data_1UB0 # _model_server_result.job_id kdBm7_ovM-jXVIYRvuBcpQ _model_server_result.datetime_utc '2024-11-15 16:48:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ub0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 1UB0 # _exptl.entry_id 1UB0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.105 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIETHYLENE DIOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1UB0 _cell.length_a 105.145 _cell.length_b 105.145 _cell.length_c 105.469 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UB0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_675 x-y+1,-y+2,-z 1 0 0 0 -1 0 0 0 -1 0 182.116482 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C4 H8 O2' _chem_comp.formula_weight 88.105 _chem_comp.id DIO _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIETHYLENE DIOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C1' DIO sing 83 n n C1 O1 DIO sing 84 n n C1 H11 DIO sing 85 n n C1 H12 DIO sing 86 n n C2 C2' DIO sing 87 n n C2 O1 DIO sing 88 n n C2 H21 DIO sing 89 n n C2 H22 DIO sing 90 n n C1' O1' DIO sing 91 n n C1' "H1'1" DIO sing 92 n n C1' "H1'2" DIO sing 93 n n C2' O1' DIO sing 94 n n C2' "H2'1" DIO sing 95 n n C2' "H2'2" DIO sing 96 n n # _atom_sites.entry_id 1UB0 _atom_sites.fract_transf_matrix[1][1] 0.00951 _atom_sites.fract_transf_matrix[1][2] 0.00549 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01098 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 400 400 SO4 SO4 . C 3 DIO A 1 500 500 DIO DOX . D 3 DIO A 1 502 502 DIO DOX . E 4 GOL A 1 300 300 GOL GOL . F 4 GOL A 1 301 301 GOL GOL . G 4 GOL A 1 302 302 GOL GOL . H 4 GOL A 1 304 304 GOL GOL . I 5 HOH A 1 503 1 HOH TIP . I 5 HOH A 2 504 2 HOH TIP . I 5 HOH A 3 505 3 HOH TIP . I 5 HOH A 4 506 4 HOH TIP . I 5 HOH A 5 507 5 HOH TIP . I 5 HOH A 6 508 6 HOH TIP . I 5 HOH A 7 509 7 HOH TIP . I 5 HOH A 8 510 8 HOH TIP . I 5 HOH A 9 511 9 HOH TIP . I 5 HOH A 10 512 10 HOH TIP . I 5 HOH A 11 513 11 HOH TIP . I 5 HOH A 12 514 12 HOH TIP . I 5 HOH A 13 515 13 HOH TIP . I 5 HOH A 14 516 14 HOH TIP . I 5 HOH A 15 517 15 HOH TIP . I 5 HOH A 16 518 16 HOH TIP . I 5 HOH A 17 519 17 HOH TIP . I 5 HOH A 18 520 18 HOH TIP . I 5 HOH A 19 521 19 HOH TIP . I 5 HOH A 20 522 20 HOH TIP . I 5 HOH A 21 523 21 HOH TIP . I 5 HOH A 22 524 22 HOH TIP . I 5 HOH A 23 525 23 HOH TIP . I 5 HOH A 24 526 24 HOH TIP . I 5 HOH A 25 527 25 HOH TIP . I 5 HOH A 26 528 26 HOH TIP . I 5 HOH A 27 529 27 HOH TIP . I 5 HOH A 28 530 28 HOH TIP . I 5 HOH A 29 531 29 HOH TIP . I 5 HOH A 30 532 30 HOH TIP . I 5 HOH A 31 533 31 HOH TIP . I 5 HOH A 32 534 32 HOH TIP . I 5 HOH A 33 535 33 HOH TIP . I 5 HOH A 34 536 34 HOH TIP . I 5 HOH A 35 537 35 HOH TIP . I 5 HOH A 36 538 36 HOH TIP . I 5 HOH A 37 539 37 HOH TIP . I 5 HOH A 38 540 38 HOH TIP . I 5 HOH A 39 541 39 HOH TIP . I 5 HOH A 40 542 40 HOH TIP . I 5 HOH A 41 543 41 HOH TIP . I 5 HOH A 42 544 42 HOH TIP . I 5 HOH A 43 545 43 HOH TIP . I 5 HOH A 44 546 44 HOH TIP . I 5 HOH A 45 547 45 HOH TIP . I 5 HOH A 46 548 46 HOH TIP . I 5 HOH A 47 549 47 HOH TIP . I 5 HOH A 48 550 48 HOH TIP . I 5 HOH A 49 551 49 HOH TIP . I 5 HOH A 50 552 50 HOH TIP . I 5 HOH A 51 553 51 HOH TIP . I 5 HOH A 52 554 52 HOH TIP . I 5 HOH A 53 555 53 HOH TIP . I 5 HOH A 54 556 54 HOH TIP . I 5 HOH A 55 557 55 HOH TIP . I 5 HOH A 56 558 56 HOH TIP . I 5 HOH A 57 559 57 HOH TIP . I 5 HOH A 58 560 58 HOH TIP . I 5 HOH A 59 561 59 HOH TIP . I 5 HOH A 60 562 60 HOH TIP . I 5 HOH A 61 563 61 HOH TIP . I 5 HOH A 62 564 62 HOH TIP . I 5 HOH A 63 565 63 HOH TIP . I 5 HOH A 64 566 64 HOH TIP . I 5 HOH A 65 567 65 HOH TIP . I 5 HOH A 66 568 66 HOH TIP . I 5 HOH A 67 569 67 HOH TIP . I 5 HOH A 68 570 68 HOH TIP . I 5 HOH A 69 571 69 HOH TIP . I 5 HOH A 70 572 70 HOH TIP . I 5 HOH A 71 573 71 HOH TIP . I 5 HOH A 72 574 72 HOH TIP . I 5 HOH A 73 575 73 HOH TIP . I 5 HOH A 74 576 74 HOH TIP . I 5 HOH A 75 577 75 HOH TIP . I 5 HOH A 76 578 76 HOH TIP . I 5 HOH A 77 579 77 HOH TIP . I 5 HOH A 78 580 78 HOH TIP . I 5 HOH A 79 581 79 HOH TIP . I 5 HOH A 80 582 80 HOH TIP . I 5 HOH A 81 583 81 HOH TIP . I 5 HOH A 82 584 82 HOH TIP . I 5 HOH A 83 585 83 HOH TIP . I 5 HOH A 84 586 84 HOH TIP . I 5 HOH A 85 587 85 HOH TIP . I 5 HOH A 86 588 86 HOH TIP . I 5 HOH A 87 589 87 HOH TIP . I 5 HOH A 88 590 88 HOH TIP . I 5 HOH A 89 591 89 HOH TIP . I 5 HOH A 90 592 90 HOH TIP . I 5 HOH A 91 593 91 HOH TIP . I 5 HOH A 92 594 92 HOH TIP . I 5 HOH A 93 595 93 HOH TIP . I 5 HOH A 94 596 94 HOH TIP . I 5 HOH A 95 597 95 HOH TIP . I 5 HOH A 96 598 96 HOH TIP . I 5 HOH A 97 599 97 HOH TIP . I 5 HOH A 98 600 98 HOH TIP . I 5 HOH A 99 601 99 HOH TIP . I 5 HOH A 100 602 100 HOH TIP . I 5 HOH A 101 603 101 HOH TIP . I 5 HOH A 102 604 102 HOH TIP . I 5 HOH A 103 605 103 HOH TIP . I 5 HOH A 104 606 104 HOH TIP . I 5 HOH A 105 607 105 HOH TIP . I 5 HOH A 106 608 106 HOH TIP . I 5 HOH A 107 609 107 HOH TIP . I 5 HOH A 108 610 108 HOH TIP . I 5 HOH A 109 611 109 HOH TIP . I 5 HOH A 110 612 110 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DIO . . . C 3 2.836 84.664 4.16 1 82.23 ? C1 DIO 500 A 1 HETATM 2 C C2 DIO . . . C 3 1.42 83.094 5.337 1 82.48 ? C2 DIO 500 A 1 HETATM 3 C C1' DIO . . . C 3 2.727 85.645 5.355 1 82.11 ? C1' DIO 500 A 1 HETATM 4 C C2' DIO . . . C 3 1.309 84.069 6.534 1 81.82 ? C2' DIO 500 A 1 HETATM 5 O O1 DIO . . . C 3 2.658 83.301 4.595 1 82.59 ? O1 DIO 500 A 1 HETATM 6 O O1' DIO . . . C 3 2.476 84.928 6.587 1 82.26 ? O1' DIO 500 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #