data_1UH1 # _model_server_result.job_id 9VUV8TrDBCjjEGYkMNyVDQ _model_server_result.datetime_utc '2024-12-01 01:19:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1uh1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1200}' # _entry.id 1UH1 # _exptl.entry_id 1UH1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 235.234 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'methyl 2-acetamido-2-deoxy-alpha-D-galactopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1UH1 _cell.length_a 129.446 _cell.length_b 129.446 _cell.length_c 158.346 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UH1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS octameric 8 author_and_software_defined_assembly 1 PISA,PQS octameric 8 author_and_software_defined_assembly 2 PISA dodecameric 12 software_defined_assembly 3 PISA dodecameric 12 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,L,M,N,O,P 1 1,2 E,F,G,H,J,K,Q,R,S,T 2 1,3 E,F,G,H,J,K,Q,R,S,T 3 1 A,B,C,D,I,L,M,N,O,P 3 4,5 E,F,G,H,J,K,Q,R,S,T 4 1 A,B,C,D,I,L,M,N,O,P 4 6,7 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 79.173 3 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+7/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 64.723 112.103524 184.737 4 'crystal symmetry operation' 2_655 -y+1,x-y,z+2/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 129.446 0 105.564 5 'crystal symmetry operation' 12_555 x,x-y,-z+5/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 131.955 6 'crystal symmetry operation' 6_655 x-y+1,x,z+5/6 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 129.446 0 131.955 7 'crystal symmetry operation' 8_666 x-y+1,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 64.723 112.103524 158.346 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NGA _pdbx_entity_branch_link.comp_id_2 AMG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n I AMG 1 I 1 AMG C 200 GGA 3 n I NGA 2 I 2 NGA C 200 GGA 3 n J AMG 1 J 1 AMG E 200 GGA 3 n J NGA 2 J 2 NGA E 200 GGA 3 n K AMG 1 K 1 AMG G 200 GGA 3 n K NGA 2 K 2 NGA G 200 GGA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 I O3 AMG . I AMG 1 1_555 I C1 NGA . I NGA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.201 ? covale ? covale2 J O3 AMG . J AMG 1 1_555 J C1 NGA . J NGA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.198 ? covale ? covale3 K O3 AMG . K AMG 1 1_555 K C1 NGA . K NGA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.187 ? # _chem_comp.formula 'C9 H17 N O6' _chem_comp.formula_weight 235.234 _chem_comp.id MGC _chem_comp.mon_nstd_flag n _chem_comp.name 'methyl 2-acetamido-2-deoxy-alpha-D-galactopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'ALPHA-METHYL-N-ACETYL-D-GALACTOSAMINE;methyl 2-acetamido-2-deoxy-alpha-D-galactoside;methyl 2-acetamido-2-deoxy-D-galactoside;methyl 2-acetamido-2-deoxy-galactoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C6 MGC sing 251 n n O6 HO6 MGC sing 252 n n C6 C5 MGC sing 253 n n C6 H61 MGC sing 254 n n C6 H62 MGC sing 255 n n C5 O5 MGC sing 256 n n C5 C4 MGC sing 257 n n C5 H5 MGC sing 258 n n O5 C1 MGC sing 259 n n C1 O1 MGC sing 260 n n C1 C2 MGC sing 261 n n C1 H1 MGC sing 262 n n O1 CM MGC sing 263 n n CM HM1 MGC sing 264 n n CM HM2 MGC sing 265 n n CM HM3 MGC sing 266 n n C2 N2 MGC sing 267 n n C2 C3 MGC sing 268 n n C2 H2 MGC sing 269 n n N2 C7 MGC sing 270 n n N2 HN2 MGC sing 271 n n C7 O7 MGC doub 272 n n C7 C8 MGC sing 273 n n C8 H81 MGC sing 274 n n C8 H82 MGC sing 275 n n C8 H83 MGC sing 276 n n C3 O3 MGC sing 277 n n C3 C4 MGC sing 278 n n C3 H3 MGC sing 279 n n O3 HO3 MGC sing 280 n n C4 O4 MGC sing 281 n n C4 H4 MGC sing 282 n n O4 HO4 MGC sing 283 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MGC DGalpNAc[1Me]a 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MGC 1-methyl-N-acetyl-a-D-galactopyranose 'COMMON NAME' GMML 1 MGC a-methyl-N-acetyl-D-galactosamine 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 # _atom_sites.entry_id 1UH1 _atom_sites.fract_transf_matrix[1][1] 0.007725 _atom_sites.fract_transf_matrix[1][2] 0.00446 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00892 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 4 MGC A 1 1200 200 MGC MGC . M 5 HOH A 1 209 209 HOH HOH . M 5 HOH A 2 218 218 HOH HOH . M 5 HOH A 3 219 219 HOH HOH . M 5 HOH A 4 220 220 HOH HOH . M 5 HOH A 5 221 221 HOH HOH . M 5 HOH A 6 222 222 HOH HOH . M 5 HOH A 7 223 223 HOH HOH . M 5 HOH A 8 224 224 HOH HOH . M 5 HOH A 9 225 225 HOH HOH . M 5 HOH A 10 232 232 HOH HOH . M 5 HOH A 11 233 233 HOH HOH . M 5 HOH A 12 234 234 HOH HOH . M 5 HOH A 13 239 239 HOH HOH . M 5 HOH A 14 245 245 HOH HOH . M 5 HOH A 15 255 255 HOH HOH . M 5 HOH A 16 267 267 HOH HOH . M 5 HOH A 17 276 276 HOH HOH . M 5 HOH A 18 279 279 HOH HOH . M 5 HOH A 19 290 290 HOH HOH . M 5 HOH A 20 294 294 HOH HOH . M 5 HOH A 21 295 295 HOH HOH . M 5 HOH A 22 296 296 HOH HOH . M 5 HOH A 23 297 297 HOH HOH . M 5 HOH A 24 298 298 HOH HOH . M 5 HOH A 25 308 308 HOH HOH . M 5 HOH A 26 309 309 HOH HOH . N 5 HOH B 1 302 302 HOH HOH . O 5 HOH C 1 216 216 HOH HOH . O 5 HOH C 2 217 217 HOH HOH . O 5 HOH C 3 228 228 HOH HOH . O 5 HOH C 4 229 229 HOH HOH . O 5 HOH C 5 230 230 HOH HOH . O 5 HOH C 6 231 231 HOH HOH . O 5 HOH C 7 236 236 HOH HOH . O 5 HOH C 8 237 237 HOH HOH . O 5 HOH C 9 241 241 HOH HOH . O 5 HOH C 10 248 248 HOH HOH . O 5 HOH C 11 253 253 HOH HOH . O 5 HOH C 12 254 254 HOH HOH . O 5 HOH C 13 257 257 HOH HOH . O 5 HOH C 14 259 259 HOH HOH . O 5 HOH C 15 261 261 HOH HOH . O 5 HOH C 16 271 271 HOH HOH . O 5 HOH C 17 272 272 HOH HOH . O 5 HOH C 18 277 277 HOH HOH . O 5 HOH C 19 278 278 HOH HOH . O 5 HOH C 20 281 281 HOH HOH . O 5 HOH C 21 282 282 HOH HOH . O 5 HOH C 22 283 283 HOH HOH . O 5 HOH C 23 285 285 HOH HOH . O 5 HOH C 24 286 286 HOH HOH . O 5 HOH C 25 287 287 HOH HOH . O 5 HOH C 26 292 292 HOH HOH . O 5 HOH C 27 299 299 HOH HOH . O 5 HOH C 28 300 300 HOH HOH . O 5 HOH C 29 303 303 HOH HOH . O 5 HOH C 30 304 304 HOH HOH . O 5 HOH C 31 305 305 HOH HOH . O 5 HOH C 32 306 306 HOH HOH . O 5 HOH C 33 307 307 HOH HOH . P 5 HOH D 1 269 269 HOH HOH . P 5 HOH D 2 288 288 HOH HOH . Q 5 HOH E 1 202 201 HOH HOH . Q 5 HOH E 2 203 202 HOH HOH . Q 5 HOH E 3 204 203 HOH HOH . Q 5 HOH E 4 205 204 HOH HOH . Q 5 HOH E 5 206 205 HOH HOH . Q 5 HOH E 6 207 206 HOH HOH . Q 5 HOH E 7 208 207 HOH HOH . Q 5 HOH E 8 209 226 HOH HOH . Q 5 HOH E 9 210 238 HOH HOH . Q 5 HOH E 10 211 243 HOH HOH . Q 5 HOH E 11 212 244 HOH HOH . Q 5 HOH E 12 213 256 HOH HOH . Q 5 HOH E 13 214 262 HOH HOH . Q 5 HOH E 14 215 265 HOH HOH . Q 5 HOH E 15 216 268 HOH HOH . Q 5 HOH E 16 217 274 HOH HOH . Q 5 HOH E 17 218 280 HOH HOH . Q 5 HOH E 18 219 291 HOH HOH . Q 5 HOH E 19 220 293 HOH HOH . Q 5 HOH E 20 221 301 HOH HOH . Q 5 HOH E 21 222 310 HOH HOH . Q 5 HOH E 22 223 311 HOH HOH . Q 5 HOH E 23 224 312 HOH HOH . Q 5 HOH E 24 225 314 HOH HOH . Q 5 HOH E 25 226 315 HOH HOH . Q 5 HOH E 26 227 316 HOH HOH . Q 5 HOH E 27 228 320 HOH HOH . R 5 HOH F 1 235 235 HOH HOH . R 5 HOH F 2 242 242 HOH HOH . R 5 HOH F 3 258 258 HOH HOH . R 5 HOH F 4 264 264 HOH HOH . R 5 HOH F 5 270 270 HOH HOH . S 5 HOH G 1 210 210 HOH HOH . S 5 HOH G 2 211 211 HOH HOH . S 5 HOH G 3 212 212 HOH HOH . S 5 HOH G 4 213 213 HOH HOH . S 5 HOH G 5 214 214 HOH HOH . S 5 HOH G 6 215 215 HOH HOH . S 5 HOH G 7 227 227 HOH HOH . S 5 HOH G 8 240 240 HOH HOH . S 5 HOH G 9 246 246 HOH HOH . S 5 HOH G 10 247 247 HOH HOH . S 5 HOH G 11 250 250 HOH HOH . S 5 HOH G 12 251 251 HOH HOH . S 5 HOH G 13 252 252 HOH HOH . S 5 HOH G 14 260 260 HOH HOH . S 5 HOH G 15 266 266 HOH HOH . S 5 HOH G 16 273 273 HOH HOH . S 5 HOH G 17 284 284 HOH HOH . S 5 HOH G 18 313 313 HOH HOH . S 5 HOH G 19 317 317 HOH HOH . S 5 HOH G 20 318 318 HOH HOH . S 5 HOH G 21 319 319 HOH HOH . T 5 HOH H 1 208 208 HOH HOH . T 5 HOH H 2 249 249 HOH HOH . T 5 HOH H 3 263 263 HOH HOH . T 5 HOH H 4 275 275 HOH HOH . T 5 HOH H 5 289 289 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 MGC . . . L 4 16.227 50.808 16.31 1 32.68 ? O6 MGC 1200 A 1 HETATM 2 C C6 MGC . . . L 4 16.087 51.009 14.912 1 28.56 ? C6 MGC 1200 A 1 HETATM 3 C C5 MGC . . . L 4 15.179 50.563 13.766 1 31.46 ? C5 MGC 1200 A 1 HETATM 4 O O5 MGC . . . L 4 15.033 49.117 13.764 1 32.91 ? O5 MGC 1200 A 1 HETATM 5 C C1 MGC . . . L 4 14.232 48.543 12.723 1 32.83 ? C1 MGC 1200 A 1 HETATM 6 O O1 MGC . . . L 4 15.001 48.495 11.536 1 33.74 ? O1 MGC 1200 A 1 HETATM 7 C CM MGC . . . L 4 16.068 47.766 10.936 1 35.84 ? CM MGC 1200 A 1 HETATM 8 C C2 MGC . . . L 4 12.814 49.181 12.795 1 32.73 ? C2 MGC 1200 A 1 HETATM 9 N N2 MGC . . . L 4 11.989 48.766 11.644 1 32.58 ? N2 MGC 1200 A 1 HETATM 10 C C7 MGC . . . L 4 10.783 48.208 11.982 1 32.48 ? C7 MGC 1200 A 1 HETATM 11 O O7 MGC . . . L 4 10.383 48.049 13.141 1 35.27 ? O7 MGC 1200 A 1 HETATM 12 C C8 MGC . . . L 4 9.89 47.766 10.828 1 30.55 ? C8 MGC 1200 A 1 HETATM 13 C C3 MGC . . . L 4 12.902 50.716 12.748 1 33.24 ? C3 MGC 1200 A 1 HETATM 14 O O3 MGC . . . L 4 11.608 51.292 12.818 1 33.37 ? O3 MGC 1200 A 1 HETATM 15 C C4 MGC . . . L 4 13.778 51.217 13.902 1 33.09 ? C4 MGC 1200 A 1 HETATM 16 O O4 MGC . . . L 4 13.176 50.935 15.154 1 37.63 ? O4 MGC 1200 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 16 #