data_1UAZ # _model_server_result.job_id zs4D-wKHGjPPcPkfKYkWYQ _model_server_result.datetime_utc '2024-11-16 22:41:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1uaz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":255}' # _entry.id 1UAZ # _exptl.entry_id 1UAZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1UAZ _cell.length_a 128.1 _cell.length_b 128.1 _cell.length_c 117.6 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UAZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 222 A LYS 222 1_555 C C15 RET . A RET 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale2 B NZ LYS 222 B LYS 222 1_555 D C15 RET . B RET 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 275 n n C1 C6 RET sing 276 n n C1 C16 RET sing 277 n n C1 C17 RET sing 278 n n C2 C3 RET sing 279 n n C2 H21 RET sing 280 n n C2 H22 RET sing 281 n n C3 C4 RET sing 282 n n C3 H31 RET sing 283 n n C3 H32 RET sing 284 n n C4 C5 RET sing 285 n n C4 H41 RET sing 286 n n C4 H42 RET sing 287 n n C5 C6 RET doub 288 n n C5 C18 RET sing 289 n n C6 C7 RET sing 290 n n C7 C8 RET doub 291 e n C7 H7 RET sing 292 n n C8 C9 RET sing 293 n n C8 H8 RET sing 294 n n C9 C10 RET doub 295 e n C9 C19 RET sing 296 n n C10 C11 RET sing 297 n n C10 H10 RET sing 298 n n C11 C12 RET doub 299 e n C11 H11 RET sing 300 n n C12 C13 RET sing 301 n n C12 H12 RET sing 302 n n C13 C14 RET doub 303 e n C13 C20 RET sing 304 n n C14 C15 RET sing 305 n n C14 H14 RET sing 306 n n C15 O1 RET doub 307 n n C15 H15 RET sing 308 n n C16 H161 RET sing 309 n n C16 H162 RET sing 310 n n C16 H163 RET sing 311 n n C17 H171 RET sing 312 n n C17 H172 RET sing 313 n n C17 H173 RET sing 314 n n C18 H181 RET sing 315 n n C18 H182 RET sing 316 n n C18 H183 RET sing 317 n n C19 H191 RET sing 318 n n C19 H192 RET sing 319 n n C19 H193 RET sing 320 n n C20 H201 RET sing 321 n n C20 H202 RET sing 322 n n C20 H203 RET sing 323 n n # _atom_sites.entry_id 1UAZ _atom_sites.fract_transf_matrix[1][1] 0.007806 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007806 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008503 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RET A 1 255 250 RET RET . D 2 RET B 1 255 250 RET RET . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . C 2 92.622 21.401 8.011 1 68.55 ? C1 RET 255 A 1 HETATM 2 C C2 RET . . . C 2 93.569 20.38 8.766 1 64.8 ? C2 RET 255 A 1 HETATM 3 C C3 RET . . . C 2 95.012 20.584 8.69 1 70.49 ? C3 RET 255 A 1 HETATM 4 C C4 RET . . . C 2 95.561 20.897 7.29 1 73.94 ? C4 RET 255 A 1 HETATM 5 C C5 RET . . . C 2 94.766 21.919 6.448 1 76.33 ? C5 RET 255 A 1 HETATM 6 C C6 RET . . . C 2 93.347 22.211 6.746 1 71.81 ? C6 RET 255 A 1 HETATM 7 C C7 RET . . . C 2 92.581 23.288 5.862 1 73.64 ? C7 RET 255 A 1 HETATM 8 C C8 RET . . . C 2 91.269 23.646 6.027 1 74.87 ? C8 RET 255 A 1 HETATM 9 C C9 RET . . . C 2 90.563 24.673 5.287 1 72.27 ? C9 RET 255 A 1 HETATM 10 C C10 RET . . . C 2 89.262 24.821 5.63 1 69.51 ? C10 RET 255 A 1 HETATM 11 C C11 RET . . . C 2 88.311 25.755 5.101 1 67.17 ? C11 RET 255 A 1 HETATM 12 C C12 RET . . . C 2 87.092 25.632 5.617 1 63.54 ? C12 RET 255 A 1 HETATM 13 C C13 RET . . . C 2 85.925 26.44 5.289 1 59.26 ? C13 RET 255 A 1 HETATM 14 C C14 RET . . . C 2 84.755 26.071 5.966 1 59.98 ? C14 RET 255 A 1 HETATM 15 C C15 RET . . . C 2 83.406 26.651 5.865 1 62.69 ? C15 RET 255 A 1 HETATM 16 C C16 RET . . . C 2 91.402 20.494 7.628 1 62.17 ? C16 RET 255 A 1 HETATM 17 C C17 RET . . . C 2 92.25 22.319 9.177 1 73.25 ? C17 RET 255 A 1 HETATM 18 C C18 RET . . . C 2 95.497 22.623 5.292 1 77.88 ? C18 RET 255 A 1 HETATM 19 C C19 RET . . . C 2 91.238 25.526 4.211 1 74.09 ? C19 RET 255 A 1 HETATM 20 C C20 RET . . . C 2 86.004 27.572 4.281 1 54.65 ? C20 RET 255 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #