data_1U8A # _model_server_result.job_id GUgHawBP8MQKbaF_5MY6Qg _model_server_result.datetime_utc '2024-10-20 19:45:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u8a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":180}' # _entry.id 1U8A # _exptl.entry_id 1U8A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1U8A _cell.length_a 63.7 _cell.length_b 63.7 _cell.length_c 91.6 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U8A _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 1U8A _atom_sites.fract_transf_matrix[1][1] 0.015699 _atom_sites.fract_transf_matrix[1][2] 0.009064 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010917 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 190 190 CL CL . C 2 CL A 1 191 191 CL CL . D 2 CL A 1 192 192 CL CL . E 3 ADP A 1 180 180 ADP ADP . F 4 SKM A 1 181 181 SKM SKM . G 5 HOH A 1 193 1 HOH HOH . G 5 HOH A 2 194 2 HOH HOH . G 5 HOH A 3 195 3 HOH HOH . G 5 HOH A 4 196 4 HOH HOH . G 5 HOH A 5 197 5 HOH HOH . G 5 HOH A 6 198 6 HOH HOH . G 5 HOH A 7 199 7 HOH HOH . G 5 HOH A 8 200 8 HOH HOH . G 5 HOH A 9 201 9 HOH HOH . G 5 HOH A 10 202 10 HOH HOH . G 5 HOH A 11 203 11 HOH HOH . G 5 HOH A 12 204 12 HOH HOH . G 5 HOH A 13 205 13 HOH HOH . G 5 HOH A 14 206 14 HOH HOH . G 5 HOH A 15 207 15 HOH HOH . G 5 HOH A 16 208 16 HOH HOH . G 5 HOH A 17 209 17 HOH HOH . G 5 HOH A 18 210 18 HOH HOH . G 5 HOH A 19 211 19 HOH HOH . G 5 HOH A 20 212 20 HOH HOH . G 5 HOH A 21 213 21 HOH HOH . G 5 HOH A 22 214 22 HOH HOH . G 5 HOH A 23 215 23 HOH HOH . G 5 HOH A 24 216 24 HOH HOH . G 5 HOH A 25 217 25 HOH HOH . G 5 HOH A 26 218 26 HOH HOH . G 5 HOH A 27 219 27 HOH HOH . G 5 HOH A 28 220 28 HOH HOH . G 5 HOH A 29 221 29 HOH HOH . G 5 HOH A 30 222 30 HOH HOH . G 5 HOH A 31 223 31 HOH HOH . G 5 HOH A 32 224 32 HOH HOH . G 5 HOH A 33 225 33 HOH HOH . G 5 HOH A 34 226 34 HOH HOH . G 5 HOH A 35 227 35 HOH HOH . G 5 HOH A 36 228 36 HOH HOH . G 5 HOH A 37 229 37 HOH HOH . G 5 HOH A 38 230 38 HOH HOH . G 5 HOH A 39 231 39 HOH HOH . G 5 HOH A 40 232 40 HOH HOH . G 5 HOH A 41 233 41 HOH HOH . G 5 HOH A 42 234 42 HOH HOH . G 5 HOH A 43 235 43 HOH HOH . G 5 HOH A 44 236 44 HOH HOH . G 5 HOH A 45 237 45 HOH HOH . G 5 HOH A 46 238 46 HOH HOH . G 5 HOH A 47 239 47 HOH HOH . G 5 HOH A 48 240 48 HOH HOH . G 5 HOH A 49 241 49 HOH HOH . G 5 HOH A 50 242 50 HOH HOH . G 5 HOH A 51 243 51 HOH HOH . G 5 HOH A 52 244 52 HOH HOH . G 5 HOH A 53 245 53 HOH HOH . G 5 HOH A 54 246 54 HOH HOH . G 5 HOH A 55 247 55 HOH HOH . G 5 HOH A 56 248 56 HOH HOH . G 5 HOH A 57 249 57 HOH HOH . G 5 HOH A 58 250 58 HOH HOH . G 5 HOH A 59 251 59 HOH HOH . G 5 HOH A 60 252 60 HOH HOH . G 5 HOH A 61 253 61 HOH HOH . G 5 HOH A 62 254 62 HOH HOH . G 5 HOH A 63 255 63 HOH HOH . G 5 HOH A 64 256 64 HOH HOH . G 5 HOH A 65 257 65 HOH HOH . G 5 HOH A 66 258 66 HOH HOH . G 5 HOH A 67 259 67 HOH HOH . G 5 HOH A 68 260 68 HOH HOH . G 5 HOH A 69 261 69 HOH HOH . G 5 HOH A 70 262 70 HOH HOH . G 5 HOH A 71 263 71 HOH HOH . G 5 HOH A 72 264 72 HOH HOH . G 5 HOH A 73 265 73 HOH HOH . G 5 HOH A 74 266 74 HOH HOH . G 5 HOH A 75 267 75 HOH HOH . G 5 HOH A 76 268 76 HOH HOH . G 5 HOH A 77 269 77 HOH HOH . G 5 HOH A 78 270 78 HOH HOH . G 5 HOH A 79 271 79 HOH HOH . G 5 HOH A 80 272 80 HOH HOH . G 5 HOH A 81 273 81 HOH HOH . G 5 HOH A 82 274 82 HOH HOH . G 5 HOH A 83 275 83 HOH HOH . G 5 HOH A 84 276 84 HOH HOH . G 5 HOH A 85 277 85 HOH HOH . G 5 HOH A 86 278 86 HOH HOH . G 5 HOH A 87 279 87 HOH HOH . G 5 HOH A 88 280 88 HOH HOH . G 5 HOH A 89 281 89 HOH HOH . G 5 HOH A 90 282 90 HOH HOH . G 5 HOH A 91 283 91 HOH HOH . G 5 HOH A 92 284 92 HOH HOH . G 5 HOH A 93 285 93 HOH HOH . G 5 HOH A 94 286 94 HOH HOH . G 5 HOH A 95 287 95 HOH HOH . G 5 HOH A 96 288 96 HOH HOH . G 5 HOH A 97 289 97 HOH HOH . G 5 HOH A 98 290 98 HOH HOH . G 5 HOH A 99 291 99 HOH HOH . G 5 HOH A 100 292 100 HOH HOH . G 5 HOH A 101 293 101 HOH HOH . G 5 HOH A 102 294 102 HOH HOH . G 5 HOH A 103 295 103 HOH HOH . G 5 HOH A 104 296 104 HOH HOH . G 5 HOH A 105 297 105 HOH HOH . G 5 HOH A 106 298 106 HOH HOH . G 5 HOH A 107 299 107 HOH HOH . G 5 HOH A 108 300 108 HOH HOH . G 5 HOH A 109 301 109 HOH HOH . G 5 HOH A 110 302 110 HOH HOH . G 5 HOH A 111 303 111 HOH HOH . G 5 HOH A 112 304 112 HOH HOH . G 5 HOH A 113 305 113 HOH HOH . G 5 HOH A 114 306 114 HOH HOH . G 5 HOH A 115 307 115 HOH HOH . G 5 HOH A 116 308 116 HOH HOH . G 5 HOH A 117 309 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . E 3 28.802 -32.352 28.92 1 28.15 ? PB ADP 180 A 1 HETATM 2 O O1B ADP . . . E 3 29.17 -30.928 28.747 1 28.24 ? O1B ADP 180 A 1 HETATM 3 O O2B ADP . . . E 3 29.42 -33.208 30.022 1 36.57 ? O2B ADP 180 A 1 HETATM 4 O O3B ADP . . . E 3 28.807 -33.148 27.491 1 28.15 ? O3B ADP 180 A 1 HETATM 5 P PA ADP . . . E 3 26.118 -33.36 28.772 1 34.33 ? PA ADP 180 A 1 HETATM 6 O O1A ADP . . . E 3 25.773 -32.985 27.358 1 33.33 ? O1A ADP 180 A 1 HETATM 7 O O2A ADP . . . E 3 26.472 -34.797 29.071 1 27.41 ? O2A ADP 180 A 1 HETATM 8 O O3A ADP . . . E 3 27.277 -32.446 29.297 1 44.86 ? O3A ADP 180 A 1 HETATM 9 O O5' ADP . . . E 3 24.912 -32.851 29.719 1 38.77 ? O5' ADP 180 A 1 HETATM 10 C C5' ADP . . . E 3 24.86 -33.356 31.117 1 35.85 ? C5' ADP 180 A 1 HETATM 11 C C4' ADP . . . E 3 23.369 -33.511 31.539 1 32.96 ? C4' ADP 180 A 1 HETATM 12 O O4' ADP . . . E 3 22.676 -32.227 31.55 1 31.63 ? O4' ADP 180 A 1 HETATM 13 C C3' ADP . . . E 3 22.494 -34.365 30.603 1 29.67 ? C3' ADP 180 A 1 HETATM 14 O O3' ADP . . . E 3 21.689 -35.353 31.322 1 36.3 ? O3' ADP 180 A 1 HETATM 15 C C2' ADP . . . E 3 21.576 -33.399 29.838 1 31.34 ? C2' ADP 180 A 1 HETATM 16 O O2' ADP . . . E 3 20.299 -33.963 29.502 1 35.2 ? O2' ADP 180 A 1 HETATM 17 C C1' ADP . . . E 3 21.452 -32.238 30.752 1 39.8 ? C1' ADP 180 A 1 HETATM 18 N N9 ADP . . . E 3 21.402 -30.853 30.155 1 28.69 ? N9 ADP 180 A 1 HETATM 19 C C8 ADP . . . E 3 22.346 -30.316 29.26 1 22.96 ? C8 ADP 180 A 1 HETATM 20 N N7 ADP . . . E 3 21.916 -29.177 28.744 1 26.05 ? N7 ADP 180 A 1 HETATM 21 C C5 ADP . . . E 3 20.778 -28.848 29.454 1 27.37 ? C5 ADP 180 A 1 HETATM 22 C C6 ADP . . . E 3 19.911 -27.703 29.429 1 21.63 ? C6 ADP 180 A 1 HETATM 23 N N6 ADP . . . E 3 20.018 -26.685 28.574 1 22.25 ? N6 ADP 180 A 1 HETATM 24 N N1 ADP . . . E 3 18.856 -27.669 30.372 1 28.59 ? N1 ADP 180 A 1 HETATM 25 C C2 ADP . . . E 3 18.564 -28.83 31.085 1 27.06 ? C2 ADP 180 A 1 HETATM 26 N N3 ADP . . . E 3 19.347 -29.946 31.227 1 24.43 ? N3 ADP 180 A 1 HETATM 27 C C4 ADP . . . E 3 20.452 -29.878 30.335 1 29.3 ? C4 ADP 180 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 27 #