data_1U9X # _model_server_result.job_id 8VHaWOGjq_MlNrlVj5PtIg _model_server_result.datetime_utc '2024-10-10 23:34:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1u9x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1U9X # _exptl.entry_id 1U9X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 460.575 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-CYCLOPENTYL-6-{2-[3-(4-METHYL-PIPERAZIN-1-YL)-PROPOXY]-PHENYLAMINO}-9H-PURINE-2-CARBONITRILE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1U9X _cell.length_a 63.5 _cell.length_b 63.5 _cell.length_c 116.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U9X _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 22 1_555 A SG CYS 65 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 58 A CYS 56 1_555 A SG CYS 98 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? disulf ? disulf3 A SG CYS 157 A CYS 155 1_555 A SG CYS 206 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? covale ? covale1 B C12 IHJ . A IHJ 300 1_555 A SG CYS 27 A CYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.748 ? # _chem_comp.formula 'C25 H32 N8 O' _chem_comp.formula_weight 460.575 _chem_comp.id IHJ _chem_comp.mon_nstd_flag . _chem_comp.name 9-CYCLOPENTYL-6-{2-[3-(4-METHYL-PIPERAZIN-1-YL)-PROPOXY]-PHENYLAMINO}-9H-PURINE-2-CARBONITRILE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NVP-ABJ688 # _atom_sites.entry_id 1U9X _atom_sites.fract_transf_matrix[1][1] 0.015748 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015748 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008606 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IHJ A 1 300 300 IHJ IHJ . C 3 HOH A 1 402 402 HOH HOH . C 3 HOH A 2 403 403 HOH HOH . C 3 HOH A 3 405 405 HOH HOH . C 3 HOH A 4 406 406 HOH HOH . C 3 HOH A 5 407 407 HOH HOH . C 3 HOH A 6 408 408 HOH HOH . C 3 HOH A 7 409 409 HOH HOH . C 3 HOH A 8 410 410 HOH HOH . C 3 HOH A 9 411 411 HOH HOH . C 3 HOH A 10 412 412 HOH HOH . C 3 HOH A 11 413 413 HOH HOH . C 3 HOH A 12 414 414 HOH HOH . C 3 HOH A 13 415 415 HOH HOH . C 3 HOH A 14 416 416 HOH HOH . C 3 HOH A 15 417 417 HOH HOH . C 3 HOH A 16 419 419 HOH HOH . C 3 HOH A 17 420 420 HOH HOH . C 3 HOH A 18 421 421 HOH HOH . C 3 HOH A 19 423 423 HOH HOH . C 3 HOH A 20 424 424 HOH HOH . C 3 HOH A 21 426 426 HOH HOH . C 3 HOH A 22 428 428 HOH HOH . C 3 HOH A 23 429 429 HOH HOH . C 3 HOH A 24 430 430 HOH HOH . C 3 HOH A 25 431 431 HOH HOH . C 3 HOH A 26 433 433 HOH HOH . C 3 HOH A 27 434 434 HOH HOH . C 3 HOH A 28 436 436 HOH HOH . C 3 HOH A 29 437 437 HOH HOH . C 3 HOH A 30 438 438 HOH HOH . C 3 HOH A 31 439 439 HOH HOH . C 3 HOH A 32 440 440 HOH HOH . C 3 HOH A 33 441 441 HOH HOH . C 3 HOH A 34 442 442 HOH HOH . C 3 HOH A 35 444 444 HOH HOH . C 3 HOH A 36 450 450 HOH HOH . C 3 HOH A 37 451 451 HOH HOH . C 3 HOH A 38 452 452 HOH HOH . C 3 HOH A 39 453 453 HOH HOH . C 3 HOH A 40 456 456 HOH HOH . C 3 HOH A 41 458 458 HOH HOH . C 3 HOH A 42 461 461 HOH HOH . C 3 HOH A 43 465 465 HOH HOH . C 3 HOH A 44 467 467 HOH HOH . C 3 HOH A 45 469 469 HOH HOH . C 3 HOH A 46 471 471 HOH HOH . C 3 HOH A 47 474 474 HOH HOH . C 3 HOH A 48 475 475 HOH HOH . C 3 HOH A 49 478 478 HOH HOH . C 3 HOH A 50 479 479 HOH HOH . C 3 HOH A 51 482 482 HOH HOH . C 3 HOH A 52 484 484 HOH HOH . C 3 HOH A 53 485 485 HOH HOH . C 3 HOH A 54 486 486 HOH HOH . C 3 HOH A 55 487 487 HOH HOH . C 3 HOH A 56 488 488 HOH HOH . C 3 HOH A 57 493 493 HOH HOH . C 3 HOH A 58 494 494 HOH HOH . C 3 HOH A 59 495 495 HOH HOH . C 3 HOH A 60 496 496 HOH HOH . C 3 HOH A 61 497 497 HOH HOH . C 3 HOH A 62 498 498 HOH HOH . C 3 HOH A 63 499 499 HOH HOH . C 3 HOH A 64 500 500 HOH HOH . C 3 HOH A 65 501 501 HOH HOH . C 3 HOH A 66 502 502 HOH HOH . C 3 HOH A 67 503 503 HOH HOH . C 3 HOH A 68 505 505 HOH HOH . C 3 HOH A 69 506 506 HOH HOH . C 3 HOH A 70 507 507 HOH HOH . C 3 HOH A 71 508 508 HOH HOH . C 3 HOH A 72 509 509 HOH HOH . C 3 HOH A 73 510 510 HOH HOH . C 3 HOH A 74 511 511 HOH HOH . C 3 HOH A 75 512 512 HOH HOH . C 3 HOH A 76 513 513 HOH HOH . C 3 HOH A 77 514 514 HOH HOH . C 3 HOH A 78 515 515 HOH HOH . C 3 HOH A 79 516 516 HOH HOH . C 3 HOH A 80 517 517 HOH HOH . C 3 HOH A 81 518 518 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 IHJ . . . B 2 63.229 13.497 -7.764 1 38.65 ? N01 IHJ 300 A 1 HETATM 2 C C02 IHJ . . . B 2 62.639 12.306 -8.104 1 39.45 ? C02 IHJ 300 A 1 HETATM 3 N N03 IHJ . . . B 2 61.413 12.17 -7.596 1 38.67 ? N03 IHJ 300 A 1 HETATM 4 C C05 IHJ . . . B 2 61.204 15.795 -5.625 1 26.53 ? C05 IHJ 300 A 1 HETATM 5 N N06 IHJ . . . B 2 62.316 15.429 -6.343 1 28.81 ? N06 IHJ 300 A 1 HETATM 6 C C07 IHJ . . . B 2 62.268 14.179 -6.961 1 36.53 ? C07 IHJ 300 A 1 HETATM 7 C C08 IHJ . . . B 2 61.21 13.348 -6.888 1 36.4 ? C08 IHJ 300 A 1 HETATM 8 C C09 IHJ . . . B 2 60.131 13.744 -6.163 1 34.13 ? C09 IHJ 300 A 1 HETATM 9 N N10 IHJ . . . B 2 60.128 14.981 -5.525 1 27.99 ? N10 IHJ 300 A 1 HETATM 10 N N11 IHJ . . . B 2 59.083 12.821 -6.138 1 34.19 ? N11 IHJ 300 A 1 HETATM 11 N N13 IHJ . . . B 2 62.108 17.894 -5.003 1 16.12 ? N13 IHJ 300 A 1 HETATM 12 C C16 IHJ . A . B 2 64.549 14.027 -8.115 0.5 38.82 ? C16 IHJ 300 A 1 HETATM 13 C C16 IHJ . B . B 2 64.569 13.886 -8.191 0.5 38.62 ? C16 IHJ 300 A 1 HETATM 14 C C17 IHJ . A . B 2 64.645 14.446 -9.575 0.5 40.07 ? C17 IHJ 300 A 1 HETATM 15 C C17 IHJ . B . B 2 65.253 14.946 -7.318 0.5 38.02 ? C17 IHJ 300 A 1 HETATM 16 C C18 IHJ . A . B 2 66.141 14.386 -9.838 0.5 39.28 ? C18 IHJ 300 A 1 HETATM 17 C C18 IHJ . B . B 2 65.681 16.019 -8.3 0.5 38.1 ? C18 IHJ 300 A 1 HETATM 18 C C19 IHJ . A . B 2 66.532 13.067 -9.181 0.5 38.67 ? C19 IHJ 300 A 1 HETATM 19 C C19 IHJ . B . B 2 64.622 15.911 -9.39 0.5 38.69 ? C19 IHJ 300 A 1 HETATM 20 C C20 IHJ . A . B 2 65.693 13.021 -7.895 0.5 39 ? C20 IHJ 300 A 1 HETATM 21 C C20 IHJ . B . B 2 64.557 14.425 -9.615 0.5 39.55 ? C20 IHJ 300 A 1 HETATM 22 C C30 IHJ . A . B 2 57.945 12.849 -5.317 0.5 37.22 ? C30 IHJ 300 A 1 HETATM 23 C C30 IHJ . B . B 2 57.916 12.812 -5.375 0.5 37.3 ? C30 IHJ 300 A 1 HETATM 24 C C31 IHJ . A . B 2 57.136 14.034 -5.166 0.5 35.24 ? C31 IHJ 300 A 1 HETATM 25 C C31 IHJ . B . B 2 57.098 13.984 -5.202 0.5 35.4 ? C31 IHJ 300 A 1 HETATM 26 C C32 IHJ . A . B 2 55.982 14.02 -4.321 0.5 36.53 ? C32 IHJ 300 A 1 HETATM 27 C C32 IHJ . B . B 2 55.91 13.919 -4.411 0.5 36.72 ? C32 IHJ 300 A 1 HETATM 28 C C33 IHJ . A . B 2 55.621 12.828 -3.62 0.5 35.82 ? C33 IHJ 300 A 1 HETATM 29 C C33 IHJ . B . B 2 55.529 12.684 -3.792 0.5 35.78 ? C33 IHJ 300 A 1 HETATM 30 C C34 IHJ . A . B 2 56.415 11.65 -3.763 0.5 37.16 ? C34 IHJ 300 A 1 HETATM 31 C C34 IHJ . B . B 2 56.337 11.515 -3.959 0.5 37.01 ? C34 IHJ 300 A 1 HETATM 32 C C35 IHJ . A . B 2 57.587 11.644 -4.611 0.5 38.68 ? C35 IHJ 300 A 1 HETATM 33 C C35 IHJ . B . B 2 57.539 11.564 -4.752 0.5 38.61 ? C35 IHJ 300 A 1 HETATM 34 O O40 IHJ . A . B 2 58.399 10.537 -4.791 0.5 41.42 ? O40 IHJ 300 A 1 HETATM 35 O O40 IHJ . B . B 2 58.367 10.471 -4.946 0.5 41.46 ? O40 IHJ 300 A 1 HETATM 36 C C41 IHJ . A . B 2 58.822 9.74 -3.666 0.5 44.61 ? C41 IHJ 300 A 1 HETATM 37 C C41 IHJ . B . B 2 58.281 9.62 -6.105 0.5 44.16 ? C41 IHJ 300 A 1 HETATM 38 C C42 IHJ . A . B 2 59.639 8.561 -4.195 0.5 46.09 ? C42 IHJ 300 A 1 HETATM 39 C C42 IHJ . B . B 2 58.166 8.168 -5.595 0.5 46.86 ? C42 IHJ 300 A 1 HETATM 40 C C43 IHJ . A . B 2 60.889 9.009 -4.968 0.5 50.1 ? C43 IHJ 300 A 1 HETATM 41 C C43 IHJ . B . B 2 59.367 7.669 -4.713 0.5 48.63 ? C43 IHJ 300 A 1 HETATM 42 N N51 IHJ . A . B 2 61.665 7.854 -5.476 0.5 52.19 ? N51 IHJ 300 A 1 HETATM 43 N N51 IHJ . B . B 2 60.768 7.636 -5.294 0.5 50.57 ? N51 IHJ 300 A 1 HETATM 44 C C52 IHJ . A . B 2 61.712 7.702 -6.965 0.5 52.8 ? C52 IHJ 300 A 1 HETATM 45 C C52 IHJ . B . B 2 61.437 8.937 -5.665 0.5 50.63 ? C52 IHJ 300 A 1 HETATM 46 C C53 IHJ . A . B 2 62.373 6.364 -7.37 0.5 54.15 ? C53 IHJ 300 A 1 HETATM 47 C C53 IHJ . B . B 2 62.79 8.719 -6.377 0.5 50.44 ? C53 IHJ 300 A 1 HETATM 48 N N54 IHJ . A . B 2 63.749 6.276 -6.788 0.5 54.8 ? N54 IHJ 300 A 1 HETATM 49 N N54 IHJ . B . B 2 63.693 7.938 -5.487 0.5 50.61 ? N54 IHJ 300 A 1 HETATM 50 C C55 IHJ . A . B 2 63.725 6.416 -5.294 0.5 54.56 ? C55 IHJ 300 A 1 HETATM 51 C C55 IHJ . B . B 2 63.081 6.619 -5.122 0.5 50.71 ? C55 IHJ 300 A 1 HETATM 52 C C56 IHJ . A . B 2 63.052 7.754 -4.896 0.5 52.9 ? C56 IHJ 300 A 1 HETATM 53 C C56 IHJ . B . B 2 61.712 6.821 -4.435 0.5 49.71 ? C56 IHJ 300 A 1 HETATM 54 C C61 IHJ . A . B 2 64.385 4.988 -7.169 0.5 54.77 ? C61 IHJ 300 A 1 HETATM 55 C C61 IHJ . B . B 2 64.993 7.724 -6.157 0.5 50.05 ? C61 IHJ 300 A 1 HETATM 56 C C12 IHJ . . . B 2 61.141 17.094 -4.938 1 20.84 ? C12 IHJ 300 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 56 #