data_1UDW # _model_server_result.job_id NMevdvOfz4InZK0mCh_hoA _model_server_result.datetime_utc '2024-10-20 18:46:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1udw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 1UDW # _exptl.entry_id 1UDW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1UDW _cell.length_a 133.204 _cell.length_b 248.097 _cell.length_c 91.927 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UDW _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C9 H16 N3 O14 P3' _chem_comp.formula_weight 483.156 _chem_comp.id CTP _chem_comp.mon_nstd_flag . _chem_comp.name "CYTIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CTP sing 70 n n N1 C6 CTP sing 71 n n N1 C1' CTP sing 72 n n C2 N3 CTP sing 73 n n C2 O2 CTP doub 74 n n N3 C4 CTP doub 75 n n C4 C5 CTP sing 76 n n C4 N4 CTP sing 77 n n C5 C6 CTP doub 78 n n C5 H5 CTP sing 79 n n C6 H6 CTP sing 80 n n N4 HN41 CTP sing 81 n n N4 HN42 CTP sing 82 n n C1' C2' CTP sing 83 n n C1' O4' CTP sing 84 n n C1' H1' CTP sing 85 n n C2' O2' CTP sing 86 n n C2' C3' CTP sing 87 n n C2' H2' CTP sing 88 n n O2' HO2' CTP sing 89 n n C3' C4' CTP sing 90 n n C3' O3' CTP sing 91 n n C3' H3' CTP sing 92 n n C4' O4' CTP sing 93 n n C4' C5' CTP sing 94 n n C4' H4' CTP sing 95 n n O3' HO3' CTP sing 96 n n C5' O5' CTP sing 97 n n C5' "H5'1" CTP sing 98 n n C5' "H5'2" CTP sing 99 n n O5' PA CTP sing 100 n n PA O1A CTP doub 101 n n PA O2A CTP sing 102 n n PA O3A CTP sing 103 n n O2A HOA2 CTP sing 104 n n O3A PB CTP sing 105 n n PB O1B CTP doub 106 n n PB O2B CTP sing 107 n n PB O3B CTP sing 108 n n O2B HOB2 CTP sing 109 n n O3B PG CTP sing 110 n n PG O1G CTP doub 111 n n PG O2G CTP sing 112 n n PG O3G CTP sing 113 n n O2G HOG2 CTP sing 114 n n O3G HOG3 CTP sing 115 n n # _atom_sites.entry_id 1UDW _atom_sites.fract_transf_matrix[1][1] 0.007507 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004031 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010878 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CTP A 1 301 301 CTP CTP . D 2 CTP B 1 1301 301 CTP CTP . E 3 HOH A 1 302 1 HOH HOH . E 3 HOH A 2 303 2 HOH HOH . E 3 HOH A 3 304 6 HOH HOH . E 3 HOH A 4 305 15 HOH HOH . E 3 HOH A 5 306 22 HOH HOH . E 3 HOH A 6 307 23 HOH HOH . E 3 HOH A 7 308 24 HOH HOH . E 3 HOH A 8 309 25 HOH HOH . E 3 HOH A 9 310 26 HOH HOH . E 3 HOH A 10 311 27 HOH HOH . E 3 HOH A 11 312 28 HOH HOH . E 3 HOH A 12 313 29 HOH HOH . E 3 HOH A 13 314 30 HOH HOH . E 3 HOH A 14 315 31 HOH HOH . E 3 HOH A 15 316 32 HOH HOH . E 3 HOH A 16 317 33 HOH HOH . E 3 HOH A 17 318 34 HOH HOH . E 3 HOH A 18 319 35 HOH HOH . E 3 HOH A 19 320 36 HOH HOH . E 3 HOH A 20 321 37 HOH HOH . E 3 HOH A 21 322 52 HOH HOH . E 3 HOH A 22 323 53 HOH HOH . E 3 HOH A 23 324 54 HOH HOH . E 3 HOH A 24 325 55 HOH HOH . E 3 HOH A 25 326 56 HOH HOH . E 3 HOH A 26 327 57 HOH HOH . E 3 HOH A 27 328 58 HOH HOH . E 3 HOH A 28 329 64 HOH HOH . E 3 HOH A 29 330 69 HOH HOH . E 3 HOH A 30 331 70 HOH HOH . E 3 HOH A 31 332 71 HOH HOH . E 3 HOH A 32 333 72 HOH HOH . E 3 HOH A 33 334 74 HOH HOH . E 3 HOH A 34 335 75 HOH HOH . F 3 HOH B 1 1302 3 HOH HOH . F 3 HOH B 2 1303 4 HOH HOH . F 3 HOH B 3 1304 5 HOH HOH . F 3 HOH B 4 1305 7 HOH HOH . F 3 HOH B 5 1306 8 HOH HOH . F 3 HOH B 6 1307 9 HOH HOH . F 3 HOH B 7 1308 10 HOH HOH . F 3 HOH B 8 1309 11 HOH HOH . F 3 HOH B 9 1310 12 HOH HOH . F 3 HOH B 10 1311 13 HOH HOH . F 3 HOH B 11 1312 14 HOH HOH . F 3 HOH B 12 1313 16 HOH HOH . F 3 HOH B 13 1314 17 HOH HOH . F 3 HOH B 14 1315 18 HOH HOH . F 3 HOH B 15 1316 19 HOH HOH . F 3 HOH B 16 1317 20 HOH HOH . F 3 HOH B 17 1318 21 HOH HOH . F 3 HOH B 18 1319 38 HOH HOH . F 3 HOH B 19 1320 39 HOH HOH . F 3 HOH B 20 1321 40 HOH HOH . F 3 HOH B 21 1322 41 HOH HOH . F 3 HOH B 22 1323 42 HOH HOH . F 3 HOH B 23 1324 43 HOH HOH . F 3 HOH B 24 1325 44 HOH HOH . F 3 HOH B 25 1326 45 HOH HOH . F 3 HOH B 26 1327 46 HOH HOH . F 3 HOH B 27 1328 47 HOH HOH . F 3 HOH B 28 1329 48 HOH HOH . F 3 HOH B 29 1330 49 HOH HOH . F 3 HOH B 30 1331 50 HOH HOH . F 3 HOH B 31 1332 51 HOH HOH . F 3 HOH B 32 1333 59 HOH HOH . F 3 HOH B 33 1334 60 HOH HOH . F 3 HOH B 34 1335 61 HOH HOH . F 3 HOH B 35 1336 62 HOH HOH . F 3 HOH B 36 1337 63 HOH HOH . F 3 HOH B 37 1338 65 HOH HOH . F 3 HOH B 38 1339 66 HOH HOH . F 3 HOH B 39 1340 67 HOH HOH . F 3 HOH B 40 1341 68 HOH HOH . F 3 HOH B 41 1342 73 HOH HOH . F 3 HOH B 42 1343 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CTP . . . C 2 8.882 36.034 35.122 1 42.64 ? N1 CTP 301 A 1 HETATM 2 C C2 CTP . . . C 2 8.78 35.768 36.485 1 44.48 ? C2 CTP 301 A 1 HETATM 3 N N3 CTP . . . C 2 7.633 35.983 37.176 1 45.94 ? N3 CTP 301 A 1 HETATM 4 C C4 CTP . . . C 2 6.501 36.487 36.517 1 46.59 ? C4 CTP 301 A 1 HETATM 5 C C5 CTP . . . C 2 6.519 36.786 35.135 1 45.23 ? C5 CTP 301 A 1 HETATM 6 C C6 CTP . . . C 2 7.737 36.539 34.489 1 43.89 ? C6 CTP 301 A 1 HETATM 7 O O2 CTP . . . C 2 9.733 35.32 37.152 1 46.09 ? O2 CTP 301 A 1 HETATM 8 N N4 CTP . . . C 2 5.395 36.676 37.254 1 48.41 ? N4 CTP 301 A 1 HETATM 9 C C1' CTP . . . C 2 10.158 35.785 34.381 1 43.64 ? C1' CTP 301 A 1 HETATM 10 C C2' CTP . . . C 2 10.03 34.705 33.301 1 44.28 ? C2' CTP 301 A 1 HETATM 11 O O2' CTP . . . C 2 10.306 33.406 33.822 1 41.81 ? O2' CTP 301 A 1 HETATM 12 C C3' CTP . . . C 2 10.969 35.161 32.219 1 44.43 ? C3' CTP 301 A 1 HETATM 13 C C4' CTP . . . C 2 11.455 36.54 32.635 1 44.63 ? C4' CTP 301 A 1 HETATM 14 O O4' CTP . . . C 2 10.562 36.933 33.693 1 44.85 ? O4' CTP 301 A 1 HETATM 15 O O3' CTP . . . C 2 12.162 34.401 32.125 1 45.02 ? O3' CTP 301 A 1 HETATM 16 C C5' CTP . . . C 2 11.325 37.26 31.37 1 43.04 ? C5' CTP 301 A 1 HETATM 17 O O5' CTP . . . C 2 11.56 38.632 31.516 1 44.87 ? O5' CTP 301 A 1 HETATM 18 P PA CTP . . . C 2 13.089 39.212 31.154 1 43.29 ? PA CTP 301 A 1 HETATM 19 O O1A CTP . . . C 2 13.24 39.046 29.632 1 42.19 ? O1A CTP 301 A 1 HETATM 20 O O2A CTP . . . C 2 14.097 38.331 31.914 1 39.7 ? O2A CTP 301 A 1 HETATM 21 O O3A CTP . . . C 2 13.267 40.772 31.698 1 45.01 ? O3A CTP 301 A 1 HETATM 22 P PB CTP . . . C 2 13.574 41.979 30.633 1 47.02 ? PB CTP 301 A 1 HETATM 23 O O1B CTP . . . C 2 13.742 43.219 31.546 1 46.53 ? O1B CTP 301 A 1 HETATM 24 O O2B CTP . . . C 2 12.374 42.177 29.676 1 42.7 ? O2B CTP 301 A 1 HETATM 25 O O3B CTP . . . C 2 14.951 41.575 29.772 1 47.15 ? O3B CTP 301 A 1 HETATM 26 P PG CTP . . . C 2 16.465 42.182 30.026 1 47.02 ? PG CTP 301 A 1 HETATM 27 O O1G CTP . . . C 2 16.373 43.735 29.788 1 48.24 ? O1G CTP 301 A 1 HETATM 28 O O2G CTP . . . C 2 17.322 41.438 28.968 1 46.66 ? O2G CTP 301 A 1 HETATM 29 O O3G CTP . . . C 2 16.846 41.862 31.486 1 45.16 ? O3G CTP 301 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #