data_1U72
#
_model_server_result.job_id            nRem_pyy-AgQOwVV8vpXbQ 
_model_server_result.datetime_utc      '2024-11-23 00:25:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1u72 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":188}' 
#
_entry.id    1U72 
#
_exptl.entry_id    1U72 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              454.439 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            METHOTREXATE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1U72 
_cell.length_a            87.379 
_cell.length_b            87.379 
_cell.length_c            76.721 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1U72 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H22 N8 O5' 
_chem_comp.formula_weight    454.439 
_chem_comp.id                MTX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              METHOTREXATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 MTX doub 237 n y 
N1 C8A MTX sing 238 n y 
C2 NA2 MTX sing 239 n n 
C2 N3 MTX sing 240 n y 
NA2 HN21 MTX sing 241 n n 
NA2 HN22 MTX sing 242 n n 
N3 C4 MTX doub 243 n y 
C4 NA4 MTX sing 244 n n 
C4 C4A MTX sing 245 n y 
NA4 HN41 MTX sing 246 n n 
NA4 HN42 MTX sing 247 n n 
C4A N5 MTX sing 248 n y 
C4A C8A MTX doub 249 n y 
N5 C6 MTX doub 250 n y 
C6 C7 MTX sing 251 n y 
C6 C9 MTX sing 252 n n 
C7 N8 MTX doub 253 n y 
C7 H7 MTX sing 254 n n 
N8 C8A MTX sing 255 n y 
C9 N10 MTX sing 256 n n 
C9 H91 MTX sing 257 n n 
C9 H92 MTX sing 258 n n 
N10 CM MTX sing 259 n n 
N10 C14 MTX sing 260 n n 
CM HM1 MTX sing 261 n n 
CM HM2 MTX sing 262 n n 
CM HM3 MTX sing 263 n n 
C11 C12 MTX doub 264 n y 
C11 C16 MTX sing 265 n y 
C11 C MTX sing 266 n n 
C12 C13 MTX sing 267 n y 
C12 H12 MTX sing 268 n n 
C13 C14 MTX doub 269 n y 
C13 H13 MTX sing 270 n n 
C14 C15 MTX sing 271 n y 
C15 C16 MTX doub 272 n y 
C15 H15 MTX sing 273 n n 
C16 H16 MTX sing 274 n n 
C O MTX doub 275 n n 
C N MTX sing 276 n n 
N CA MTX sing 277 n n 
N HN MTX sing 278 n n 
CA CT MTX sing 279 n n 
CA CB MTX sing 280 n n 
CA HA MTX sing 281 n n 
CT O1 MTX doub 282 n n 
CT O2 MTX sing 283 n n 
O2 HO2 MTX sing 284 n n 
CB CG MTX sing 285 n n 
CB HB1 MTX sing 286 n n 
CB HB2 MTX sing 287 n n 
CG CD MTX sing 288 n n 
CG HG1 MTX sing 289 n n 
CG HG2 MTX sing 290 n n 
CD OE1 MTX doub 291 n n 
CD OE2 MTX sing 292 n n 
OE2 HOE2 MTX sing 293 n n 
#
_atom_sites.entry_id                     1U72 
_atom_sites.fract_transf_matrix[1][1]    0.011444 
_atom_sites.fract_transf_matrix[1][2]    0.006607 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013215 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013034 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDP A 1 187 187 NDP COE . 
C 3 MTX A 1 188 187 MTX COE . 
D 4 HOH A 1 189 189 HOH HOH . 
D 4 HOH A 2 190 190 HOH HOH . 
D 4 HOH A 3 191 191 HOH HOH . 
D 4 HOH A 4 192 192 HOH HOH . 
D 4 HOH A 5 193 193 HOH HOH . 
D 4 HOH A 6 194 194 HOH HOH . 
D 4 HOH A 7 195 195 HOH HOH . 
D 4 HOH A 8 196 196 HOH HOH . 
D 4 HOH A 9 197 197 HOH HOH . 
D 4 HOH A 10 198 198 HOH HOH . 
D 4 HOH A 11 199 199 HOH HOH . 
D 4 HOH A 12 200 200 HOH HOH . 
D 4 HOH A 13 201 201 HOH HOH . 
D 4 HOH A 14 202 202 HOH HOH . 
D 4 HOH A 15 203 203 HOH HOH . 
D 4 HOH A 16 204 204 HOH HOH . 
D 4 HOH A 17 205 205 HOH HOH . 
D 4 HOH A 18 206 206 HOH HOH . 
D 4 HOH A 19 207 207 HOH HOH . 
D 4 HOH A 20 208 208 HOH HOH . 
D 4 HOH A 21 209 209 HOH HOH . 
D 4 HOH A 22 210 210 HOH HOH . 
D 4 HOH A 23 211 211 HOH HOH . 
D 4 HOH A 24 212 212 HOH HOH . 
D 4 HOH A 25 213 213 HOH HOH . 
D 4 HOH A 26 214 214 HOH HOH . 
D 4 HOH A 27 215 215 HOH HOH . 
D 4 HOH A 28 216 216 HOH HOH . 
D 4 HOH A 29 217 217 HOH HOH . 
D 4 HOH A 30 218 218 HOH HOH . 
D 4 HOH A 31 219 219 HOH HOH . 
D 4 HOH A 32 220 220 HOH HOH . 
D 4 HOH A 33 221 221 HOH HOH . 
D 4 HOH A 34 222 222 HOH HOH . 
D 4 HOH A 35 223 223 HOH HOH . 
D 4 HOH A 36 224 224 HOH HOH . 
D 4 HOH A 37 225 225 HOH HOH . 
D 4 HOH A 38 226 226 HOH HOH . 
D 4 HOH A 39 227 227 HOH HOH . 
D 4 HOH A 40 228 228 HOH HOH . 
D 4 HOH A 41 229 229 HOH HOH . 
D 4 HOH A 42 230 230 HOH HOH . 
D 4 HOH A 43 231 231 HOH HOH . 
D 4 HOH A 44 232 232 HOH HOH . 
D 4 HOH A 45 233 233 HOH HOH . 
D 4 HOH A 46 234 188 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MTX . . . C 3 28.763 12.969 -4.26 1 16.03 ? N1 MTX 188 A 1 
HETATM 2 C C2 MTX . . . C 3 27.447 12.749 -4.477 1 16.32 ? C2 MTX 188 A 1 
HETATM 3 N NA2 MTX . . . C 3 27.008 12.589 -5.695 1 17.04 ? NA2 MTX 188 A 1 
HETATM 4 N N3 MTX . . . C 3 26.55 12.642 -3.503 1 15.82 ? N3 MTX 188 A 1 
HETATM 5 C C4 MTX . . . C 3 26.935 12.765 -2.256 1 16.12 ? C4 MTX 188 A 1 
HETATM 6 N NA4 MTX . . . C 3 25.992 12.69 -1.383 1 15.21 ? NA4 MTX 188 A 1 
HETATM 7 C C4A MTX . . . C 3 28.325 13.047 -1.927 1 16.79 ? C4A MTX 188 A 1 
HETATM 8 N N5 MTX . . . C 3 28.752 13.214 -0.673 1 17.38 ? N5 MTX 188 A 1 
HETATM 9 C C6 MTX . . . C 3 30.025 13.436 -0.474 1 17.62 ? C6 MTX 188 A 1 
HETATM 10 C C7 MTX . . . C 3 30.933 13.508 -1.518 1 17.29 ? C7 MTX 188 A 1 
HETATM 11 N N8 MTX . . . C 3 30.55 13.339 -2.787 1 17.08 ? N8 MTX 188 A 1 
HETATM 12 C C8A MTX . . . C 3 29.241 13.119 -2.987 1 17.34 ? C8A MTX 188 A 1 
HETATM 13 C C9 MTX . . . C 3 30.421 13.599 0.993 1 18 ? C9 MTX 188 A 1 
HETATM 14 N N10 MTX . . . C 3 31.705 14.251 1.101 1 19.21 ? N10 MTX 188 A 1 
HETATM 15 C CM MTX . . . C 3 32.724 13.615 1.925 1 18.92 ? CM MTX 188 A 1 
HETATM 16 C C11 MTX . . . C 3 32.139 18.304 0.049 1 21.93 ? C11 MTX 188 A 1 
HETATM 17 C C12 MTX . . . C 3 30.91 17.682 -0.012 1 20.2 ? C12 MTX 188 A 1 
HETATM 18 C C13 MTX . . . C 3 30.767 16.373 0.306 1 19.97 ? C13 MTX 188 A 1 
HETATM 19 C C14 MTX . . . C 3 31.842 15.599 0.75 1 19.77 ? C14 MTX 188 A 1 
HETATM 20 C C15 MTX . . . C 3 33.088 16.237 0.795 1 20.02 ? C15 MTX 188 A 1 
HETATM 21 C C16 MTX . . . C 3 33.236 17.559 0.468 1 20.64 ? C16 MTX 188 A 1 
HETATM 22 C C MTX . . . C 3 32.279 19.746 -0.3 1 23.39 ? C MTX 188 A 1 
HETATM 23 O O MTX . . . C 3 33.254 20.296 0.254 1 23.73 ? O MTX 188 A 1 
HETATM 24 N N MTX . . . C 3 31.34 20.289 -1.069 1 25.24 ? N MTX 188 A 1 
HETATM 25 C CA MTX . . . C 3 31.237 21.612 -1.676 1 26.16 ? CA MTX 188 A 1 
HETATM 26 C CT MTX . . . C 3 29.917 22.342 -1.518 1 26.79 ? CT MTX 188 A 1 
HETATM 27 O O1 MTX . . . C 3 30.019 23.617 -1.517 1 27.16 ? O1 MTX 188 A 1 
HETATM 28 O O2 MTX . . . C 3 28.941 21.574 -1.423 1 26.49 ? O2 MTX 188 A 1 
HETATM 29 C CB MTX . . . C 3 31.613 21.492 -3.155 1 26.76 ? CB MTX 188 A 1 
HETATM 30 C CG MTX . . . C 3 33.005 22.087 -3.161 1 27.97 ? CG MTX 188 A 1 
HETATM 31 C CD MTX . . . C 3 33.683 21.657 -4.377 1 28.22 ? CD MTX 188 A 1 
HETATM 32 O OE1 MTX . . . C 3 34.726 20.885 -4.563 1 28.63 ? OE1 MTX 188 A 1 
HETATM 33 O OE2 MTX . . . C 3 33.115 22.04 -5.507 1 28.92 ? OE2 MTX 188 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#