data_1UD5 # _model_server_result.job_id F421AiDdQLNvmnEU3WW4gw _model_server_result.datetime_utc '2024-12-13 08:25:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ud5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 1UD5 # _exptl.entry_id 1UD5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1UD5 _cell.length_a 132.605 _cell.length_b 132.605 _cell.length_c 132.605 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UD5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 195 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_656 -z+1,x,-y+1 0 0 -1 1 0 0 0 -1 0 132.605 0 132.605 3 'crystal symmetry operation' 11_566 y,-z+1,-x+1 0 1 0 0 0 -1 -1 0 0 0 132.605 132.605 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 68 A ASN 68 1_555 E RB RB . A RB 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? metalc ? metalc2 A OD1 ASN 104 A ASN 104 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc3 A O SER 144 A SER 144 1_555 E RB RB . A RB 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? metalc ? metalc4 A OD1 ASP 194 A ASP 194 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc5 A O ASP 194 A ASP 194 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc6 A OD1 ASN 200 A ASN 200 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc7 A O HIS 235 A HIS 235 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc8 A O ARG 249 A ARG 249 1_555 F RB RB . A RB 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc9 A O ASN 250 A ASN 250 1_555 F RB RB . A RB 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.189 ? metalc ? metalc10 A O ALA 252 A ALA 252 1_555 F RB RB . A RB 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc11 A ND2 ASN 289 A ASN 289 1_555 D RB RB . A RB 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.225 ? metalc ? metalc12 A OD1 ASN 289 A ASN 289 1_555 D RB RB . A RB 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc13 A O ASN 289 A ASN 289 1_555 D RB RB . A RB 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.437 ? metalc ? metalc14 A O GLY 300 A GLY 300 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc15 A O TYR 302 A TYR 302 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc16 A O VAL 324 A VAL 324 1_555 D RB RB . A RB 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc17 A OD1 ASP 325 A ASP 325 1_555 D RB RB . A RB 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc18 A OG SER 337 A SER 337 1_555 D RB RB . A RB 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.841 ? metalc ? metalc19 A O SER 337 A SER 337 1_555 D RB RB . A RB 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc20 A OE2 GLU 383 A GLU 383 1_555 I RB RB . A RB 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.59 ? metalc ? metalc21 A O TRP 403 A TRP 403 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc22 A OD1 ASP 404 A ASP 404 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc23 A O GLU 411 A GLU 411 1_555 H RB RB . A RB 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.858 ? metalc ? metalc24 A O SER 419 A SER 419 1_555 H RB RB . A RB 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.977 ? metalc ? metalc25 A OD1 ASN 441 A ASN 441 1_555 H RB RB . A RB 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc26 A O THR 445 A THR 445 1_555 G RB RB . A RB 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.075 ? metalc ? metalc27 A O THR 450 A THR 450 1_555 I RB RB . A RB 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc28 A OD1 ASN 452 A ASN 452 11_566 E RB RB . A RB 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc29 A OD1 ASN 479 A ASN 479 1_555 G RB RB . A RB 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.014 ? metalc ? metalc30 A O GLN 480 A GLN 480 1_555 G RB RB . A RB 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc31 B NA NA . A NA 1001 1_555 J O HOH . A HOH 2029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc32 C NA NA . A NA 1002 1_555 J O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc33 E RB RB . A RB 1004 1_555 J O HOH . A HOH 2067 11_566 ? ? ? ? ? ? ? ? ? ? ? ? 3.854 ? metalc ? metalc34 H RB RB . A RB 1007 1_555 J O HOH . A HOH 2111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc35 H RB RB . A RB 1007 1_555 J O HOH . A HOH 2112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc36 I RB RB . A RB 1008 1_555 J O HOH . A HOH 2098 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.622 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1UD5 _atom_sites.fract_transf_matrix[1][1] 0.007541 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007541 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007541 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1001 1001 NA NA1 . C 2 NA A 1 1002 1002 NA NA1 . D 3 RB A 1 1003 1003 RB RB . E 3 RB A 1 1004 1004 RB RB . F 3 RB A 1 1005 1005 RB RB . G 3 RB A 1 1006 1006 RB RB . H 3 RB A 1 1007 1007 RB RB . I 3 RB A 1 1008 1008 RB RB . J 4 HOH A 1 2001 2001 HOH HOH . J 4 HOH A 2 2002 2002 HOH HOH . J 4 HOH A 3 2009 2009 HOH HOH . J 4 HOH A 4 2010 2010 HOH HOH . J 4 HOH A 5 2011 2011 HOH HOH . J 4 HOH A 6 2012 2012 HOH HOH . J 4 HOH A 7 2013 2013 HOH HOH . J 4 HOH A 8 2014 2014 HOH HOH . J 4 HOH A 9 2015 2015 HOH HOH . J 4 HOH A 10 2016 2016 HOH HOH . J 4 HOH A 11 2017 2017 HOH HOH . J 4 HOH A 12 2018 2018 HOH HOH . J 4 HOH A 13 2019 2019 HOH HOH . J 4 HOH A 14 2020 2020 HOH HOH . J 4 HOH A 15 2021 2021 HOH HOH . J 4 HOH A 16 2022 2022 HOH HOH . J 4 HOH A 17 2023 2023 HOH HOH . J 4 HOH A 18 2024 2024 HOH HOH . J 4 HOH A 19 2025 2025 HOH HOH . J 4 HOH A 20 2026 2026 HOH HOH . J 4 HOH A 21 2027 2027 HOH HOH . J 4 HOH A 22 2028 2028 HOH HOH . J 4 HOH A 23 2029 2029 HOH HOH . J 4 HOH A 24 2030 2030 HOH HOH . J 4 HOH A 25 2031 2031 HOH HOH . J 4 HOH A 26 2032 2032 HOH HOH . J 4 HOH A 27 2033 2033 HOH HOH . J 4 HOH A 28 2034 2034 HOH HOH . J 4 HOH A 29 2035 2035 HOH HOH . J 4 HOH A 30 2036 2036 HOH HOH . J 4 HOH A 31 2037 2037 HOH HOH . J 4 HOH A 32 2038 2038 HOH HOH . J 4 HOH A 33 2039 2039 HOH HOH . J 4 HOH A 34 2040 2040 HOH HOH . J 4 HOH A 35 2041 2041 HOH HOH . J 4 HOH A 36 2042 2042 HOH HOH . J 4 HOH A 37 2043 2043 HOH HOH . J 4 HOH A 38 2044 2044 HOH HOH . J 4 HOH A 39 2045 2045 HOH HOH . J 4 HOH A 40 2046 2046 HOH HOH . J 4 HOH A 41 2047 2047 HOH HOH . J 4 HOH A 42 2048 2048 HOH HOH . J 4 HOH A 43 2049 2049 HOH HOH . J 4 HOH A 44 2050 2050 HOH HOH . J 4 HOH A 45 2051 2051 HOH HOH . J 4 HOH A 46 2052 2052 HOH HOH . J 4 HOH A 47 2053 2053 HOH HOH . J 4 HOH A 48 2054 2054 HOH HOH . J 4 HOH A 49 2055 2055 HOH HOH . J 4 HOH A 50 2056 2056 HOH HOH . J 4 HOH A 51 2057 2057 HOH HOH . J 4 HOH A 52 2058 2058 HOH HOH . J 4 HOH A 53 2059 2059 HOH HOH . J 4 HOH A 54 2060 2060 HOH HOH . J 4 HOH A 55 2061 2061 HOH HOH . J 4 HOH A 56 2062 2062 HOH HOH . J 4 HOH A 57 2063 2063 HOH HOH . J 4 HOH A 58 2064 2064 HOH HOH . J 4 HOH A 59 2065 2065 HOH HOH . J 4 HOH A 60 2066 2066 HOH HOH . J 4 HOH A 61 2067 2067 HOH HOH . J 4 HOH A 62 2068 2068 HOH HOH . J 4 HOH A 63 2069 2069 HOH HOH . J 4 HOH A 64 2070 2070 HOH HOH . J 4 HOH A 65 2071 2071 HOH HOH . J 4 HOH A 66 2072 2072 HOH HOH . J 4 HOH A 67 2073 2073 HOH HOH . J 4 HOH A 68 2074 2074 HOH HOH . J 4 HOH A 69 2075 2075 HOH HOH . J 4 HOH A 70 2076 2076 HOH HOH . J 4 HOH A 71 2077 2077 HOH HOH . J 4 HOH A 72 2079 2079 HOH HOH . J 4 HOH A 73 2080 2080 HOH HOH . J 4 HOH A 74 2081 2081 HOH HOH . J 4 HOH A 75 2082 2082 HOH HOH . J 4 HOH A 76 2083 2083 HOH HOH . J 4 HOH A 77 2084 2084 HOH HOH . J 4 HOH A 78 2085 2085 HOH HOH . J 4 HOH A 79 2086 2086 HOH HOH . J 4 HOH A 80 2087 2087 HOH HOH . J 4 HOH A 81 2088 2088 HOH HOH . J 4 HOH A 82 2089 2089 HOH HOH . J 4 HOH A 83 2090 2090 HOH HOH . J 4 HOH A 84 2091 2091 HOH HOH . J 4 HOH A 85 2092 2092 HOH HOH . J 4 HOH A 86 2093 2093 HOH HOH . J 4 HOH A 87 2094 2094 HOH HOH . J 4 HOH A 88 2095 2095 HOH HOH . J 4 HOH A 89 2096 2096 HOH HOH . J 4 HOH A 90 2097 2097 HOH HOH . J 4 HOH A 91 2098 2098 HOH HOH . J 4 HOH A 92 2099 2099 HOH HOH . J 4 HOH A 93 2100 2100 HOH HOH . J 4 HOH A 94 2101 2101 HOH HOH . J 4 HOH A 95 2103 2103 HOH HOH . J 4 HOH A 96 2104 2104 HOH HOH . J 4 HOH A 97 2105 2105 HOH HOH . J 4 HOH A 98 2106 2106 HOH HOH . J 4 HOH A 99 2108 2108 HOH HOH . J 4 HOH A 100 2109 2109 HOH HOH . J 4 HOH A 101 2110 2110 HOH HOH . J 4 HOH A 102 2111 2111 HOH HOH . J 4 HOH A 103 2112 2112 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 103.192 _atom_site.Cartn_y 63.107 _atom_site.Cartn_z 29.248 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 1131 _model_server_stats.encode_time_ms 29 _model_server_stats.element_count 1 #