data_1UDX
#
_model_server_result.job_id            PRf9bDlqVvdrFt5x1_0_0A 
_model_server_result.datetime_utc      '2025-02-05 04:41:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1udx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    1UDX 
#
_exptl.entry_id    1UDX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1UDX 
_cell.length_a            65.332 
_cell.length_b            65.332 
_cell.length_c            201.709 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1UDX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 230 n n 
C1 H11 MPD sing 231 n n 
C1 H12 MPD sing 232 n n 
C1 H13 MPD sing 233 n n 
C2 O2 MPD sing 234 n n 
C2 CM MPD sing 235 n n 
C2 C3 MPD sing 236 n n 
O2 HO2 MPD sing 237 n n 
CM HM1 MPD sing 238 n n 
CM HM2 MPD sing 239 n n 
CM HM3 MPD sing 240 n n 
C3 C4 MPD sing 241 n n 
C3 H31 MPD sing 242 n n 
C3 H32 MPD sing 243 n n 
C4 O4 MPD sing 244 n n 
C4 C5 MPD sing 245 n n 
C4 H4 MPD sing 246 n n 
O4 HO4 MPD sing 247 n n 
C5 H51 MPD sing 248 n n 
C5 H52 MPD sing 249 n n 
C5 H53 MPD sing 250 n n 
#
_atom_sites.entry_id                     1UDX 
_atom_sites.fract_transf_matrix[1][1]    0.015306 
_atom_sites.fract_transf_matrix[1][2]    0.008837 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017674 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004958 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ACT A 1 601 1 ACT ACT . 
C 2 ACT A 1 602 2 ACT ACT . 
D 3 MPD A 1 501 1 MPD MPD . 
E 4 HOH A 1 603 1 HOH HOH . 
E 4 HOH A 2 604 2 HOH HOH . 
E 4 HOH A 3 605 3 HOH HOH . 
E 4 HOH A 4 606 4 HOH HOH . 
E 4 HOH A 5 607 5 HOH HOH . 
E 4 HOH A 6 608 6 HOH HOH . 
E 4 HOH A 7 609 7 HOH HOH . 
E 4 HOH A 8 610 8 HOH HOH . 
E 4 HOH A 9 611 9 HOH HOH . 
E 4 HOH A 10 612 10 HOH HOH . 
E 4 HOH A 11 613 11 HOH HOH . 
E 4 HOH A 12 614 12 HOH HOH . 
E 4 HOH A 13 615 13 HOH HOH . 
E 4 HOH A 14 616 14 HOH HOH . 
E 4 HOH A 15 617 15 HOH HOH . 
E 4 HOH A 16 618 16 HOH HOH . 
E 4 HOH A 17 619 17 HOH HOH . 
E 4 HOH A 18 620 18 HOH HOH . 
E 4 HOH A 19 621 19 HOH HOH . 
E 4 HOH A 20 622 20 HOH HOH . 
E 4 HOH A 21 623 21 HOH HOH . 
E 4 HOH A 22 624 22 HOH HOH . 
E 4 HOH A 23 625 23 HOH HOH . 
E 4 HOH A 24 626 24 HOH HOH . 
E 4 HOH A 25 627 25 HOH HOH . 
E 4 HOH A 26 628 26 HOH HOH . 
E 4 HOH A 27 629 27 HOH HOH . 
E 4 HOH A 28 630 28 HOH HOH . 
E 4 HOH A 29 631 29 HOH HOH . 
E 4 HOH A 30 632 30 HOH HOH . 
E 4 HOH A 31 633 31 HOH HOH . 
E 4 HOH A 32 634 32 HOH HOH . 
E 4 HOH A 33 635 33 HOH HOH . 
E 4 HOH A 34 636 34 HOH HOH . 
E 4 HOH A 35 637 35 HOH HOH . 
E 4 HOH A 36 638 36 HOH HOH . 
E 4 HOH A 37 639 37 HOH HOH . 
E 4 HOH A 38 640 38 HOH HOH . 
E 4 HOH A 39 641 39 HOH HOH . 
E 4 HOH A 40 642 40 HOH HOH . 
E 4 HOH A 41 643 41 HOH HOH . 
E 4 HOH A 42 644 42 HOH HOH . 
E 4 HOH A 43 645 43 HOH HOH . 
E 4 HOH A 44 646 44 HOH HOH . 
E 4 HOH A 45 647 45 HOH HOH . 
E 4 HOH A 46 648 46 HOH HOH . 
E 4 HOH A 47 649 47 HOH HOH . 
E 4 HOH A 48 650 48 HOH HOH . 
E 4 HOH A 49 651 49 HOH HOH . 
E 4 HOH A 50 652 50 HOH HOH . 
E 4 HOH A 51 653 51 HOH HOH . 
E 4 HOH A 52 654 52 HOH HOH . 
E 4 HOH A 53 655 53 HOH HOH . 
E 4 HOH A 54 656 54 HOH HOH . 
E 4 HOH A 55 657 55 HOH HOH . 
E 4 HOH A 56 658 56 HOH HOH . 
E 4 HOH A 57 659 57 HOH HOH . 
E 4 HOH A 58 660 58 HOH HOH . 
E 4 HOH A 59 661 59 HOH HOH . 
E 4 HOH A 60 662 60 HOH HOH . 
E 4 HOH A 61 663 61 HOH HOH . 
E 4 HOH A 62 664 62 HOH HOH . 
E 4 HOH A 63 665 63 HOH HOH . 
E 4 HOH A 64 666 64 HOH HOH . 
E 4 HOH A 65 667 65 HOH HOH . 
E 4 HOH A 66 668 66 HOH HOH . 
E 4 HOH A 67 669 67 HOH HOH . 
E 4 HOH A 68 670 68 HOH HOH . 
E 4 HOH A 69 671 69 HOH HOH . 
E 4 HOH A 70 672 70 HOH HOH . 
E 4 HOH A 71 673 71 HOH HOH . 
E 4 HOH A 72 674 72 HOH HOH . 
E 4 HOH A 73 675 73 HOH HOH . 
E 4 HOH A 74 676 74 HOH HOH . 
E 4 HOH A 75 677 75 HOH HOH . 
E 4 HOH A 76 678 76 HOH HOH . 
E 4 HOH A 77 679 77 HOH HOH . 
E 4 HOH A 78 680 78 HOH HOH . 
E 4 HOH A 79 681 79 HOH HOH . 
E 4 HOH A 80 682 80 HOH HOH . 
E 4 HOH A 81 683 81 HOH HOH . 
E 4 HOH A 82 684 82 HOH HOH . 
E 4 HOH A 83 685 83 HOH HOH . 
E 4 HOH A 84 686 84 HOH HOH . 
E 4 HOH A 85 687 85 HOH HOH . 
E 4 HOH A 86 688 86 HOH HOH . 
E 4 HOH A 87 689 87 HOH HOH . 
E 4 HOH A 88 690 88 HOH HOH . 
E 4 HOH A 89 691 89 HOH HOH . 
E 4 HOH A 90 692 90 HOH HOH . 
E 4 HOH A 91 693 91 HOH HOH . 
E 4 HOH A 92 694 92 HOH HOH . 
E 4 HOH A 93 695 93 HOH HOH . 
E 4 HOH A 94 696 94 HOH HOH . 
E 4 HOH A 95 697 95 HOH HOH . 
E 4 HOH A 96 698 96 HOH HOH . 
E 4 HOH A 97 699 97 HOH HOH . 
E 4 HOH A 98 700 98 HOH HOH . 
E 4 HOH A 99 701 99 HOH HOH . 
E 4 HOH A 100 702 100 HOH HOH . 
E 4 HOH A 101 703 101 HOH HOH . 
E 4 HOH A 102 704 102 HOH HOH . 
E 4 HOH A 103 705 103 HOH HOH . 
E 4 HOH A 104 706 104 HOH HOH . 
E 4 HOH A 105 707 105 HOH HOH . 
E 4 HOH A 106 708 106 HOH HOH . 
E 4 HOH A 107 709 107 HOH HOH . 
E 4 HOH A 108 710 108 HOH HOH . 
E 4 HOH A 109 711 109 HOH HOH . 
E 4 HOH A 110 712 110 HOH HOH . 
E 4 HOH A 111 713 111 HOH HOH . 
E 4 HOH A 112 714 112 HOH HOH . 
E 4 HOH A 113 715 113 HOH HOH . 
E 4 HOH A 114 716 114 HOH HOH . 
E 4 HOH A 115 717 115 HOH HOH . 
E 4 HOH A 116 718 116 HOH HOH . 
E 4 HOH A 117 719 117 HOH HOH . 
E 4 HOH A 118 720 118 HOH HOH . 
E 4 HOH A 119 721 119 HOH HOH . 
E 4 HOH A 120 722 120 HOH HOH . 
E 4 HOH A 121 723 121 HOH HOH . 
E 4 HOH A 122 724 122 HOH HOH . 
E 4 HOH A 123 725 123 HOH HOH . 
E 4 HOH A 124 726 124 HOH HOH . 
E 4 HOH A 125 727 125 HOH HOH . 
E 4 HOH A 126 728 126 HOH HOH . 
E 4 HOH A 127 729 127 HOH HOH . 
E 4 HOH A 128 730 128 HOH HOH . 
E 4 HOH A 129 731 129 HOH HOH . 
E 4 HOH A 130 732 130 HOH HOH . 
E 4 HOH A 131 733 131 HOH HOH . 
E 4 HOH A 132 734 132 HOH HOH . 
E 4 HOH A 133 735 133 HOH HOH . 
E 4 HOH A 134 736 134 HOH HOH . 
E 4 HOH A 135 737 135 HOH HOH . 
E 4 HOH A 136 738 136 HOH HOH . 
E 4 HOH A 137 739 137 HOH HOH . 
E 4 HOH A 138 740 138 HOH HOH . 
E 4 HOH A 139 741 139 HOH HOH . 
E 4 HOH A 140 742 140 HOH HOH . 
E 4 HOH A 141 743 141 HOH HOH . 
E 4 HOH A 142 744 142 HOH HOH . 
E 4 HOH A 143 745 143 HOH HOH . 
E 4 HOH A 144 746 144 HOH HOH . 
E 4 HOH A 145 747 145 HOH HOH . 
E 4 HOH A 146 748 146 HOH HOH . 
E 4 HOH A 147 749 147 HOH HOH . 
E 4 HOH A 148 750 148 HOH HOH . 
E 4 HOH A 149 751 149 HOH HOH . 
E 4 HOH A 150 752 150 HOH HOH . 
E 4 HOH A 151 753 151 HOH HOH . 
E 4 HOH A 152 754 152 HOH HOH . 
E 4 HOH A 153 755 153 HOH HOH . 
E 4 HOH A 154 756 154 HOH HOH . 
E 4 HOH A 155 757 155 HOH HOH . 
E 4 HOH A 156 758 156 HOH HOH . 
E 4 HOH A 157 759 157 HOH HOH . 
E 4 HOH A 158 760 158 HOH HOH . 
E 4 HOH A 159 761 159 HOH HOH . 
E 4 HOH A 160 762 160 HOH HOH . 
E 4 HOH A 161 763 161 HOH HOH . 
E 4 HOH A 162 764 162 HOH HOH . 
E 4 HOH A 163 765 163 HOH HOH . 
E 4 HOH A 164 766 164 HOH HOH . 
E 4 HOH A 165 767 165 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . D 3 7.679 27.865 -4.374 1 53.88 ? C1 MPD 501 A 1 
HETATM 2 C C2 MPD . . . D 3 8.745 28.84 -3.928 1 56.91 ? C2 MPD 501 A 1 
HETATM 3 O O2 MPD . . . D 3 9.12 29.581 -5.107 1 52.86 ? O2 MPD 501 A 1 
HETATM 4 C CM MPD . . . D 3 8.224 29.763 -2.885 1 50.91 ? CM MPD 501 A 1 
HETATM 5 C C3 MPD . . . D 3 10 28.123 -3.372 1 52.47 ? C3 MPD 501 A 1 
HETATM 6 C C4 MPD . . . D 3 11.367 28.671 -3.756 1 56.34 ? C4 MPD 501 A 1 
HETATM 7 O O4 MPD . . . D 3 11.52 30.001 -3.32 1 58.97 ? O4 MPD 501 A 1 
HETATM 8 C C5 MPD . . . D 3 12.472 27.843 -3.127 1 55.69 ? C5 MPD 501 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#