data_1UBS # _model_server_result.job_id hjrbzatNPEAZdzmAPDUOsA _model_server_result.datetime_utc '2024-11-08 15:38:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ubs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":398}' # _entry.id 1UBS # _exptl.entry_id 1UBS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 105.093 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SERINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.8 _cell.angle_gamma 90 _cell.entry_id 1UBS _cell.length_a 184.2 _cell.length_b 61.8 _cell.length_c 67.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UBS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 184.2 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D N SER . B SER 398 1_555 E C4A PLP . B PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? metalc ? metalc1 B O GLY 232 B GLY 232 1_555 C NA NA . B NA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc2 B O PHE 306 B PHE 306 1_555 C NA NA . B NA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc3 B O SER 308 B SER 308 1_555 C NA NA . B NA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc4 C NA NA . B NA 400 1_555 G O HOH . B HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc5 C NA NA . B NA 400 1_555 G O HOH . B HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? # _chem_comp.formula 'C3 H7 N O3' _chem_comp.formula_weight 105.093 _chem_comp.id SER _chem_comp.mon_nstd_flag y _chem_comp.name SERINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SER sing 303 n n N H SER sing 304 n n N H2 SER sing 305 n n CA C SER sing 306 n n CA CB SER sing 307 n n CA HA SER sing 308 n n C O SER doub 309 n n C OXT SER sing 310 n n CB OG SER sing 311 n n CB HB2 SER sing 312 n n CB HB3 SER sing 313 n n OG HG SER sing 314 n n OXT HXT SER sing 315 n n # _atom_sites.entry_id 1UBS _atom_sites.fract_transf_matrix[1][1] 0.005429 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000456 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016181 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014801 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA B 1 400 400 NA NA . D 4 SER B 1 398 398 SER SER . E 5 PLP B 1 401 398 PLP PLP . F 6 HOH A 1 412 412 HOH HOH . F 6 HOH A 2 413 413 HOH HOH . F 6 HOH A 3 414 414 HOH HOH . F 6 HOH A 4 421 421 HOH HOH . F 6 HOH A 5 423 423 HOH HOH . F 6 HOH A 6 428 428 HOH HOH . F 6 HOH A 7 431 431 HOH HOH . F 6 HOH A 8 432 432 HOH HOH . F 6 HOH A 9 439 439 HOH HOH . F 6 HOH A 10 452 452 HOH HOH . F 6 HOH A 11 454 454 HOH HOH . F 6 HOH A 12 460 460 HOH HOH . F 6 HOH A 13 463 463 HOH HOH . F 6 HOH A 14 468 468 HOH HOH . F 6 HOH A 15 474 474 HOH HOH . F 6 HOH A 16 475 475 HOH HOH . F 6 HOH A 17 476 476 HOH HOH . F 6 HOH A 18 477 477 HOH HOH . F 6 HOH A 19 478 478 HOH HOH . F 6 HOH A 20 479 479 HOH HOH . F 6 HOH A 21 480 480 HOH HOH . F 6 HOH A 22 482 482 HOH HOH . F 6 HOH A 23 488 488 HOH HOH . F 6 HOH A 24 491 491 HOH HOH . F 6 HOH A 25 492 492 HOH HOH . F 6 HOH A 26 503 503 HOH HOH . F 6 HOH A 27 506 506 HOH HOH . F 6 HOH A 28 507 507 HOH HOH . F 6 HOH A 29 509 509 HOH HOH . F 6 HOH A 30 510 510 HOH HOH . F 6 HOH A 31 511 511 HOH HOH . F 6 HOH A 32 512 512 HOH HOH . F 6 HOH A 33 514 514 HOH HOH . F 6 HOH A 34 515 515 HOH HOH . F 6 HOH A 35 516 516 HOH HOH . F 6 HOH A 36 517 517 HOH HOH . F 6 HOH A 37 518 518 HOH HOH . F 6 HOH A 38 519 519 HOH HOH . F 6 HOH A 39 520 520 HOH HOH . F 6 HOH A 40 521 521 HOH HOH . F 6 HOH A 41 522 522 HOH HOH . F 6 HOH A 42 523 523 HOH HOH . F 6 HOH A 43 524 524 HOH HOH . F 6 HOH A 44 525 525 HOH HOH . F 6 HOH A 45 526 526 HOH HOH . F 6 HOH A 46 528 528 HOH HOH . F 6 HOH A 47 562 562 HOH HOH . F 6 HOH A 48 563 563 HOH HOH . F 6 HOH A 49 564 564 HOH HOH . F 6 HOH A 50 565 565 HOH HOH . F 6 HOH A 51 566 566 HOH HOH . F 6 HOH A 52 567 567 HOH HOH . F 6 HOH A 53 568 568 HOH HOH . F 6 HOH A 54 569 569 HOH HOH . F 6 HOH A 55 571 571 HOH HOH . F 6 HOH A 56 572 572 HOH HOH . F 6 HOH A 57 573 573 HOH HOH . F 6 HOH A 58 574 574 HOH HOH . F 6 HOH A 59 575 575 HOH HOH . F 6 HOH A 60 576 576 HOH HOH . F 6 HOH A 61 577 577 HOH HOH . F 6 HOH A 62 578 578 HOH HOH . F 6 HOH A 63 581 581 HOH HOH . F 6 HOH A 64 582 582 HOH HOH . F 6 HOH A 65 583 583 HOH HOH . F 6 HOH A 66 584 584 HOH HOH . F 6 HOH A 67 585 585 HOH HOH . F 6 HOH A 68 587 587 HOH HOH . F 6 HOH A 69 588 588 HOH HOH . F 6 HOH A 70 589 589 HOH HOH . F 6 HOH A 71 590 590 HOH HOH . F 6 HOH A 72 592 592 HOH HOH . F 6 HOH A 73 593 593 HOH HOH . F 6 HOH A 74 594 594 HOH HOH . F 6 HOH A 75 595 595 HOH HOH . F 6 HOH A 76 596 596 HOH HOH . F 6 HOH A 77 634 634 HOH HOH . F 6 HOH A 78 635 635 HOH HOH . F 6 HOH A 79 637 637 HOH HOH . F 6 HOH A 80 638 638 HOH HOH . F 6 HOH A 81 639 639 HOH HOH . F 6 HOH A 82 640 640 HOH HOH . F 6 HOH A 83 641 641 HOH HOH . G 6 HOH B 1 402 401 HOH HOH . G 6 HOH B 2 403 402 HOH HOH . G 6 HOH B 3 404 403 HOH HOH . G 6 HOH B 4 405 404 HOH HOH . G 6 HOH B 5 406 405 HOH HOH . G 6 HOH B 6 407 406 HOH HOH . G 6 HOH B 7 408 407 HOH HOH . G 6 HOH B 8 409 408 HOH HOH . G 6 HOH B 9 410 409 HOH HOH . G 6 HOH B 10 411 410 HOH HOH . G 6 HOH B 11 412 411 HOH HOH . G 6 HOH B 12 413 415 HOH HOH . G 6 HOH B 13 414 416 HOH HOH . G 6 HOH B 14 415 417 HOH HOH . G 6 HOH B 15 416 418 HOH HOH . G 6 HOH B 16 417 419 HOH HOH . G 6 HOH B 17 418 420 HOH HOH . G 6 HOH B 18 419 422 HOH HOH . G 6 HOH B 19 420 424 HOH HOH . G 6 HOH B 20 421 425 HOH HOH . G 6 HOH B 21 422 426 HOH HOH . G 6 HOH B 22 423 427 HOH HOH . G 6 HOH B 23 424 429 HOH HOH . G 6 HOH B 24 425 430 HOH HOH . G 6 HOH B 25 426 433 HOH HOH . G 6 HOH B 26 427 434 HOH HOH . G 6 HOH B 27 428 435 HOH HOH . G 6 HOH B 28 429 436 HOH HOH . G 6 HOH B 29 430 437 HOH HOH . G 6 HOH B 30 431 438 HOH HOH . G 6 HOH B 31 432 440 HOH HOH . G 6 HOH B 32 433 441 HOH HOH . G 6 HOH B 33 434 442 HOH HOH . G 6 HOH B 34 435 443 HOH HOH . G 6 HOH B 35 436 444 HOH HOH . G 6 HOH B 36 437 445 HOH HOH . G 6 HOH B 37 438 446 HOH HOH . G 6 HOH B 38 439 447 HOH HOH . G 6 HOH B 39 440 448 HOH HOH . G 6 HOH B 40 441 449 HOH HOH . G 6 HOH B 41 442 450 HOH HOH . G 6 HOH B 42 443 451 HOH HOH . G 6 HOH B 43 444 453 HOH HOH . G 6 HOH B 44 445 455 HOH HOH . G 6 HOH B 45 446 456 HOH HOH . G 6 HOH B 46 447 457 HOH HOH . G 6 HOH B 47 448 458 HOH HOH . G 6 HOH B 48 449 459 HOH HOH . G 6 HOH B 49 450 461 HOH HOH . G 6 HOH B 50 451 462 HOH HOH . G 6 HOH B 51 452 464 HOH HOH . G 6 HOH B 52 453 465 HOH HOH . G 6 HOH B 53 454 466 HOH HOH . G 6 HOH B 54 455 467 HOH HOH . G 6 HOH B 55 456 469 HOH HOH . G 6 HOH B 56 457 470 HOH HOH . G 6 HOH B 57 458 471 HOH HOH . G 6 HOH B 58 459 472 HOH HOH . G 6 HOH B 59 460 473 HOH HOH . G 6 HOH B 60 461 481 HOH HOH . G 6 HOH B 61 462 483 HOH HOH . G 6 HOH B 62 463 484 HOH HOH . G 6 HOH B 63 464 485 HOH HOH . G 6 HOH B 64 465 486 HOH HOH . G 6 HOH B 65 466 487 HOH HOH . G 6 HOH B 66 467 489 HOH HOH . G 6 HOH B 67 468 490 HOH HOH . G 6 HOH B 68 469 493 HOH HOH . G 6 HOH B 69 470 494 HOH HOH . G 6 HOH B 70 471 495 HOH HOH . G 6 HOH B 71 472 496 HOH HOH . G 6 HOH B 72 473 497 HOH HOH . G 6 HOH B 73 474 498 HOH HOH . G 6 HOH B 74 475 499 HOH HOH . G 6 HOH B 75 476 500 HOH HOH . G 6 HOH B 76 477 501 HOH HOH . G 6 HOH B 77 478 502 HOH HOH . G 6 HOH B 78 479 504 HOH HOH . G 6 HOH B 79 480 505 HOH HOH . G 6 HOH B 80 481 508 HOH HOH . G 6 HOH B 81 482 513 HOH HOH . G 6 HOH B 82 483 527 HOH HOH . G 6 HOH B 83 484 529 HOH HOH . G 6 HOH B 84 485 530 HOH HOH . G 6 HOH B 85 486 531 HOH HOH . G 6 HOH B 86 487 532 HOH HOH . G 6 HOH B 87 488 533 HOH HOH . G 6 HOH B 88 489 534 HOH HOH . G 6 HOH B 89 490 535 HOH HOH . G 6 HOH B 90 491 536 HOH HOH . G 6 HOH B 91 492 537 HOH HOH . G 6 HOH B 92 493 538 HOH HOH . G 6 HOH B 93 494 539 HOH HOH . G 6 HOH B 94 495 540 HOH HOH . G 6 HOH B 95 496 541 HOH HOH . G 6 HOH B 96 497 542 HOH HOH . G 6 HOH B 97 498 543 HOH HOH . G 6 HOH B 98 499 544 HOH HOH . G 6 HOH B 99 500 545 HOH HOH . G 6 HOH B 100 501 546 HOH HOH . G 6 HOH B 101 502 547 HOH HOH . G 6 HOH B 102 503 548 HOH HOH . G 6 HOH B 103 504 549 HOH HOH . G 6 HOH B 104 505 550 HOH HOH . G 6 HOH B 105 506 551 HOH HOH . G 6 HOH B 106 507 552 HOH HOH . G 6 HOH B 107 508 553 HOH HOH . G 6 HOH B 108 509 554 HOH HOH . G 6 HOH B 109 510 555 HOH HOH . G 6 HOH B 110 511 556 HOH HOH . G 6 HOH B 111 512 557 HOH HOH . G 6 HOH B 112 513 558 HOH HOH . G 6 HOH B 113 514 559 HOH HOH . G 6 HOH B 114 515 560 HOH HOH . G 6 HOH B 115 516 561 HOH HOH . G 6 HOH B 116 517 570 HOH HOH . G 6 HOH B 117 518 579 HOH HOH . G 6 HOH B 118 519 580 HOH HOH . G 6 HOH B 119 520 586 HOH HOH . G 6 HOH B 120 521 591 HOH HOH . G 6 HOH B 121 522 597 HOH HOH . G 6 HOH B 122 523 598 HOH HOH . G 6 HOH B 123 524 599 HOH HOH . G 6 HOH B 124 525 600 HOH HOH . G 6 HOH B 125 526 601 HOH HOH . G 6 HOH B 126 527 602 HOH HOH . G 6 HOH B 127 528 603 HOH HOH . G 6 HOH B 128 529 604 HOH HOH . G 6 HOH B 129 530 605 HOH HOH . G 6 HOH B 130 531 606 HOH HOH . G 6 HOH B 131 532 607 HOH HOH . G 6 HOH B 132 533 608 HOH HOH . G 6 HOH B 133 534 609 HOH HOH . G 6 HOH B 134 535 610 HOH HOH . G 6 HOH B 135 536 611 HOH HOH . G 6 HOH B 136 537 612 HOH HOH . G 6 HOH B 137 538 613 HOH HOH . G 6 HOH B 138 539 614 HOH HOH . G 6 HOH B 139 540 615 HOH HOH . G 6 HOH B 140 541 616 HOH HOH . G 6 HOH B 141 542 617 HOH HOH . G 6 HOH B 142 543 618 HOH HOH . G 6 HOH B 143 544 619 HOH HOH . G 6 HOH B 144 545 620 HOH HOH . G 6 HOH B 145 546 621 HOH HOH . G 6 HOH B 146 547 622 HOH HOH . G 6 HOH B 147 548 623 HOH HOH . G 6 HOH B 148 549 624 HOH HOH . G 6 HOH B 149 550 625 HOH HOH . G 6 HOH B 150 551 626 HOH HOH . G 6 HOH B 151 552 627 HOH HOH . G 6 HOH B 152 553 628 HOH HOH . G 6 HOH B 153 554 629 HOH HOH . G 6 HOH B 154 555 630 HOH HOH . G 6 HOH B 155 556 631 HOH HOH . G 6 HOH B 156 557 632 HOH HOH . G 6 HOH B 157 558 633 HOH HOH . G 6 HOH B 158 559 636 HOH HOH . G 6 HOH B 159 560 642 HOH HOH . G 6 HOH B 160 561 643 HOH HOH . G 6 HOH B 161 562 644 HOH HOH . G 6 HOH B 162 563 645 HOH HOH . G 6 HOH B 163 564 646 HOH HOH . G 6 HOH B 164 565 647 HOH HOH . G 6 HOH B 165 566 648 HOH HOH . G 6 HOH B 166 567 649 HOH HOH . G 6 HOH B 167 568 650 HOH HOH . G 6 HOH B 168 569 651 HOH HOH . G 6 HOH B 169 570 652 HOH HOH . G 6 HOH B 170 571 653 HOH HOH . G 6 HOH B 171 572 654 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SER . . . D 4 80.449 15.77 10.313 1 20.88 ? N SER 398 B 1 HETATM 2 C CA SER . . . D 4 79.09 16.327 10.217 1 22.94 ? CA SER 398 B 1 HETATM 3 C C SER . . . D 4 78.868 16.875 8.798 1 25.22 ? C SER 398 B 1 HETATM 4 O O SER . . . D 4 79.829 16.918 8.029 1 25.92 ? O SER 398 B 1 HETATM 5 C CB SER . . . D 4 78.755 17.384 11.214 1 18.64 ? CB SER 398 B 1 HETATM 6 O OG SER . . . D 4 79.321 18.652 11.021 1 19.2 ? OG SER 398 B 1 HETATM 7 O OXT SER . . . D 4 77.788 17.381 8.445 1 24.66 ? OXT SER 398 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 7 #