data_1UF9 # _model_server_result.job_id '_EPlhwL5Xjt27zqjwuOV9Q' _model_server_result.datetime_utc '2025-03-05 03:35:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1uf9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":500}' # _entry.id 1UF9 # _exptl.entry_id 1UF9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1UF9 _cell.length_a 102.12 _cell.length_b 102.12 _cell.length_c 65.67 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UF9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,F 1 1 B,D,G 2 1 C,E,H 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 97 A LEU 97 1_555 A N MSE 98 A MSE 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C MSE 98 A MSE 98 1_555 A N GLU 99 A GLU 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C VAL 142 A VAL 142 1_555 A N MSE 143 A MSE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C MSE 143 A MSE 143 1_555 A N ALA 144 A ALA 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C GLN 160 A GLN 160 1_555 A N MSE 161 A MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C MSE 161 A MSE 161 1_555 A N PRO 162 A PRO 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale7 B C LEU 97 B LEU 97 1_555 B N MSE 98 B MSE 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 B C MSE 98 B MSE 98 1_555 B N GLU 99 B GLU 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 B C VAL 142 B VAL 142 1_555 B N MSE 143 B MSE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 B C MSE 143 B MSE 143 1_555 B N ALA 144 B ALA 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 B C GLN 160 B GLN 160 1_555 B N MSE 161 B MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale12 B C MSE 161 B MSE 161 1_555 B N PRO 162 B PRO 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale13 C C LEU 97 C LEU 97 1_555 C N MSE 98 C MSE 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 C C MSE 98 C MSE 98 1_555 C N GLU 99 C GLU 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 C C VAL 142 C VAL 142 1_555 C N MSE 143 C MSE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 C C MSE 143 C MSE 143 1_555 C N ALA 144 C ALA 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale17 C C GLN 160 C GLN 160 1_555 C N MSE 161 C MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale18 C C MSE 161 C MSE 161 1_555 C N PRO 162 C PRO 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1UF9 _atom_sites.fract_transf_matrix[1][1] 0.009792 _atom_sites.fract_transf_matrix[1][2] 0.005654 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011307 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015228 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PO4 B 1 600 600 PO4 PO4 . E 3 ATP C 1 500 500 ATP ATP . F 4 HOH A 1 204 5 HOH TIP . F 4 HOH A 2 205 10 HOH TIP . F 4 HOH A 3 206 18 HOH TIP . F 4 HOH A 4 207 21 HOH TIP . F 4 HOH A 5 208 23 HOH TIP . F 4 HOH A 6 209 26 HOH TIP . F 4 HOH A 7 210 30 HOH TIP . G 4 HOH B 1 601 1 HOH TIP . G 4 HOH B 2 602 2 HOH TIP . G 4 HOH B 3 603 4 HOH TIP . G 4 HOH B 4 604 7 HOH TIP . G 4 HOH B 5 605 9 HOH TIP . G 4 HOH B 6 606 13 HOH TIP . G 4 HOH B 7 607 15 HOH TIP . G 4 HOH B 8 608 17 HOH TIP . G 4 HOH B 9 609 19 HOH TIP . G 4 HOH B 10 610 20 HOH TIP . G 4 HOH B 11 611 24 HOH TIP . G 4 HOH B 12 612 25 HOH TIP . G 4 HOH B 13 613 27 HOH TIP . G 4 HOH B 14 614 31 HOH TIP . G 4 HOH B 15 615 34 HOH TIP . G 4 HOH B 16 616 35 HOH TIP . H 4 HOH C 1 501 3 HOH TIP . H 4 HOH C 2 502 6 HOH TIP . H 4 HOH C 3 503 8 HOH TIP . H 4 HOH C 4 504 11 HOH TIP . H 4 HOH C 5 505 12 HOH TIP . H 4 HOH C 6 506 14 HOH TIP . H 4 HOH C 7 507 16 HOH TIP . H 4 HOH C 8 508 22 HOH TIP . H 4 HOH C 9 509 28 HOH TIP . H 4 HOH C 10 510 29 HOH TIP . H 4 HOH C 11 511 32 HOH TIP . H 4 HOH C 12 512 33 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 3 -34.627 96.355 31.944 0.69 49.21 ? PG ATP 500 C 1 HETATM 2 O O1G ATP . . . E 3 -33.973 95.428 32.917 0.69 42.22 ? O1G ATP 500 C 1 HETATM 3 O O2G ATP . . . E 3 -34.026 97.695 31.527 0.69 37.17 ? O2G ATP 500 C 1 HETATM 4 O O3G ATP . . . E 3 -36.116 96.634 32.223 0.69 34.61 ? O3G ATP 500 C 1 HETATM 5 P PB ATP . . . E 3 -35.069 93.933 30.571 0.69 54.28 ? PB ATP 500 C 1 HETATM 6 O O1B ATP . . . E 3 -34.454 93.309 31.766 0.69 61.89 ? O1B ATP 500 C 1 HETATM 7 O O2B ATP . . . E 3 -36.536 93.851 30.414 0.69 41.71 ? O2B ATP 500 C 1 HETATM 8 O O3B ATP . . . E 3 -34.645 95.496 30.566 0.69 54.15 ? O3B ATP 500 C 1 HETATM 9 P PA ATP . . . E 3 -35.158 93.204 27.844 0.69 48.08 ? PA ATP 500 C 1 HETATM 10 O O1A ATP . . . E 3 -35.684 91.843 27.567 0.69 39.77 ? O1A ATP 500 C 1 HETATM 11 O O2A ATP . . . E 3 -35.654 94.441 27.216 0.69 49.49 ? O2A ATP 500 C 1 HETATM 12 O O3A ATP . . . E 3 -34.347 93.34 29.248 0.69 46.31 ? O3A ATP 500 C 1 HETATM 13 O O5' ATP . . . E 3 -33.79 93.068 26.992 0.69 47.33 ? O5' ATP 500 C 1 HETATM 14 C C5' ATP . . . E 3 -32.903 94.187 26.861 0.69 51.27 ? C5' ATP 500 C 1 HETATM 15 C C4' ATP . . . E 3 -31.85 93.948 25.767 0.69 46.27 ? C4' ATP 500 C 1 HETATM 16 O O4' ATP . . . E 3 -31.133 92.7 26.064 0.69 48.43 ? O4' ATP 500 C 1 HETATM 17 C C3' ATP . . . E 3 -32.529 93.729 24.41 0.69 43.61 ? C3' ATP 500 C 1 HETATM 18 O O3' ATP . . . E 3 -31.766 94.371 23.389 0.69 32.74 ? O3' ATP 500 C 1 HETATM 19 C C2' ATP . . . E 3 -32.495 92.235 24.216 0.69 45.7 ? C2' ATP 500 C 1 HETATM 20 O O2' ATP . . . E 3 -32.418 91.931 22.822 0.69 56.03 ? O2' ATP 500 C 1 HETATM 21 C C1' ATP . . . E 3 -31.197 91.839 24.897 0.69 47.57 ? C1' ATP 500 C 1 HETATM 22 N N9 ATP . . . E 3 -31.144 90.391 25.264 0.69 47.94 ? N9 ATP 500 C 1 HETATM 23 C C8 ATP . . . E 3 -32.076 89.706 25.95 0.69 49 ? C8 ATP 500 C 1 HETATM 24 N N7 ATP . . . E 3 -31.681 88.435 26.08 0.69 41.99 ? N7 ATP 500 C 1 HETATM 25 C C5 ATP . . . E 3 -30.505 88.313 25.481 0.69 47.87 ? C5 ATP 500 C 1 HETATM 26 C C6 ATP . . . E 3 -29.626 87.247 25.292 0.69 43.36 ? C6 ATP 500 C 1 HETATM 27 N N6 ATP . . . E 3 -29.934 86.036 25.749 0.69 25.87 ? N6 ATP 500 C 1 HETATM 28 N N1 ATP . . . E 3 -28.466 87.453 24.622 0.69 41.06 ? N1 ATP 500 C 1 HETATM 29 C C2 ATP . . . E 3 -28.156 88.664 24.137 0.69 48.04 ? C2 ATP 500 C 1 HETATM 30 N N3 ATP . . . E 3 -28.988 89.702 24.302 0.69 38.53 ? N3 ATP 500 C 1 HETATM 31 C C4 ATP . . . E 3 -30.16 89.551 24.965 0.69 48.01 ? C4 ATP 500 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #