data_1UH0 # _model_server_result.job_id gogYNxHx-NQSs3zC1xjfCw _model_server_result.datetime_utc '2024-11-23 19:42:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1uh0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1200}' # _entry.id 1UH0 # _exptl.entry_id 1UH0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 235.234 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl 2-acetamido-2-deoxy-alpha-D-galactopyranoside' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1UH0 _cell.length_a 129.811 _cell.length_b 129.811 _cell.length_c 158.527 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UH0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS octameric 8 author_and_software_defined_assembly 1 PISA,PQS octameric 8 author_and_software_defined_assembly 2 PISA dodecameric 12 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,M,N,O,P 1 1,2 E,F,G,H,K,L,Q,R,S,T 2 1,3 A,B,C,D,I,J,M,N,O,P 3 1 E,F,G,H,K,L,Q,R,S,T 3 4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 79.2635 3 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+7/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 64.9055 112.419624 184.948167 4 'crystal symmetry operation' 3_664 -x+y+1,-x+1,z-2/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 64.9055 112.419624 -105.684667 5 'crystal symmetry operation' 12_555 x,x-y,-z+5/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 132.105833 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # _chem_comp.formula 'C9 H17 N O6' _chem_comp.formula_weight 235.234 _chem_comp.id MGC _chem_comp.mon_nstd_flag n _chem_comp.name 'methyl 2-acetamido-2-deoxy-alpha-D-galactopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'ALPHA-METHYL-N-ACETYL-D-GALACTOSAMINE;methyl 2-acetamido-2-deoxy-alpha-D-galactoside;methyl 2-acetamido-2-deoxy-D-galactoside;methyl 2-acetamido-2-deoxy-galactoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C6 MGC sing 224 n n O6 HO6 MGC sing 225 n n C6 C5 MGC sing 226 n n C6 H61 MGC sing 227 n n C6 H62 MGC sing 228 n n C5 O5 MGC sing 229 n n C5 C4 MGC sing 230 n n C5 H5 MGC sing 231 n n O5 C1 MGC sing 232 n n C1 O1 MGC sing 233 n n C1 C2 MGC sing 234 n n C1 H1 MGC sing 235 n n O1 CM MGC sing 236 n n CM HM1 MGC sing 237 n n CM HM2 MGC sing 238 n n CM HM3 MGC sing 239 n n C2 N2 MGC sing 240 n n C2 C3 MGC sing 241 n n C2 H2 MGC sing 242 n n N2 C7 MGC sing 243 n n N2 HN2 MGC sing 244 n n C7 O7 MGC doub 245 n n C7 C8 MGC sing 246 n n C8 H81 MGC sing 247 n n C8 H82 MGC sing 248 n n C8 H83 MGC sing 249 n n C3 O3 MGC sing 250 n n C3 C4 MGC sing 251 n n C3 H3 MGC sing 252 n n O3 HO3 MGC sing 253 n n C4 O4 MGC sing 254 n n C4 H4 MGC sing 255 n n O4 HO4 MGC sing 256 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MGC DGalpNAc[1Me]a 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MGC 1-methyl-N-acetyl-a-D-galactopyranose 'COMMON NAME' GMML 1 MGC a-methyl-N-acetyl-D-galactosamine 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 # _atom_sites.entry_id 1UH0 _atom_sites.fract_transf_matrix[1][1] 0.007704 _atom_sites.fract_transf_matrix[1][2] 0.004448 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008895 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006308 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 MGC A 1 1200 200 MGC MGC . J 3 MGC C 1 2200 200 MGC MGC . K 3 MGC E 1 3200 200 MGC MGC . L 3 MGC G 1 4200 200 MGC MGC . M 4 HOH A 1 213 213 HOH HOH . M 4 HOH A 2 229 229 HOH HOH . M 4 HOH A 3 230 230 HOH HOH . M 4 HOH A 4 231 231 HOH HOH . M 4 HOH A 5 233 233 HOH HOH . M 4 HOH A 6 234 234 HOH HOH . M 4 HOH A 7 235 235 HOH HOH . M 4 HOH A 8 236 236 HOH HOH . M 4 HOH A 9 237 237 HOH HOH . M 4 HOH A 10 238 238 HOH HOH . M 4 HOH A 11 254 254 HOH HOH . M 4 HOH A 12 255 255 HOH HOH . M 4 HOH A 13 256 256 HOH HOH . M 4 HOH A 14 257 257 HOH HOH . M 4 HOH A 15 260 260 HOH HOH . M 4 HOH A 16 261 261 HOH HOH . M 4 HOH A 17 267 267 HOH HOH . M 4 HOH A 18 268 268 HOH HOH . M 4 HOH A 19 301 301 HOH HOH . M 4 HOH A 20 302 302 HOH HOH . M 4 HOH A 21 308 308 HOH HOH . N 4 HOH B 1 232 232 HOH HOH . N 4 HOH B 2 239 239 HOH HOH . N 4 HOH B 3 266 266 HOH HOH . O 4 HOH C 1 206 206 HOH HOH . O 4 HOH C 2 207 207 HOH HOH . O 4 HOH C 3 223 223 HOH HOH . O 4 HOH C 4 224 224 HOH HOH . O 4 HOH C 5 226 226 HOH HOH . O 4 HOH C 6 227 227 HOH HOH . O 4 HOH C 7 228 228 HOH HOH . O 4 HOH C 8 248 248 HOH HOH . O 4 HOH C 9 249 249 HOH HOH . O 4 HOH C 10 250 250 HOH HOH . O 4 HOH C 11 251 251 HOH HOH . O 4 HOH C 12 252 252 HOH HOH . O 4 HOH C 13 262 262 HOH HOH . O 4 HOH C 14 263 263 HOH HOH . O 4 HOH C 15 270 270 HOH HOH . O 4 HOH C 16 276 276 HOH HOH . O 4 HOH C 17 278 278 HOH HOH . O 4 HOH C 18 286 286 HOH HOH . O 4 HOH C 19 291 291 HOH HOH . O 4 HOH C 20 292 292 HOH HOH . O 4 HOH C 21 293 293 HOH HOH . O 4 HOH C 22 296 296 HOH HOH . O 4 HOH C 23 299 299 HOH HOH . O 4 HOH C 24 303 303 HOH HOH . O 4 HOH C 25 306 306 HOH HOH . P 4 HOH D 1 253 253 HOH HOH . P 4 HOH D 2 265 265 HOH HOH . Q 4 HOH E 1 201 201 HOH HOH . Q 4 HOH E 2 202 202 HOH HOH . Q 4 HOH E 3 203 203 HOH HOH . Q 4 HOH E 4 204 204 HOH HOH . Q 4 HOH E 5 205 205 HOH HOH . Q 4 HOH E 6 209 209 HOH HOH . Q 4 HOH E 7 210 210 HOH HOH . Q 4 HOH E 8 211 211 HOH HOH . Q 4 HOH E 9 225 225 HOH HOH . Q 4 HOH E 10 240 240 HOH HOH . Q 4 HOH E 11 241 241 HOH HOH . Q 4 HOH E 12 242 242 HOH HOH . Q 4 HOH E 13 243 243 HOH HOH . Q 4 HOH E 14 258 258 HOH HOH . Q 4 HOH E 15 264 264 HOH HOH . Q 4 HOH E 16 271 271 HOH HOH . Q 4 HOH E 17 272 272 HOH HOH . Q 4 HOH E 18 274 274 HOH HOH . Q 4 HOH E 19 275 275 HOH HOH . Q 4 HOH E 20 277 277 HOH HOH . Q 4 HOH E 21 279 279 HOH HOH . Q 4 HOH E 22 280 280 HOH HOH . Q 4 HOH E 23 294 294 HOH HOH . Q 4 HOH E 24 295 295 HOH HOH . Q 4 HOH E 25 297 297 HOH HOH . Q 4 HOH E 26 298 298 HOH HOH . Q 4 HOH E 27 304 304 HOH HOH . R 4 HOH F 1 208 208 HOH HOH . R 4 HOH F 2 244 244 HOH HOH . R 4 HOH F 3 245 245 HOH HOH . R 4 HOH F 4 259 259 HOH HOH . R 4 HOH F 5 273 273 HOH HOH . S 4 HOH G 1 214 214 HOH HOH . S 4 HOH G 2 215 215 HOH HOH . S 4 HOH G 3 216 216 HOH HOH . S 4 HOH G 4 217 217 HOH HOH . S 4 HOH G 5 218 218 HOH HOH . S 4 HOH G 6 219 219 HOH HOH . S 4 HOH G 7 220 220 HOH HOH . S 4 HOH G 8 221 221 HOH HOH . S 4 HOH G 9 222 222 HOH HOH . S 4 HOH G 10 246 246 HOH HOH . S 4 HOH G 11 247 247 HOH HOH . S 4 HOH G 12 269 269 HOH HOH . S 4 HOH G 13 281 281 HOH HOH . S 4 HOH G 14 282 282 HOH HOH . S 4 HOH G 15 283 283 HOH HOH . S 4 HOH G 16 284 284 HOH HOH . S 4 HOH G 17 285 285 HOH HOH . S 4 HOH G 18 288 288 HOH HOH . S 4 HOH G 19 289 289 HOH HOH . S 4 HOH G 20 300 300 HOH HOH . S 4 HOH G 21 307 307 HOH HOH . S 4 HOH G 22 309 309 HOH HOH . T 4 HOH H 1 212 212 HOH HOH . T 4 HOH H 2 287 287 HOH HOH . T 4 HOH H 3 290 290 HOH HOH . T 4 HOH H 4 305 305 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 MGC . . . I 3 16.305 51.035 16.31 1 28.05 ? O6 MGC 1200 A 1 HETATM 2 C C6 MGC . . . I 3 16.249 51.122 14.902 1 28.05 ? C6 MGC 1200 A 1 HETATM 3 C C5 MGC . . . I 3 15.332 50.7 13.753 1 28.05 ? C5 MGC 1200 A 1 HETATM 4 O O5 MGC . . . I 3 15.169 49.258 13.744 1 28.05 ? O5 MGC 1200 A 1 HETATM 5 C C1 MGC . . . I 3 14.351 48.689 12.703 1 28.05 ? C1 MGC 1200 A 1 HETATM 6 O O1 MGC . . . I 3 15.117 48.588 11.51 1 28.05 ? O1 MGC 1200 A 1 HETATM 7 C CM MGC . . . I 3 16.16 47.808 10.92 1 28.05 ? CM MGC 1200 A 1 HETATM 8 C C2 MGC . . . I 3 12.954 49.37 12.761 1 28.05 ? C2 MGC 1200 A 1 HETATM 9 N N2 MGC . . . I 3 12.137 48.999 11.589 1 28.05 ? N2 MGC 1200 A 1 HETATM 10 C C7 MGC . . . I 3 11.01 48.294 11.905 1 28.05 ? C7 MGC 1200 A 1 HETATM 11 O O7 MGC . . . I 3 10.681 47.983 13.053 1 28.05 ? O7 MGC 1200 A 1 HETATM 12 C C8 MGC . . . I 3 10.11 47.877 10.742 1 28.05 ? C8 MGC 1200 A 1 HETATM 13 C C3 MGC . . . I 3 13.074 50.9 12.733 1 28.05 ? C3 MGC 1200 A 1 HETATM 14 O O3 MGC . . . I 3 11.783 51.493 12.794 1 28.05 ? O3 MGC 1200 A 1 HETATM 15 C C4 MGC . . . I 3 13.941 51.365 13.903 1 28.05 ? C4 MGC 1200 A 1 HETATM 16 O O4 MGC . . . I 3 13.323 51.041 15.14 1 28.05 ? O4 MGC 1200 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #