data_1U71 # _model_server_result.job_id bWkHA61L-_qocroBF-fArw _model_server_result.datetime_utc '2024-11-26 20:59:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u71 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":187}' # _entry.id 1U71 # _exptl.entry_id 1U71 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 325.365 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-(2,5-DIMETHOXY-BENZYL)-5-METHYL-PYRIDO[2,3-D]PYRIMIDINE-2,4-DIAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1U71 _cell.length_a 85.144 _cell.length_b 85.144 _cell.length_c 78.042 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U71 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H19 N5 O2' _chem_comp.formula_weight 325.365 _chem_comp.id MXA _chem_comp.mon_nstd_flag . _chem_comp.name 6-(2,5-DIMETHOXY-BENZYL)-5-METHYL-PYRIDO[2,3-D]PYRIMIDINE-2,4-DIAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 MXA doub 237 n y N1 C8A MXA sing 238 n y C2 N2 MXA sing 239 n n C2 N3 MXA sing 240 n y N2 HN21 MXA sing 241 n n N2 HN22 MXA sing 242 n n N3 C4 MXA doub 243 n y C4 N4 MXA sing 244 n n C4 C4A MXA sing 245 n y N4 HN41 MXA sing 246 n n N4 HN42 MXA sing 247 n n C4A C5 MXA sing 248 n y C4A C8A MXA doub 249 n y C5 C5M MXA sing 250 n n C5 C6 MXA doub 251 n y C5M H5M1 MXA sing 252 n n C5M H5M2 MXA sing 253 n n C5M H5M3 MXA sing 254 n n C6 C7 MXA sing 255 n y C6 C9 MXA sing 256 n n C7 N8 MXA doub 257 n y C7 H7 MXA sing 258 n n N8 C8A MXA sing 259 n y C9 C1' MXA sing 260 n n C9 H91 MXA sing 261 n n C9 H92 MXA sing 262 n n C1' C2' MXA doub 263 n y C1' C6' MXA sing 264 n y C2' O2' MXA sing 265 n n C2' C3' MXA sing 266 n y O2' C21 MXA sing 267 n n C21 H211 MXA sing 268 n n C21 H212 MXA sing 269 n n C21 H213 MXA sing 270 n n C3' C4' MXA doub 271 n y C3' H3' MXA sing 272 n n C4' C5' MXA sing 273 n y C4' H4' MXA sing 274 n n C5' O5' MXA sing 275 n n C5' C6' MXA doub 276 n y O5' C51 MXA sing 277 n n C51 H511 MXA sing 278 n n C51 H512 MXA sing 279 n n C51 H513 MXA sing 280 n n C6' H6' MXA sing 281 n n # _atom_sites.entry_id 1U71 _atom_sites.fract_transf_matrix[1][1] 0.011745 _atom_sites.fract_transf_matrix[1][2] 0.006781 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012814 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 188 188 SO4 SUL . C 2 SO4 A 1 189 189 SO4 SUL . D 3 MXA A 1 187 187 MXA COE . E 4 HOH A 1 190 190 HOH WAT . E 4 HOH A 2 191 191 HOH WAT . E 4 HOH A 3 192 192 HOH WAT . E 4 HOH A 4 193 193 HOH WAT . E 4 HOH A 5 194 194 HOH WAT . E 4 HOH A 6 195 195 HOH WAT . E 4 HOH A 7 196 196 HOH WAT . E 4 HOH A 8 197 197 HOH WAT . E 4 HOH A 9 198 198 HOH WAT . E 4 HOH A 10 199 199 HOH WAT . E 4 HOH A 11 200 200 HOH WAT . E 4 HOH A 12 201 201 HOH WAT . E 4 HOH A 13 202 202 HOH WAT . E 4 HOH A 14 203 203 HOH WAT . E 4 HOH A 15 204 204 HOH WAT . E 4 HOH A 16 205 205 HOH WAT . E 4 HOH A 17 206 206 HOH WAT . E 4 HOH A 18 207 207 HOH WAT . E 4 HOH A 19 208 208 HOH WAT . E 4 HOH A 20 209 209 HOH WAT . E 4 HOH A 21 210 210 HOH WAT . E 4 HOH A 22 211 211 HOH WAT . E 4 HOH A 23 212 212 HOH WAT . E 4 HOH A 24 213 213 HOH WAT . E 4 HOH A 25 214 214 HOH WAT . E 4 HOH A 26 215 215 HOH WAT . E 4 HOH A 27 216 216 HOH WAT . E 4 HOH A 28 217 217 HOH WAT . E 4 HOH A 29 218 218 HOH WAT . E 4 HOH A 30 219 219 HOH WAT . E 4 HOH A 31 220 220 HOH WAT . E 4 HOH A 32 221 221 HOH WAT . E 4 HOH A 33 222 222 HOH WAT . E 4 HOH A 34 223 223 HOH WAT . E 4 HOH A 35 224 224 HOH WAT . E 4 HOH A 36 225 225 HOH WAT . E 4 HOH A 37 226 226 HOH WAT . E 4 HOH A 38 227 227 HOH WAT . E 4 HOH A 39 228 228 HOH WAT . E 4 HOH A 40 229 229 HOH WAT . E 4 HOH A 41 230 230 HOH WAT . E 4 HOH A 42 231 231 HOH WAT . E 4 HOH A 43 232 232 HOH WAT . E 4 HOH A 44 233 233 HOH WAT . E 4 HOH A 45 234 234 HOH WAT . E 4 HOH A 46 235 235 HOH WAT . E 4 HOH A 47 236 236 HOH WAT . E 4 HOH A 48 237 237 HOH WAT . E 4 HOH A 49 238 238 HOH WAT . E 4 HOH A 50 239 239 HOH WAT . E 4 HOH A 51 240 240 HOH WAT . E 4 HOH A 52 241 241 HOH WAT . E 4 HOH A 53 242 242 HOH WAT . E 4 HOH A 54 243 243 HOH WAT . E 4 HOH A 55 244 244 HOH WAT . E 4 HOH A 56 245 245 HOH WAT . E 4 HOH A 57 246 246 HOH WAT . E 4 HOH A 58 247 247 HOH WAT . E 4 HOH A 59 248 248 HOH WAT . E 4 HOH A 60 249 249 HOH WAT . E 4 HOH A 61 250 250 HOH WAT . E 4 HOH A 62 251 251 HOH WAT . E 4 HOH A 63 252 252 HOH WAT . E 4 HOH A 64 253 253 HOH WAT . E 4 HOH A 65 254 254 HOH WAT . E 4 HOH A 66 255 255 HOH WAT . E 4 HOH A 67 256 256 HOH WAT . E 4 HOH A 68 257 257 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MXA . . . D 3 28.796 13.139 -4.319 0.5 2.21 ? N1 MXA 187 A 1 HETATM 2 C C2 MXA . . . D 3 27.596 12.644 -4.455 0.5 2 ? C2 MXA 187 A 1 HETATM 3 N N2 MXA . . . D 3 27.196 12.327 -5.7 0.5 2 ? N2 MXA 187 A 1 HETATM 4 N N3 MXA . . . D 3 26.752 12.365 -3.424 0.5 2 ? N3 MXA 187 A 1 HETATM 5 C C4 MXA . . . D 3 27.102 12.613 -2.212 0.5 2.38 ? C4 MXA 187 A 1 HETATM 6 N N4 MXA . . . D 3 26.137 12.302 -1.332 0.5 2.06 ? N4 MXA 187 A 1 HETATM 7 C C4A MXA . . . D 3 28.375 13.227 -1.915 0.5 3.6 ? C4A MXA 187 A 1 HETATM 8 C C5 MXA . . . D 3 28.903 13.607 -0.674 0.5 5.54 ? C5 MXA 187 A 1 HETATM 9 C C5M MXA . . . D 3 28.179 13.44 0.652 0.5 5.83 ? C5M MXA 187 A 1 HETATM 10 C C6 MXA . . . D 3 30.171 14.172 -0.645 0.5 7.15 ? C6 MXA 187 A 1 HETATM 11 C C7 MXA . . . D 3 30.848 14.357 -1.861 0.5 5.9 ? C7 MXA 187 A 1 HETATM 12 N N8 MXA . . . D 3 30.407 14.021 -3.042 0.5 3.72 ? N8 MXA 187 A 1 HETATM 13 C C8A MXA . . . D 3 29.188 13.455 -3.076 0.5 3.31 ? C8A MXA 187 A 1 HETATM 14 C C9 MXA . . . D 3 30.823 14.676 0.605 0.5 10.2 ? C9 MXA 187 A 1 HETATM 15 C C1' MXA . . . D 3 32.247 14.32 0.954 0.5 12.53 ? C1' MXA 187 A 1 HETATM 16 C C2' MXA . . . D 3 33.277 15.25 0.897 0.5 13.42 ? C2' MXA 187 A 1 HETATM 17 O O2' MXA . . . D 3 32.883 16.513 0.499 0.5 13.85 ? O2' MXA 187 A 1 HETATM 18 C C21 MXA . . . D 3 33.905 17.478 0.251 0.5 13.61 ? C21 MXA 187 A 1 HETATM 19 C C3' MXA . . . D 3 34.547 14.874 1.267 0.5 14.29 ? C3' MXA 187 A 1 HETATM 20 C C4' MXA . . . D 3 34.808 13.57 1.706 0.5 14.41 ? C4' MXA 187 A 1 HETATM 21 C C5' MXA . . . D 3 33.819 12.674 1.74 0.5 13.91 ? C5' MXA 187 A 1 HETATM 22 O O5' MXA . . . D 3 33.8 11.326 2.099 0.5 16.1 ? O5' MXA 187 A 1 HETATM 23 C C51 MXA . . . D 3 32.462 10.825 2.07 0.5 15.86 ? C51 MXA 187 A 1 HETATM 24 C C6' MXA . . . D 3 32.533 13.06 1.396 0.5 13.52 ? C6' MXA 187 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 24 #