH WAT . 
D 4 HOH A 25 284 284 HOH WAT . 
D 4 HOH A 26 285 285 HOH WAT . 
D 4 HOH A 27 286 286 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . C 3 -1.986 -8.538 16.913 1 33.71 ? PA NDP 188 A 1 
HETATM 2 O O1A NDP . . . C 3 -3.307 -8.537 16.266 1 40.31 ? O1A NDP 188 A 1 
HETATM 3 O O2A NDP . . . C 3 -1.005 -7.728 16.266 1 35.17 ? O2A NDP 188 A 1 
HETATM 4 O O5B NDP . . . C 3 -1.461 -10.063 17.038 1 39.66 ? O5B NDP 188 A 1 
HETATM 5 C C5B NDP . . . C 3 -2.319 -11.034 17.66 1 33.16 ? C5B NDP 188 A 1 
HETATM 6 C C4B NDP . . . C 3 -2.813 -12.036 16.674 1 31.92 ? C4B NDP 188 A 1 
HETATM 7 O O4B NDP . . . C 3 -2.212 -11.675 15.396 1 31.19 ? O4B NDP 188 A 1 
HETATM 8 C C3B NDP . . . C 3 -2.419 -13.471 16.945 1 31.32 ? C3B NDP 188 A 1 
HETATM 9 O O3B NDP . . . C 3 -3.24 -14.178 17.92 1 31.31 ? O3B NDP 188 A 1 
HETATM 10 C C2B NDP . . . C 3 -2.474 -13.98 15.491 1 29.98 ? C2B NDP 188 A 1 
HETATM 11 O O2B NDP . . . C 3 -3.409 -14.982 14.986 1 34.44 ? O2B NDP 188 A 1 
HETATM 12 C C1B NDP . . . C 3 -1.915 -12.884 14.641 1 30.74 ? C1B NDP 188 A 1 
HETATM 13 N N9A NDP . . . C 3 -0.445 -12.936 14.362 1 30.39 ? N9A NDP 188 A 1 
HETATM 14 C C8A NDP . . . C 3 0.515 -12.107 14.867 1 32 ? C8A NDP 188 A 1 
HETATM 15 N N7A NDP . . . C 3 1.744 -12.413 14.402 1 32.82 ? N7A NDP 188 A 1 
HETATM 16 C C5A NDP . . . C 3 1.515 -13.444 13.604 1 32.23 ? C5A NDP 188 A 1 
HETATM 17 C C6A NDP . . . C 3 2.482 -14.119 12.87 1 33.24 ? C6A NDP 188 A 1 
HETATM 18 N N6A NDP . . . C 3 3.762 -13.741 12.941 1 36.02 ? N6A NDP 188 A 1 
HETATM 19 N N1A NDP . . . C 3 2.068 -15.174 12.085 1 28.88 ? N1A NDP 188 A 1 
HETATM 20 C C2A NDP . . . C 3 0.763 -15.523 12.037 1 28.89 ? C2A NDP 188 A 1 
HETATM 21 N N3A NDP . . . C 3 -0.174 -14.857 12.752 1 28.42 ? N3A NDP 188 A 1 
HETATM 22 C C4A NDP . . . C 3 0.16 -13.804 13.55 1 30.17 ? C4A NDP 188 A 1 
HETATM 23 O O3 NDP . . . C 3 -2.139 -8.19 18.484 1 42.77 ? O3 NDP 188 A 1 
HETATM 24 P PN NDP . . . C 3 -1.212 -7.717 19.707 1 42.95 ? PN NDP 188 A 1 
HETATM 25 O O1N NDP . . . C 3 0.207 -7.659 19.281 1 45.03 ? O1N NDP 188 A 1 
HETATM 26 O O2N NDP . . . C 3 -1.537 -8.495 20.925 1 44.83 ? O2N NDP 188 A 1 
HETATM 27 O O5D NDP . . . C 3 -1.673 -6.207 19.986 1 50.07 ? O5D NDP 188 A 1 
HETATM 28 C C5D NDP . . . C 3 -2.92 -5.69 19.548 1 57.2 ? C5D NDP 188 A 1 
HETATM 29 C C4D NDP . . . C 3 -3.192 -4.489 20.424 1 62.71 ? C4D NDP 188 A 1 
HETATM 30 O O4D NDP . . . C 3 -2.257 -3.435 20.101 1 64.18 ? O4D NDP 188 A 1 
HETATM 31 C C3D NDP . . . C 3 -4.608 -3.895 20.207 1 64.78 ? C3D NDP 188 A 1 
HETATM 32 O O3D NDP . . . C 3 -5.241 -3.546 21.467 1 64.92 ? O3D NDP 188 A 1 
HETATM 33 C C2D NDP . . . C 3 -4.408 -2.683 19.309 1 65.92 ? C2D NDP 188 A 1 
HETATM 34 O O2D NDP . . . C 3 -5.42 -1.68 19.433 1 68.2 ? O2D NDP 188 A 1 
HETATM 35 C C1D NDP . . . C 3 -2.983 -2.235 19.692 1 65.49 ? C1D NDP 188 A 1 
HETATM 36 N N1N NDP . . . C 3 -2.184 -1.597 18.592 1 64.62 ? N1N NDP 188 A 1 
HETATM 37 C C2N NDP . . . C 3 -1.702 -0.248 18.708 1 62.48 ? C2N NDP 188 A 1 
HETATM 38 C C3N NDP . . . C 3 -0.941 0.315 17.642 1 60.17 ? C3N NDP 188 A 1 
HETATM 39 C C7N NDP . . . C 3 -0.38 1.764 17.678 1 58.63 ? C7N NDP 188 A 1 
HETATM 40 O O7N NDP . . . C 3 0.761 1.994 17.266 1 54.85 ? O7N NDP 188 A 1 
HETATM 41 N N7N NDP . . . C 3 -1.17 2.733 18.156 1 57.79 ? N7N NDP 188 A 1 
HETATM 42 C C4N NDP . . . C 3 -0.682 -0.479 16.491 1 60.18 ? C4N NDP 188 A 1 
HETATM 43 C C5N NDP . . . C 3 -1.162 -1.806 16.385 1 59.82 ? C5N NDP 188 A 1 
HETATM 44 C C6N NDP . . . C 3 -1.91 -2.373 17.422 1 63.03 ? C6N NDP 188 A 1 
HETATM 45 P P2B NDP . . . C 3 -4.302 -15.952 15.882 1 32.46 ? P2B NDP 188 A 1 
HETATM 46 O O1X NDP . . . C 3 -3.375 -16.778 16.684 1 42.56 ? O1X NDP 188 A 1 
HETATM 47 O O2X NDP . . . C 3 -5.113 -16.815 15.008 1 40.09 ? O2X NDP 188 A 1 
HETATM 48 O O3X NDP . . . C 3 -5.217 -15.21 16.762 1 37.73 ? O3X NDP 188 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           48 
#