data_1U9D # _model_server_result.job_id nJk-dlgRWHs_NWs35-xveA _model_server_result.datetime_utc '2024-12-15 06:57:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u9d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 1U9D # _exptl.entry_id 1U9D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1U9D _cell.length_a 66.006 _cell.length_b 66.006 _cell.length_c 47.831 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U9D _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA,PQS trimeric 3 software_defined_assembly 2 PQS trimeric 3 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,C,E 2 1,2,3 B,D,F 3 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 66.006 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 33.003 57.162873 0 4 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 33.003 57.162873 0 5 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -33.003 57.162873 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 15 A ALA 0 1_555 A N MSE 16 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C MSE 16 A MSE 1 1_555 A N PRO 17 A PRO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale3 A C PRO 68 A PRO 53 1_555 A N MSE 69 A MSE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C MSE 69 A MSE 54 1_555 A N VAL 70 A VAL 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 B C ALA 15 B ALA 0 1_555 B N MSE 16 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale6 B C MSE 16 B MSE 1 1_555 B N PRO 17 B PRO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 B C PRO 68 B PRO 53 1_555 B N MSE 69 B MSE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 B C MSE 69 B MSE 54 1_555 B N VAL 70 B VAL 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 242 n n P O2 PO4 sing 243 n n P O3 PO4 sing 244 n n P O4 PO4 sing 245 n n # _atom_sites.entry_id 1U9D _atom_sites.fract_transf_matrix[1][1] 0.01515 _atom_sites.fract_transf_matrix[1][2] 0.008747 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017494 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020907 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 202 202 PO4 PO4 . D 2 PO4 B 1 201 201 PO4 PO4 . E 3 HOH A 1 203 1 HOH HOH . E 3 HOH A 2 204 4 HOH HOH . E 3 HOH A 3 205 5 HOH HOH . E 3 HOH A 4 206 7 HOH HOH . E 3 HOH A 5 207 10 HOH HOH . E 3 HOH A 6 208 12 HOH HOH . E 3 HOH A 7 209 14 HOH HOH . E 3 HOH A 8 210 15 HOH HOH . E 3 HOH A 9 211 18 HOH HOH . E 3 HOH A 10 212 20 HOH HOH . E 3 HOH A 11 213 22 HOH HOH . E 3 HOH A 12 214 23 HOH HOH . E 3 HOH A 13 215 24 HOH HOH . E 3 HOH A 14 216 27 HOH HOH . E 3 HOH A 15 217 29 HOH HOH . E 3 HOH A 16 218 30 HOH HOH . E 3 HOH A 17 219 31 HOH HOH . E 3 HOH A 18 220 32 HOH HOH . E 3 HOH A 19 221 34 HOH HOH . E 3 HOH A 20 222 35 HOH HOH . E 3 HOH A 21 223 38 HOH HOH . E 3 HOH A 22 224 39 HOH HOH . E 3 HOH A 23 225 41 HOH HOH . E 3 HOH A 24 226 43 HOH HOH . E 3 HOH A 25 227 45 HOH HOH . E 3 HOH A 26 228 46 HOH HOH . E 3 HOH A 27 229 48 HOH HOH . E 3 HOH A 28 230 51 HOH HOH . E 3 HOH A 29 231 58 HOH HOH . E 3 HOH A 30 232 59 HOH HOH . E 3 HOH A 31 233 63 HOH HOH . E 3 HOH A 32 234 65 HOH HOH . E 3 HOH A 33 235 66 HOH HOH . E 3 HOH A 34 236 67 HOH HOH . E 3 HOH A 35 237 68 HOH HOH . E 3 HOH A 36 238 70 HOH HOH . E 3 HOH A 37 239 72 HOH HOH . E 3 HOH A 38 240 74 HOH HOH . E 3 HOH A 39 241 75 HOH HOH . E 3 HOH A 40 242 76 HOH HOH . E 3 HOH A 41 243 78 HOH HOH . E 3 HOH A 42 244 81 HOH HOH . E 3 HOH A 43 245 82 HOH HOH . E 3 HOH A 44 246 83 HOH HOH . E 3 HOH A 45 247 88 HOH HOH . E 3 HOH A 46 248 89 HOH HOH . E 3 HOH A 47 249 91 HOH HOH . E 3 HOH A 48 250 92 HOH HOH . E 3 HOH A 49 251 94 HOH HOH . E 3 HOH A 50 252 95 HOH HOH . E 3 HOH A 51 253 97 HOH HOH . E 3 HOH A 52 254 100 HOH HOH . E 3 HOH A 53 255 102 HOH HOH . E 3 HOH A 54 256 105 HOH HOH . E 3 HOH A 55 257 106 HOH HOH . E 3 HOH A 56 258 108 HOH HOH . E 3 HOH A 57 259 113 HOH HOH . E 3 HOH A 58 260 114 HOH HOH . E 3 HOH A 59 261 115 HOH HOH . E 3 HOH A 60 262 116 HOH HOH . E 3 HOH A 61 263 117 HOH HOH . E 3 HOH A 62 264 118 HOH HOH . E 3 HOH A 63 265 120 HOH HOH . E 3 HOH A 64 266 123 HOH HOH . E 3 HOH A 65 267 124 HOH HOH . E 3 HOH A 66 268 125 HOH HOH . E 3 HOH A 67 269 128 HOH HOH . E 3 HOH A 68 270 131 HOH HOH . E 3 HOH A 69 271 132 HOH HOH . E 3 HOH A 70 272 133 HOH HOH . E 3 HOH A 71 273 135 HOH HOH . E 3 HOH A 72 274 136 HOH HOH . E 3 HOH A 73 275 137 HOH HOH . E 3 HOH A 74 276 138 HOH HOH . E 3 HOH A 75 277 139 HOH HOH . E 3 HOH A 76 278 140 HOH HOH . E 3 HOH A 77 279 141 HOH HOH . E 3 HOH A 78 280 142 HOH HOH . E 3 HOH A 79 281 143 HOH HOH . E 3 HOH A 80 282 146 HOH HOH . E 3 HOH A 81 283 150 HOH HOH . E 3 HOH A 82 284 152 HOH HOH . E 3 HOH A 83 285 153 HOH HOH . F 3 HOH B 1 202 2 HOH HOH . F 3 HOH B 2 203 3 HOH HOH . F 3 HOH B 3 204 6 HOH HOH . F 3 HOH B 4 205 8 HOH HOH . F 3 HOH B 5 206 9 HOH HOH . F 3 HOH B 6 207 11 HOH HOH . F 3 HOH B 7 208 13 HOH HOH . F 3 HOH B 8 209 16 HOH HOH . F 3 HOH B 9 210 17 HOH HOH . F 3 HOH B 10 211 19 HOH HOH . F 3 HOH B 11 212 21 HOH HOH . F 3 HOH B 12 213 25 HOH HOH . F 3 HOH B 13 214 26 HOH HOH . F 3 HOH B 14 215 28 HOH HOH . F 3 HOH B 15 216 33 HOH HOH . F 3 HOH B 16 217 36 HOH HOH . F 3 HOH B 17 218 37 HOH HOH . F 3 HOH B 18 219 40 HOH HOH . F 3 HOH B 19 220 42 HOH HOH . F 3 HOH B 20 221 44 HOH HOH . F 3 HOH B 21 222 47 HOH HOH . F 3 HOH B 22 223 49 HOH HOH . F 3 HOH B 23 224 50 HOH HOH . F 3 HOH B 24 225 52 HOH HOH . F 3 HOH B 25 226 53 HOH HOH . F 3 HOH B 26 227 54 HOH HOH . F 3 HOH B 27 228 55 HOH HOH . F 3 HOH B 28 229 56 HOH HOH . F 3 HOH B 29 230 57 HOH HOH . F 3 HOH B 30 231 60 HOH HOH . F 3 HOH B 31 232 61 HOH HOH . F 3 HOH B 32 233 62 HOH HOH . F 3 HOH B 33 234 64 HOH HOH . F 3 HOH B 34 235 69 HOH HOH . F 3 HOH B 35 236 71 HOH HOH . F 3 HOH B 36 237 73 HOH HOH . F 3 HOH B 37 238 77 HOH HOH . F 3 HOH B 38 239 79 HOH HOH . F 3 HOH B 39 240 80 HOH HOH . F 3 HOH B 40 241 84 HOH HOH . F 3 HOH B 41 242 85 HOH HOH . F 3 HOH B 42 243 86 HOH HOH . F 3 HOH B 43 244 87 HOH HOH . F 3 HOH B 44 245 90 HOH HOH . F 3 HOH B 45 246 93 HOH HOH . F 3 HOH B 46 247 96 HOH HOH . F 3 HOH B 47 248 98 HOH HOH . F 3 HOH B 48 249 99 HOH HOH . F 3 HOH B 49 250 101 HOH HOH . F 3 HOH B 50 251 103 HOH HOH . F 3 HOH B 51 252 104 HOH HOH . F 3 HOH B 52 253 107 HOH HOH . F 3 HOH B 53 254 109 HOH HOH . F 3 HOH B 54 255 110 HOH HOH . F 3 HOH B 55 256 111 HOH HOH . F 3 HOH B 56 257 112 HOH HOH . F 3 HOH B 57 258 119 HOH HOH . F 3 HOH B 58 259 121 HOH HOH . F 3 HOH B 59 260 122 HOH HOH . F 3 HOH B 60 261 126 HOH HOH . F 3 HOH B 61 262 127 HOH HOH . F 3 HOH B 62 263 129 HOH HOH . F 3 HOH B 63 264 130 HOH HOH . F 3 HOH B 64 265 134 HOH HOH . F 3 HOH B 65 266 144 HOH HOH . F 3 HOH B 66 267 145 HOH HOH . F 3 HOH B 67 268 147 HOH HOH . F 3 HOH B 68 269 148 HOH HOH . F 3 HOH B 69 270 149 HOH HOH . F 3 HOH B 70 271 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 2 -8.072 21.45 80.545 1 63.05 ? P PO4 201 B 1 HETATM 2 O O1 PO4 . . . D 2 -9.098 22.066 79.622 1 63.96 ? O1 PO4 201 B 1 HETATM 3 O O2 PO4 . . . D 2 -8.476 21.738 81.959 1 61.46 ? O2 PO4 201 B 1 HETATM 4 O O3 PO4 . . . D 2 -7.911 19.973 80.22 1 64.31 ? O3 PO4 201 B 1 HETATM 5 O O4 PO4 . . . D 2 -6.722 22.043 80.369 1 63.75 ? O4 PO4 201 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #