data_1U9Z
#
_model_server_result.job_id            lTpx9dwM7xqBM141-kdbpw 
_model_server_result.datetime_utc      '2024-11-15 05:59:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1u9z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":5301}' 
#
_entry.id    1U9Z 
#
_exptl.entry_id    1U9Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              230.11 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RIBOSE-5-PHOSPHATE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1U9Z 
_cell.length_a            71.26 
_cell.length_b            138.25 
_cell.length_c            138.4 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1U9Z 
_symmetry.cell_setting             orthorhombic 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C5 H11 O8 P' 
_chem_comp.formula_weight    230.11 
_chem_comp.id                R5P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RIBOSE-5-PHOSPHATE 
_chem_comp.type              saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 R5P doub 316 n n 
C1 C2 R5P sing 317 n n 
C2 O2 R5P sing 318 n n 
C2 C3 R5P sing 319 n n 
C3 O3 R5P sing 320 n n 
C3 C4 R5P sing 321 n n 
C4 O4 R5P sing 322 n n 
C4 C5 R5P sing 323 n n 
C5 O5 R5P sing 324 n n 
O5 P R5P sing 325 n n 
P O1P R5P doub 326 n n 
P O2P R5P sing 327 n n 
P O3P R5P sing 328 n n 
C1 H11 R5P sing 329 n n 
C2 HC2 R5P sing 330 n n 
O2 HO2 R5P sing 331 n n 
C3 HC3 R5P sing 332 n n 
O3 HO3 R5P sing 333 n n 
C4 HC4 R5P sing 334 n n 
O4 HO4 R5P sing 335 n n 
C5 H51 R5P sing 336 n n 
C5 H52 R5P sing 337 n n 
O2P HOP2 R5P sing 338 n n 
O3P HOP3 R5P sing 339 n n 
#
_atom_sites.entry_id                     1U9Z 
_atom_sites.fract_transf_matrix[1][1]    0.014033 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007233 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007225 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 R5P A 1 5301 5301 R5P OR5 . 
F 2 R5P B 1 6301 6301 R5P OR5 . 
G 3 AMP B 1 5302 5302 AMP AMP . 
H 3 AMP B 1 6302 6302 AMP AMP . 
I 2 R5P C 1 7301 7301 R5P OR5 . 
J 3 AMP C 1 8302 8302 AMP AMP . 
K 2 R5P D 1 8301 8301 R5P OR5 . 
L 3 AMP D 1 7302 7302 AMP AMP . 
M 4 HOH A 1 452 452 HOH HOH . 
M 4 HOH A 2 5401 5401 HOH HOH . 
M 4 HOH A 3 5402 5402 HOH HOH . 
M 4 HOH A 4 5403 5403 HOH HOH . 
M 4 HOH A 5 5404 5404 HOH HOH . 
M 4 HOH A 6 5405 5405 HOH HOH . 
M 4 HOH A 7 5406 5406 HOH HOH . 
M 4 HOH A 8 5407 5407 HOH HOH . 
M 4 HOH A 9 5408 5408 HOH HOH . 
M 4 HOH A 10 5409 5409 HOH HOH . 
M 4 HOH A 11 5410 5410 HOH HOH . 
M 4 HOH A 12 5411 5411 HOH HOH . 
M 4 HOH A 13 5412 5412 HOH HOH . 
M 4 HOH A 14 5413 5413 HOH HOH . 
M 4 HOH A 15 5414 5414 HOH HOH . 
M 4 HOH A 16 5415 5415 HOH HOH . 
M 4 HOH A 17 5416 5416 HOH HOH . 
M 4 HOH A 18 5417 5417 HOH HOH . 
M 4 HOH A 19 5418 5418 HOH HOH . 
M 4 HOH A 20 5419 5419 HOH HOH . 
M 4 HOH A 21 5420 5420 HOH HOH . 
M 4 HOH A 22 5421 5421 HOH HOH . 
M 4 HOH A 23 5422 5422 HOH HOH . 
M 4 HOH A 24 5423 5423 HOH HOH . 
M 4 HOH A 25 5425 5425 HOH HOH . 
M 4 HOH A 26 5426 5426 HOH HOH . 
M 4 HOH A 27 5427 5427 HOH HOH . 
M 4 HOH A 28 5428 5428 HOH HOH . 
M 4 HOH A 29 5430 5430 HOH HOH . 
M 4 HOH A 30 5432 5432 HOH HOH . 
M 4 HOH A 31 5433 5433 HOH HOH . 
M 4 HOH A 32 5434 5434 HOH HOH . 
M 4 HOH A 33 5435 5435 HOH HOH . 
M 4 HOH A 34 5436 5436 HOH HOH . 
M 4 HOH A 35 5438 5438 HOH HOH . 
M 4 HOH A 36 5439 5439 HOH HOH . 
M 4 HOH A 37 5440 5440 HOH HOH . 
M 4 HOH A 38 5441 5441 HOH HOH . 
M 4 HOH A 39 5442 5442 HOH HOH . 
M 4 HOH A 40 5443 5443 HOH HOH . 
M 4 HOH A 41 5444 5444 HOH HOH . 
M 4 HOH A 42 5445 5445 HOH HOH . 
M 4 HOH A 43 5446 5446 HOH HOH . 
M 4 HOH A 44 5447 5447 HOH HOH . 
M 4 HOH A 45 5448 5448 HOH HOH . 
M 4 HOH A 46 5449 5449 HOH HOH . 
M 4 HOH A 47 5450 5450 HOH HOH . 
M 4 HOH A 48 5451 5451 HOH HOH . 
M 4 HOH A 49 6431 6431 HOH HOH . 
M 4 HOH A 50 8429 8429 HOH HOH . 
N 4 HOH B 1 5424 5424 HOH HOH . 
N 4 HOH B 2 5431 5431 HOH HOH . 
N 4 HOH B 3 5437 5437 HOH HOH . 
N 4 HOH B 4 6401 6401 HOH HOH . 
N 4 HOH B 5 6402 6402 HOH HOH . 
N 4 HOH B 6 6403 6403 HOH HOH . 
N 4 HOH B 7 6404 6404 HOH HOH . 
N 4 HOH B 8 6405 6405 HOH HOH . 
N 4 HOH B 9 6406 6406 HOH HOH . 
N 4 HOH B 10 6407 6407 HOH HOH . 
N 4 HOH B 11 6408 6408 HOH HOH . 
N 4 HOH B 12 6409 6409 HOH HOH . 
N 4 HOH B 13 6410 6410 HOH HOH . 
N 4 HOH B 14 6411 6411 HOH HOH . 
N 4 HOH B 15 6412 6412 HOH HOH . 
N 4 HOH B 16 6413 6413 HOH HOH . 
N 4 HOH B 17 6414 6414 HOH HOH . 
N 4 HOH B 18 6415 6415 HOH HOH . 
N 4 HOH B 19 6416 6416 HOH HOH . 
N 4 HOH B 20 6417 6417 HOH HOH . 
N 4 HOH B 21 6419 6419 HOH HOH . 
N 4 HOH B 22 6420 6420 HOH HOH . 
N 4 HOH B 23 6421 6421 HOH HOH . 
N 4 HOH B 24 6422 6422 HOH HOH . 
N 4 HOH B 25 6423 6423 HOH HOH . 
N 4 HOH B 26 6424 6424 HOH HOH . 
N 4 HOH B 27 6425 6425 HOH HOH . 
N 4 HOH B 28 6426 6426 HOH HOH . 
N 4 HOH B 29 6427 6427 HOH HOH . 
N 4 HOH B 30 6428 6428 HOH HOH . 
N 4 HOH B 31 6430 6430 HOH HOH . 
N 4 HOH B 32 6432 6432 HOH HOH . 
N 4 HOH B 33 6433 6433 HOH HOH . 
N 4 HOH B 34 6434 6434 HOH HOH . 
N 4 HOH B 35 6435 6435 HOH HOH . 
N 4 HOH B 36 6436 6436 HOH HOH . 
N 4 HOH B 37 6437 6437 HOH HOH . 
N 4 HOH B 38 6438 6438 HOH HOH . 
N 4 HOH B 39 6439 6439 HOH HOH . 
N 4 HOH B 40 6440 6440 HOH HOH . 
N 4 HOH B 41 6441 6441 HOH HOH . 
N 4 HOH B 42 6442 6442 HOH HOH . 
N 4 HOH B 43 6443 6443 HOH HOH . 
N 4 HOH B 44 6444 6444 HOH HOH . 
N 4 HOH B 45 6445 6445 HOH HOH . 
N 4 HOH B 46 6446 6446 HOH HOH . 
N 4 HOH B 47 6447 6447 HOH HOH . 
N 4 HOH B 48 6448 6448 HOH HOH . 
N 4 HOH B 49 6449 6449 HOH HOH . 
N 4 HOH B 50 6450 6450 HOH HOH . 
N 4 HOH B 51 6451 6451 HOH HOH . 
N 4 HOH B 52 7429 7429 HOH HOH . 
O 4 HOH C 1 6418 6418 HOH HOH . 
O 4 HOH C 2 6429 6429 HOH HOH . 
O 4 HOH C 3 7401 7401 HOH HOH . 
O 4 HOH C 4 7402 7402 HOH HOH . 
O 4 HOH C 5 7403 7403 HOH HOH . 
O 4 HOH C 6 7404 7404 HOH HOH . 
O 4 HOH C 7 7405 7405 HOH HOH . 
O 4 HOH C 8 7406 7406 HOH HOH . 
O 4 HOH C 9 7407 7407 HOH HOH . 
O 4 HOH C 10 7408 7408 HOH HOH . 
O 4 HOH C 11 7409 7409 HOH HOH . 
O 4 HOH C 12 7410 7410 HOH HOH . 
O 4 HOH C 13 7411 7411 HOH HOH . 
O 4 HOH C 14 7412 7412 HOH HOH . 
O 4 HOH C 15 7413 7413 HOH HOH . 
O 4 HOH C 16 7414 7414 HOH HOH . 
O 4 HOH C 17 7415 7415 HOH HOH . 
O 4 HOH C 18 7416 7416 HOH HOH . 
O 4 HOH C 19 7417 7417 HOH HOH . 
O 4 HOH C 20 7418 7418 HOH HOH . 
O 4 HOH C 21 7419 7419 HOH HOH . 
O 4 HOH C 22 7420 7420 HOH HOH . 
O 4 HOH C 23 7421 7421 HOH HOH . 
O 4 HOH C 24 7422 7422 HOH HOH . 
O 4 HOH C 25 7423 7423 HOH HOH . 
O 4 HOH C 26 7425 7425 HOH HOH . 
O 4 HOH C 27 7426 7426 HOH HOH . 
O 4 HOH C 28 7427 7427 HOH HOH . 
O 4 HOH C 29 7428 7428 HOH HOH . 
O 4 HOH C 30 7430 7430 HOH HOH . 
O 4 HOH C 31 7432 7432 HOH HOH . 
O 4 HOH C 32 7433 7433 HOH HOH . 
O 4 HOH C 33 7434 7434 HOH HOH . 
O 4 HOH C 34 7435 7435 HOH HOH . 
O 4 HOH C 35 7436 7436 HOH HOH . 
O 4 HOH C 36 7438 7438 HOH HOH . 
O 4 HOH C 37 7439 7439 HOH HOH . 
O 4 HOH C 38 7441 7441 HOH HOH . 
O 4 HOH C 39 7442 7442 HOH HOH . 
O 4 HOH C 40 7443 7443 HOH HOH . 
O 4 HOH C 41 7444 7444 HOH HOH . 
O 4 HOH C 42 7445 7445 HOH HOH . 
O 4 HOH C 43 7446 7446 HOH HOH . 
O 4 HOH C 44 7447 7447 HOH HOH . 
O 4 HOH C 45 7448 7448 HOH HOH . 
O 4 HOH C 46 7449 7449 HOH HOH . 
O 4 HOH C 47 7450 7450 HOH HOH . 
O 4 HOH C 48 7451 7451 HOH HOH . 
O 4 HOH C 49 8424 8424 HOH HOH . 
O 4 HOH C 50 8431 8431 HOH HOH . 
O 4 HOH C 51 8437 8437 HOH HOH . 
O 4 HOH C 52 8440 8440 HOH HOH . 
P 4 HOH D 1 453 453 HOH HOH . 
P 4 HOH D 2 5429 5429 HOH HOH . 
P 4 HOH D 3 7424 7424 HOH HOH . 
P 4 HOH D 4 7431 7431 HOH HOH . 
P 4 HOH D 5 7437 7437 HOH HOH . 
P 4 HOH D 6 7440 7440 HOH HOH . 
P 4 HOH D 7 8401 8401 HOH HOH . 
P 4 HOH D 8 8402 8402 HOH HOH . 
P 4 HOH D 9 8403 8403 HOH HOH . 
P 4 HOH D 10 8404 8404 HOH HOH . 
P 4 HOH D 11 8405 8405 HOH HOH . 
P 4 HOH D 12 8406 8406 HOH HOH . 
P 4 HOH D 13 8407 8407 HOH HOH . 
P 4 HOH D 14 8408 8408 HOH HOH . 
P 4 HOH D 15 8409 8409 HOH HOH . 
P 4 HOH D 16 8410 8410 HOH HOH . 
P 4 HOH D 17 8411 8411 HOH HOH . 
P 4 HOH D 18 8412 8412 HOH HOH . 
P 4 HOH D 19 8413 8413 HOH HOH . 
P 4 HOH D 20 8414 8414 HOH HOH . 
P 4 HOH D 21 8415 8415 HOH HOH . 
P 4 HOH D 22 8416 8416 HOH HOH . 
P 4 HOH D 23 8417 8417 HOH HOH . 
P 4 HOH D 24 8418 8418 HOH HOH . 
P 4 HOH D 25 8419 8419 HOH HOH . 
P 4 HOH D 26 8420 8420 HOH HOH . 
P 4 HOH D 27 8421 8421 HOH HOH . 
P 4 HOH D 28 8422 8422 HOH HOH . 
P 4 HOH D 29 8423 8423 HOH HOH . 
P 4 HOH D 30 8425 8425 HOH HOH . 
P 4 HOH D 31 8426 8426 HOH HOH . 
P 4 HOH D 32 8427 8427 HOH HOH . 
P 4 HOH D 33 8428 8428 HOH HOH . 
P 4 HOH D 34 8430 8430 HOH HOH . 
P 4 HOH D 35 8432 8432 HOH HOH . 
P 4 HOH D 36 8433 8433 HOH HOH . 
P 4 HOH D 37 8434 8434 HOH HOH . 
P 4 HOH D 38 8435 8435 HOH HOH . 
P 4 HOH D 39 8436 8436 HOH HOH . 
P 4 HOH D 40 8438 8438 HOH HOH . 
P 4 HOH D 41 8439 8439 HOH HOH . 
P 4 HOH D 42 8441 8441 HOH HOH . 
P 4 HOH D 43 8442 8442 HOH HOH . 
P 4 HOH D 44 8443 8443 HOH HOH . 
P 4 HOH D 45 8444 8444 HOH HOH . 
P 4 HOH D 46 8445 8445 HOH HOH . 
P 4 HOH D 47 8446 8446 HOH HOH . 
P 4 HOH D 48 8447 8447 HOH HOH . 
P 4 HOH D 49 8448 8448 HOH HOH . 
P 4 HOH D 50 8449 8449 HOH HOH . 
P 4 HOH D 51 8450 8450 HOH HOH . 
P 4 HOH D 52 8451 8451 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 R5P . . . E 2 13.408 34.816 30.447 1 54.1 ? C1 R5P 5301 A 1 
HETATM 2 O O1 R5P . . . E 2 14.069 33.945 30.98 1 53.95 ? O1 R5P 5301 A 1 
HETATM 3 C C2 R5P . . . E 2 13.084 36.078 31.209 1 53.42 ? C2 R5P 5301 A 1 
HETATM 4 O O2 R5P . . . E 2 12.353 35.718 32.403 1 56.12 ? O2 R5P 5301 A 1 
HETATM 5 C C3 R5P . . . E 2 12.221 37.071 30.35 1 52.08 ? C3 R5P 5301 A 1 
HETATM 6 O O3 R5P . . . E 2 13.042 37.382 29.171 1 53 ? O3 R5P 5301 A 1 
HETATM 7 C C4 R5P . . . E 2 11.907 38.368 31.153 1 50.45 ? C4 R5P 5301 A 1 
HETATM 8 O O4 R5P . . . E 2 11.106 38.049 32.263 1 48.99 ? O4 R5P 5301 A 1 
HETATM 9 C C5 R5P . . . E 2 11.228 39.487 30.292 1 49.66 ? C5 R5P 5301 A 1 
HETATM 10 O O5 R5P . . . E 2 11.245 40.767 30.934 1 48.06 ? O5 R5P 5301 A 1 
HETATM 11 P P R5P . . . E 2 11.417 42.188 30.162 1 47.77 ? P R5P 5301 A 1 
HETATM 12 O O1P R5P . . . E 2 10.559 42.184 28.821 1 48.14 ? O1P R5P 5301 A 1 
HETATM 13 O O2P R5P . . . E 2 10.932 43.309 31.154 1 45.55 ? O2P R5P 5301 A 1 
HETATM 14 O O3P R5P . . . E 2 12.813 42.45 29.779 1 48.24 ? O3P R5P 5301 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           255 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#