data_1UDU # _model_server_result.job_id KFCZI8Am5CiRbr5xU-y6gg _model_server_result.datetime_utc '2024-11-17 18:37:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1udu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1003}' # _entry.id 1UDU # _exptl.entry_id 1UDU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 389.404 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "6-BENZO[1,3]DIOXOL-5-YL-2-METHYL-2,3,6,7,12,12A-HEXAHYDRO-PYRAZINO[1',2':1,6]PYRIDO[3,4-B]INDOLE-1,4-DIONE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.28 _cell.angle_gamma 90 _cell.entry_id 1UDU _cell.length_a 131.352 _cell.length_b 48.561 _cell.length_c 123.863 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UDU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 81 A HIS 617 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc2 A NE2 HIS 117 A HIS 653 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc3 A OD2 ASP 118 A ASP 654 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc4 A OD1 ASP 118 A ASP 654 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.051 ? metalc ? metalc5 B NE2 HIS 81 B HIS 617 1_555 F ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc6 B NE2 HIS 117 B HIS 653 1_555 F ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc7 B OD2 ASP 118 B ASP 654 1_555 F ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc8 B OD1 ASP 118 B ASP 654 1_555 G MG MG . B MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.079 ? metalc ? metalc9 B OD2 ASP 228 B ASP 764 1_555 F ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc10 B OD1 ASP 228 B ASP 764 1_555 F ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? # _chem_comp.formula 'C22 H19 N3 O4' _chem_comp.formula_weight 389.404 _chem_comp.id CIA _chem_comp.mon_nstd_flag . _chem_comp.name "6-BENZO[1,3]DIOXOL-5-YL-2-METHYL-2,3,6,7,12,12A-HEXAHYDRO-PYRAZINO[1',2':1,6]PYRIDO[3,4-B]INDOLE-1,4-DIONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms TADALAFIL;CIALIS # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 CIA doub 70 n y C3 C4 CIA sing 71 n y C3 H3 CIA sing 72 n n C2 C1 CIA sing 73 n y C2 H2 CIA sing 74 n n C1 C6 CIA doub 75 n y C1 H1 CIA sing 76 n n C6 C7 CIA sing 77 n y C6 C5 CIA sing 78 n y C7 C8 CIA doub 79 n y C7 C10 CIA sing 80 n n C8 N9 CIA sing 81 n y C8 C13 CIA sing 82 n n N9 C5 CIA sing 83 n y N9 HN9 CIA sing 84 n n C5 C4 CIA doub 85 n y C4 H4 CIA sing 86 n n C13 N12 CIA sing 87 n n C13 C22 CIA sing 88 n n C13 H13 CIA sing 89 n n N12 C17 CIA sing 90 n n N12 C11 CIA sing 91 n n C17 O20 CIA doub 92 n n C17 C16 CIA sing 93 n n C16 N15 CIA sing 94 n n C16 H161 CIA sing 95 n n C16 H162 CIA sing 96 n n N15 C31 CIA sing 97 n n N15 C18 CIA sing 98 n n C31 O32 CIA doub 99 n n C31 C11 CIA sing 100 n n C11 C10 CIA sing 101 n n C11 H11 CIA sing 102 n n C10 H101 CIA sing 103 n n C10 H102 CIA sing 104 n n C18 H181 CIA sing 105 n n C18 H182 CIA sing 106 n n C18 H183 CIA sing 107 n n C22 C27 CIA doub 108 n y C22 C23 CIA sing 109 n y C27 C26 CIA sing 110 n y C27 H27 CIA sing 111 n n C26 C25 CIA doub 112 n y C26 H26 CIA sing 113 n n C25 O30 CIA sing 114 n n C25 C24 CIA sing 115 n y O30 C29 CIA sing 116 n n C29 O28 CIA sing 117 n n C29 H291 CIA sing 118 n n C29 H292 CIA sing 119 n n O28 C24 CIA sing 120 n n C24 C23 CIA doub 121 n y C23 H23 CIA sing 122 n n # _atom_sites.entry_id 1UDU _atom_sites.fract_transf_matrix[1][1] 0.007613 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003926 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009084 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1001 1001 ZN ZN2 . D 3 MG A 1 1002 1002 MG MG2 . E 4 CIA A 1 1003 1003 CIA CIA . F 2 ZN B 1 2001 2001 ZN ZN2 . G 3 MG B 1 2002 2002 MG MG2 . H 4 CIA B 1 2003 2003 CIA CIA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 CIA . . . E 4 24.435 39.243 103.913 1 41.23 ? C3 CIA 1003 A 1 HETATM 2 C C2 CIA . . . E 4 24.136 38.324 102.831 1 59.51 ? C2 CIA 1003 A 1 HETATM 3 C C1 CIA . . . E 4 22.783 38.095 102.381 1 73.89 ? C1 CIA 1003 A 1 HETATM 4 C C6 CIA . . . E 4 21.678 38.816 103.045 1 73.84 ? C6 CIA 1003 A 1 HETATM 5 C C7 CIA . . . E 4 20.265 38.832 102.866 1 60.99 ? C7 CIA 1003 A 1 HETATM 6 C C8 CIA . . . E 4 19.777 39.758 103.858 1 83.6 ? C8 CIA 1003 A 1 HETATM 7 N N9 CIA . . . E 4 20.831 40.32 104.644 1 81.06 ? N9 CIA 1003 A 1 HETATM 8 C C5 CIA . . . E 4 21.988 39.748 104.15 1 72.13 ? C5 CIA 1003 A 1 HETATM 9 C C4 CIA . . . E 4 23.384 39.955 104.577 1 55.54 ? C4 CIA 1003 A 1 HETATM 10 C C13 CIA . . . E 4 18.22 40.076 104.023 1 81.06 ? C13 CIA 1003 A 1 HETATM 11 N N12 CIA . . . E 4 17.274 38.982 103.387 1 24.73 ? N12 CIA 1003 A 1 HETATM 12 C C17 CIA . . . E 4 15.867 39.093 103.497 1 47.14 ? C17 CIA 1003 A 1 HETATM 13 O O20 CIA . . . E 4 15.251 40.023 104.071 1 28.13 ? O20 CIA 1003 A 1 HETATM 14 C C16 CIA . . . E 4 14.965 37.999 102.9 1 51.92 ? C16 CIA 1003 A 1 HETATM 15 N N15 CIA . . . E 4 15.552 37.146 101.801 1 65.1 ? N15 CIA 1003 A 1 HETATM 16 C C31 CIA . . . E 4 16.948 37.002 101.611 1 42.69 ? C31 CIA 1003 A 1 HETATM 17 O O32 CIA . . . E 4 17.432 36.293 100.678 1 30.18 ? O32 CIA 1003 A 1 HETATM 18 C C11 CIA . . . E 4 17.928 37.758 102.648 1 15.12 ? C11 CIA 1003 A 1 HETATM 19 C C10 CIA . . . E 4 19.261 38.105 101.898 1 21.39 ? C10 CIA 1003 A 1 HETATM 20 C C18 CIA . . . E 4 14.557 36.465 100.936 1 20.18 ? C18 CIA 1003 A 1 HETATM 21 C C22 CIA . . . E 4 18.037 41.572 103.414 1 70.82 ? C22 CIA 1003 A 1 HETATM 22 C C27 CIA . . . E 4 17.247 42.553 104.134 1 41.59 ? C27 CIA 1003 A 1 HETATM 23 C C26 CIA . . . E 4 17.079 43.883 103.615 1 72.69 ? C26 CIA 1003 A 1 HETATM 24 C C25 CIA . . . E 4 17.721 44.248 102.333 1 66.07 ? C25 CIA 1003 A 1 HETATM 25 O O30 CIA . . . E 4 17.689 45.437 101.674 1 83.37 ? O30 CIA 1003 A 1 HETATM 26 C C29 CIA . . . E 4 18.497 45.181 100.487 1 81.77 ? C29 CIA 1003 A 1 HETATM 27 O O28 CIA . . . E 4 18.998 43.812 100.484 1 67.67 ? O28 CIA 1003 A 1 HETATM 28 C C24 CIA . . . E 4 18.495 43.294 101.625 1 58.27 ? C24 CIA 1003 A 1 HETATM 29 C C23 CIA . . . E 4 18.663 41.988 102.13 1 60.89 ? C23 CIA 1003 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 29 #