data_1UCC # _model_server_result.job_id VWgNw5Ni1-pYzN0qWh8wIA _model_server_result.datetime_utc '2024-10-20 03:49:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ucc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1UCC # _exptl.entry_id 1UCC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 324.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3'-URIDINEMONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1UCC _cell.length_a 38.8 _cell.length_b 67.63 _cell.length_c 75.54 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UCC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 15 A CYS 15 1_555 A SG CYS 23 A CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 48 A CYS 48 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 151 A CYS 151 1_555 A SG CYS 184 A CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 168 A CYS 168 1_555 A SG CYS 179 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C9 H13 N2 O9 P' _chem_comp.formula_weight 324.181 _chem_comp.id U3P _chem_comp.mon_nstd_flag . _chem_comp.name "3'-URIDINEMONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 U3P sing 358 n n N1 C6 U3P sing 359 n n N1 C1' U3P sing 360 n n C2 N3 U3P sing 361 n n C2 O2 U3P doub 362 n n N3 C4 U3P sing 363 n n N3 HN3 U3P sing 364 n n C4 C5 U3P sing 365 n n C4 O4 U3P doub 366 n n C5 C6 U3P doub 367 n n C5 H5 U3P sing 368 n n C6 H6 U3P sing 369 n n P O1P U3P sing 370 n n P O2P U3P doub 371 n n P O3P U3P sing 372 n n P O3' U3P sing 373 n n O1P HOP1 U3P sing 374 n n O3P HOP3 U3P sing 375 n n O5' C5' U3P sing 376 n n O5' HO5' U3P sing 377 n n C5' C4' U3P sing 378 n n C5' "H5'1" U3P sing 379 n n C5' "H5'2" U3P sing 380 n n C4' O4' U3P sing 381 n n C4' C3' U3P sing 382 n n C4' H4' U3P sing 383 n n O4' C1' U3P sing 384 n n C3' O3' U3P sing 385 n n C3' C2' U3P sing 386 n n C3' H3' U3P sing 387 n n C2' O2' U3P sing 388 n n C2' C1' U3P sing 389 n n C2' H2' U3P sing 390 n n O2' HO2' U3P sing 391 n n C1' H1' U3P sing 392 n n # _atom_sites.entry_id 1UCC _atom_sites.fract_transf_matrix[1][1] 0.025773 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014786 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 U3P A 1 300 300 U3P UMP . C 3 HOH A 1 200 200 HOH WAT . C 3 HOH A 2 201 201 HOH WAT . C 3 HOH A 3 202 202 HOH WAT . C 3 HOH A 4 203 203 HOH WAT . C 3 HOH A 5 204 204 HOH WAT . C 3 HOH A 6 205 205 HOH WAT . C 3 HOH A 7 206 206 HOH WAT . C 3 HOH A 8 207 207 HOH WAT . C 3 HOH A 9 208 208 HOH WAT . C 3 HOH A 10 209 209 HOH WAT . C 3 HOH A 11 210 210 HOH WAT . C 3 HOH A 12 211 211 HOH WAT . C 3 HOH A 13 212 212 HOH WAT . C 3 HOH A 14 213 213 HOH WAT . C 3 HOH A 15 214 214 HOH WAT . C 3 HOH A 16 215 215 HOH WAT . C 3 HOH A 17 216 216 HOH WAT . C 3 HOH A 18 217 217 HOH WAT . C 3 HOH A 19 218 218 HOH WAT . C 3 HOH A 20 219 219 HOH WAT . C 3 HOH A 21 220 220 HOH WAT . C 3 HOH A 22 221 221 HOH WAT . C 3 HOH A 23 222 222 HOH WAT . C 3 HOH A 24 223 223 HOH WAT . C 3 HOH A 25 224 224 HOH WAT . C 3 HOH A 26 225 225 HOH WAT . C 3 HOH A 27 226 226 HOH WAT . C 3 HOH A 28 227 227 HOH WAT . C 3 HOH A 29 228 228 HOH WAT . C 3 HOH A 30 229 229 HOH WAT . C 3 HOH A 31 230 230 HOH WAT . C 3 HOH A 32 231 231 HOH WAT . C 3 HOH A 33 232 232 HOH WAT . C 3 HOH A 34 233 233 HOH WAT . C 3 HOH A 35 234 234 HOH WAT . C 3 HOH A 36 235 235 HOH WAT . C 3 HOH A 37 236 236 HOH WAT . C 3 HOH A 38 237 237 HOH WAT . C 3 HOH A 39 238 238 HOH WAT . C 3 HOH A 40 239 239 HOH WAT . C 3 HOH A 41 240 240 HOH WAT . C 3 HOH A 42 241 241 HOH WAT . C 3 HOH A 43 242 242 HOH WAT . C 3 HOH A 44 243 243 HOH WAT . C 3 HOH A 45 244 244 HOH WAT . C 3 HOH A 46 245 245 HOH WAT . C 3 HOH A 47 246 246 HOH WAT . C 3 HOH A 48 247 247 HOH WAT . C 3 HOH A 49 248 248 HOH WAT . C 3 HOH A 50 249 249 HOH WAT . C 3 HOH A 51 250 250 HOH WAT . C 3 HOH A 52 251 251 HOH WAT . C 3 HOH A 53 252 252 HOH WAT . C 3 HOH A 54 253 253 HOH WAT . C 3 HOH A 55 254 254 HOH WAT . C 3 HOH A 56 255 255 HOH WAT . C 3 HOH A 57 256 256 HOH WAT . C 3 HOH A 58 257 257 HOH WAT . C 3 HOH A 59 258 258 HOH WAT . C 3 HOH A 60 259 259 HOH WAT . C 3 HOH A 61 260 260 HOH WAT . C 3 HOH A 62 261 261 HOH WAT . C 3 HOH A 63 262 262 HOH WAT . C 3 HOH A 64 263 263 HOH WAT . C 3 HOH A 65 264 264 HOH WAT . C 3 HOH A 66 265 265 HOH WAT . C 3 HOH A 67 266 266 HOH WAT . C 3 HOH A 68 267 267 HOH WAT . C 3 HOH A 69 268 268 HOH WAT . C 3 HOH A 70 269 269 HOH WAT . C 3 HOH A 71 270 270 HOH WAT . C 3 HOH A 72 271 271 HOH WAT . C 3 HOH A 73 272 272 HOH WAT . C 3 HOH A 74 273 273 HOH WAT . C 3 HOH A 75 274 274 HOH WAT . C 3 HOH A 76 275 275 HOH WAT . C 3 HOH A 77 276 276 HOH WAT . C 3 HOH A 78 277 277 HOH WAT . C 3 HOH A 79 278 278 HOH WAT . C 3 HOH A 80 279 279 HOH WAT . C 3 HOH A 81 280 280 HOH WAT . C 3 HOH A 82 281 281 HOH WAT . C 3 HOH A 83 282 282 HOH WAT . C 3 HOH A 84 283 283 HOH WAT . C 3 HOH A 85 284 284 HOH WAT . C 3 HOH A 86 285 285 HOH WAT . C 3 HOH A 87 286 286 HOH WAT . C 3 HOH A 88 287 287 HOH WAT . C 3 HOH A 89 288 288 HOH WAT . C 3 HOH A 90 289 289 HOH WAT . C 3 HOH A 91 290 290 HOH WAT . C 3 HOH A 92 291 291 HOH WAT . C 3 HOH A 93 292 292 HOH WAT . C 3 HOH A 94 293 293 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 U3P . . . B 2 26.512 28.756 35.552 1 31.65 ? N1 U3P 300 A 1 HETATM 2 C C2 U3P . . . B 2 27.914 28.95 35.761 1 29.06 ? C2 U3P 300 A 1 HETATM 3 N N3 U3P . . . B 2 28.269 30.271 36.069 1 23.84 ? N3 U3P 300 A 1 HETATM 4 C C4 U3P . . . B 2 27.384 31.365 36.179 1 22.55 ? C4 U3P 300 A 1 HETATM 5 C C5 U3P . . . B 2 25.968 31.065 35.945 1 23.27 ? C5 U3P 300 A 1 HETATM 6 C C6 U3P . . . B 2 25.601 29.746 35.637 1 28.39 ? C6 U3P 300 A 1 HETATM 7 O O2 U3P . . . B 2 28.775 28.08 35.693 1 28.39 ? O2 U3P 300 A 1 HETATM 8 O O4 U3P . . . B 2 27.773 32.488 36.45 1 18.39 ? O4 U3P 300 A 1 HETATM 9 P P U3P . . . B 2 24.522 23.756 33.882 1 56.47 ? P U3P 300 A 1 HETATM 10 O O1P U3P . . . B 2 23.278 24.087 33.192 1 55.75 ? O1P U3P 300 A 1 HETATM 11 O O2P U3P . . . B 2 24.542 22.458 34.615 1 55.68 ? O2P U3P 300 A 1 HETATM 12 O O3P U3P . . . B 2 24.697 23.03 32.624 1 55.82 ? O3P U3P 300 A 1 HETATM 13 O O5' U3P . . . B 2 28.319 23.429 36.26 1 50.13 ? O5' U3P 300 A 1 HETATM 14 C C5' U3P . . . B 2 27.817 24.734 36.645 1 47.9 ? C5' U3P 300 A 1 HETATM 15 C C4' U3P . . . B 2 26.513 25.037 35.891 1 46.53 ? C4' U3P 300 A 1 HETATM 16 O O4' U3P . . . B 2 26.002 26.381 36.296 1 42.66 ? O4' U3P 300 A 1 HETATM 17 C C3' U3P . . . B 2 26.762 25.253 34.383 1 47.56 ? C3' U3P 300 A 1 HETATM 18 O O3' U3P . . . B 2 26.008 24.237 33.585 1 52.38 ? O3' U3P 300 A 1 HETATM 19 C C2' U3P . . . B 2 26.299 26.666 33.95 1 43.88 ? C2' U3P 300 A 1 HETATM 20 O O2' U3P . . . B 2 25.136 26.535 33.094 1 46.58 ? O2' U3P 300 A 1 HETATM 21 C C1' U3P . . . B 2 25.897 27.436 35.218 1 39.82 ? C1' U3P 300 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #